BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63010.1
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358511 jgi|Araly1|358511|fgenesh1_pg.C_scaffold_8002298 1450 0.0
> Ahg358511 jgi|Araly1|358511|fgenesh1_pg.C_scaffold_8002298
Length=1029
Score = 1450 bits (785), Expect = 0.0
Identities = 950/1027 (93%), Gaps = 21/1027 (2%)
Strand=Plus/Plus
Query 26 ATGGACGCAGCAGATTGCTATCTCGAAGGAAACGCCGACGCCGTAGAATTCTGTCCTCAC 85
|||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1 ATGGACGCAGCACATTGCTATCTCGAAGGAAACGCCGACGCTGTAGAATTTTGTCCACAC 60
Query 86 GAGTCTTACGCAAACTTGCTCGCAGCTTCGACTTATACACTTCAAGAAGGAGATTGTCCC 145
||| ||||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||||
Sbjct 61 GAGCCTTACGCTAACTTGCTTGCAGCTTCTACTTACACACTCCAAGAAGGAGATTGTCCC 120
Query 146 TCTCGATCCGGGTCAGTGTATCTATTTGATGTCGGAGATGTTGAAGATGTTGGCTTGAAT 205
|||||||| ||||| |||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 121 TCTCGATCTGGGTCGGTGTATTTATTTGATGTCGGAGATGTGGAAGAGGTTGGCTTGAAT 180
Query 206 CTTATCCAGAAAATTGACACTGCTGGAGT-TTTCGATATCCGGTGGAGTCGTGGTGGCGA 264
|||||||||||| |||| || || ||||| ||| ||||||||||||||||||||||||||
Sbjct 181 CTTATCCAGAAAGTTGATACCGCCGGAGTGTTT-GATATCCGGTGGAGTCGTGGTGGCGA 239
Query 265 TGGA---GGAGACGTGGCGCTTGCTCAGGCTGATGCTGATGGATGCTTGATAGTTTACAA 321
|||| ||| ||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 TGGAGGTGGAAACGTGGCTCTTGCTCAGGCTGATGCTGATGGATGCTTGAGAGTTTACAA 299
Query 322 GATAGATGAGACTGAAAG-TAAA-G--GTACTCTGAGAGAAGTCTCCGG-GAAAAGAATC 376
|||||||||||||| ||| |||| | || ||||||| |||||||| || ||||| ||||
Sbjct 300 GATAGATGAGACTG-AAGTTAAAGGTTGTTCTCTGAGGGAAGTCTCTGGTGAAAA-AATC 357
Query 377 AGCTCATCAATGTGTCTTTGTTTGGATTGGGATCCATCATCAACATCAATCGTTGTTGGT 436
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 AGCTCATCAATGTGTCTTTGTTTGGATTGGGATCCATCATCAACATCAATCGTAGTTGGT 417
Query 437 TTATCAGATGGCTCTGCTTCAGTTGTTTCATTCACGGATTCTAAT-CTAGAAACAGTTCA 495
||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| ||
Sbjct 418 TTATCAGATGGCTCTGCTTCAGTTGTTTCATTCACTGATTCT-ATGCTAGAAACAGTCCA 476
Query 496 AGAATGGAAAGGGCATGACTTTGAGCTTTGGACGGCGTCATTCGATCTCAACAATCCTAA 555
|||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 477 AGAATGGAAAGGGCATGATTTTGAGGTTTGGACGGCCTCATTCGATCTCAACAATCCTAA 536
Query 556 TTTGGTCTATACTGGATCAGATGATTGCAAGTTCAGCTGTTGGGATATCAGAGATAGTCC 615
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTTGGTCTATACTGGATCAGACGATTGCAAGTTCAGCTGTTGGGATATCAGAGATAGTCC 596
Query 616 GGCTGACAATCGGGTTTTTCAGAATTCCAAAGTTCATACAATGGGTGTTTGCTGTATTTC 675
|||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 597 GGCTGACAATCGGGTTTTTCAGAAATCCAAAGTGCATTCAATGGGTGTTTGCTGTATTTC 656
Query 676 ATCAAACCCAAGTGATCCTTACTCTATATTCACCGGAAGTTATGATGAAAC-CTTAAGAG 734
|||| |||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 657 CCCAAATCCAAGTGATCCTTACTCTATATTCACCGGAAGTTATGATGAAACAC-TACGAG 715
Query 735 TTTGGGACACGAGGTCTGTTTCGAGACCTCTGAACGAAACATCAGTGTCTTTAGGTGGTG 794
| ||||||||||||||||||||||||||| ||||||||||||| |||||| |||| || |
Sbjct 716 TGTGGGACACGAGGTCTGTTTCGAGACCTGTGAACGAAACATCGGTGTCTCTAGGCGGAG 775
Query 795 GAGTGTGGAGAATCAAGCACCATCCTTCTCTGAGCGGTGTTGTATTGGCGGCTTGTATGC 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GAGTGTGGAGAATCAAGCACCATCCTTCTCTGAGCGGTGTTGTATTGGCGGCTTGTATGC 835
Query 855 ATAACGGTTTTGCTTTAGCGAAGGTTAGTGATGGGAAAGGTGAAGTGTTGGAGAGTTATA 914
|||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 836 ATAATGGTTTTGCTGTAGCGAAGGTTAGTGATGGGAAAGGTGAAGTAATGGAGAATTATA 895
Query 915 ACAAGCATC-ATTCTCTTGCTTATGGAGCAGATTGGTACAGAGGGAAAGATCAGAAGCAA 973
||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 896 ACAAGCA-CGAATCTCTTGCTTATGGAGCAGATTGGTACAGAGGGAAAGATCAGAAGCGA 954
Query 974 AGCGTTGTGGCAACTTGTTCGTTTTATGATCGGCTTCTTCGGGTATGGATGCC-GATAAC 1032
|| |||||||||||||||||||| ||||||||||||||||| |||||||||| || |||
Sbjct 955 AGTGTTGTGGCAACTTGTTCGTTCTATGATCGGCTTCTTCGATTATGGATGCCAGA-AAC 1013
Query 1033 TG-ATTT 1038
|| ||||
Sbjct 1014 TGCATTT 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47310539997
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5