BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63030.1
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319751 jgi|Araly1|319751|fgenesh1_pm.C_scaffold_3002767 540 6e-153
Ahg951098 jgi|Araly1|951098|scaffold_802985.1 510 4e-144
> Ahg319751 jgi|Araly1|319751|fgenesh1_pm.C_scaffold_3002767
Length=363
Score = 540 bits (292), Expect = 6e-153
Identities = 353/379 (93%), Gaps = 17/379 (4%)
Strand=Plus/Plus
Query 130 ATGGGTTCAATGTTCAGTGGAAACCGAATGAGCAAGGAAGAGATGGAGGTGGTGGTGAAC 189
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTCAATGTTCAGTGGAAACAGGATGAGCAAGGAAGAGATGGAGGTGGTGGTGAAC 60
Query 190 AAGGCTAAAGAGATCGTCTCTGCTTATCCCGTTGTTGTCTTCAGCAAGACATACTGTGGT 249
|||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 61 AAGGCTAAAGAGATCGTCTCTGCTTATCCC------G--TT-------ACATACTGTGGT 105
Query 250 TATTGCCAGAGGGTGAAGCAGTTACTGACGCAGCTAGGAGCAACTTTTAAAGTACTTGAG 309
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 106 TACTGCCAGAGGGTGAAGCAGTTACTGACACAGCTAGGAGCAACTTTTAAAGTACTTGAG 165
Query 310 CTCGATGAAATGAGTGATGGAGGTGAGATCCAATCAGCTTTATCAGAGTGGACTGGACAG 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 CTCGATGAAATGAGTGATGGAGGTGAGATCCAATCAGCTTTATCAGAGTGGACTGGACAG 225
Query 370 ACCACAGTTCCAAACGTCTTCATCAAAGGAAACCACATCGGTGGATGCGATAGAGTGATG 429
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 226 AGCACAGTTCCAAACGTCTTCATCAAAGGAAAACACATCGGTGGATGCGATAGAGTGATA 285
Query 430 GAGACCAACAAGCAAGGCAAGCTTGTGCCTCTACTTACTGAAGCTGGGGCTATTGC-AGA 488
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 286 GAGACCAACAAGCAAGGCAAACTTGTGCCTCTACTTACTGAAGCTGGGGCTATTGCCA-A 344
Query 489 TAACTCTTCTCAACTTTGA 507
|||| ||||||||||||||
Sbjct 345 TAACACTTCTCAACTTTGA 363
> Ahg951098 jgi|Araly1|951098|scaffold_802985.1
Length=418
Score = 510 bits (276), Expect = 4e-144
Identities = 354/392 (90%), Gaps = 3/392 (1%)
Strand=Plus/Plus
Query 120 AGAAGAAGAAATGGGTTCAATGTTCAGTGGAAACCGAATGAGCAAGGAAGAGATGGAGGT 179
|||| ||||||||||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct 12 AGAA-AAGAAATGGGTTCTATGTTCAGTGGAAACCGATTGAATAAGGAAGAGATGGAGGT 70
Query 180 GGTGGTGAACAAGGCTAAAGAGATCGTCTCTGCTTATCCC-GTTGTTGTCTTCAGCAAGA 238
|||| |||||||||| |||||||||||||| || || ||| || ||||||||||||||||
Sbjct 71 GGTGATGAACAAGGCCAAAGAGATCGTCTCCGCGTA-CCCAGTCGTTGTCTTCAGCAAGA 129
Query 239 CATACTGTGGTTATTGCCAGAGGGTGAAGCAGTTACTGACGCAGCTAGGAGCAACTTTTA 298
|||| |||||||| |||||||||||||||||||| |||| || || ||||||| |||||
Sbjct 130 CATATTGTGGTTACTGCCAGAGGGTGAAGCAGTTGTTGACACAACTGGGAGCAAGTTTTA 189
Query 299 AAGTACTTGAGCTCGATGAAATGAGTGATGGAGGTGAGATCCAATCAGCTTTATCAGAGT 358
||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 190 AAGTATTTGAGCTCGATGAGATGAGTGATGGAGGTGAGATCCAGGCAGCTCTATCAGAGT 249
Query 359 GGACTGGACAGACCACAGTTCCAAACGTCTTCATCAAAGGAAACCACATCGGTGGATGCG 418
||||||| |||| ||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 250 GGACTGGGCAGAGCACTGTTCCAAACGTCTTCATCAAAGGAAAACATATCGGTGGATGCG 309
Query 419 ATAGAGTGATGGAGACCAACAAGCAAGGCAAGCTTGTGCCTCTACTTACTGAAGCTGGGG 478
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 310 ATAAAGTGATGGAGAGTAACAAGCAAGGCAAGCTTGTGCCTCTACTTACTGAAGCTGGTG 369
Query 479 CTATTGCAGATAACTCTTCTCAACTTTGATGA 510
| || ||| ||||||||||||| |||||||||
Sbjct 370 CCATAGCAAATAACTCTTCTCAGCTTTGATGA 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25123002303
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5