BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63040.1
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343424 jgi|Araly1|343424|fgenesh1_pg.C_scaffold_3003187 1371 0.0
> Ahg343424 jgi|Araly1|343424|fgenesh1_pg.C_scaffold_3003187
Length=1224
Score = 1371 bits (742), Expect = 0.0
Identities = 879/945 (93%), Gaps = 10/945 (1%)
Strand=Plus/Plus
Query 449 TCTCTTCACATTTCC-TCAAGAGGCCAAAAACCAAGCGAAGTCTCCCGAAAGAGAACTTA 507
||||||||||||||| || |||| |||||| ||||| ||||||| || ||||||| |||
Sbjct 283 TCTCTTCACATTTCCTTC-AGAGACCAAAATCCAAGAGAAGTCTTCCAAAAGAGAGTTTA 341
Query 508 TTTGCCTCTTGCTACTTCAGAAGAAAAGTTCCACTACACTGAAGATACAAC-AAATGATC 566
||||||| |||| |||||||||||| ||||||| |||||||| | || || | |||
Sbjct 342 TTTGCCTTTTGCGACTTCAGAAGAACAGTTCCAGTACACTGACCAAAC-ACTCGACAATC 400
Query 567 CAGACACAGTAAGTCCCCAAATTGGCACCGAAGCTACACCTAGAGATGATGA-TTCAACT 625
|||| ||| ||||||||||||| || |||||||||||||| |||||| | | |||||||
Sbjct 401 CAGAAACAACAAGTCCCCAAATTCGCCCCGAAGCTACACCTCGAGATGGT-AGTTCAACT 459
Query 626 ATCCAATACAATAGAAATGACGGGAAACCGGGTTTCATTTCGTTTTACAATCCTCGGAAT 685
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 460 ATCCAATACAATGGAAATGACGGAAAACCGGGTTTCATTTCGTTTTACAATCCTCGGAAT 519
Query 686 AAAACTGAGGATATCATTATCCCCCCTGAAACTCAAAGTCCATGGGGACGCCTGCTCTGG 745
||||| |||||||||||| |||| |||||| | |||||| ||||||||||||||||||||
Sbjct 520 AAAACAGAGGATATCATTGTCCCTCCTGAATCACAAAGTACATGGGGACGCCTGCTCTGG 579
Query 746 CTCATTGGTCCTGCAGTCTTAGTCTCCTCTTTCATTTTACCTCCAGTTTACTTACGAAGA 805
|||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||||||
Sbjct 580 CTCATTGGTCCTGCTGTCTTAGTTTCCTCTTTCATTTTGCCTCCAATTTACTTACGAAGA 639
Query 806 ATAGTCTCAGCAGTTTTTGAAGATTCTTTGCTCACAGACTTCCTCATCCTGTTCTTCACC 865
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 640 ATAGTCTCAGCAGTTTTTGAAGACTCTTTGCTCACAGACTTCCTCATCCTGTTCTTCACC 699
Query 866 GAGGCTCTCTTCTACTGCGGAGTCGCTGCATTTCTTCTGATAATAGACCGCTCAA-GAAA 924
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 700 GAGGCTCTCTTCTACTGTGGAGTCGCCGCATTTCTTCTGATAATAGACCGCTCAAGGAAA 759
Query 925 AGGATCCGGAAAAGTTCCCCAGAACCGAATCAATCCTTCTCAGTTAGGACAAAGAATCTC 984
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 760 A-CATCCGGAAAAGTTCCCCAGAACCGTATCAATCCTTCTCAGTTAGGACAAAGAATCTC 818
Query 985 CTCTGTAGCAACATTAGTGCTGAGTCTCATGATTCCAATGGTGACAATGGGATTCGTCTG 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 819 CTCTGTAGCAACATTAGTGCTGAGTCTCATGATTCCAATGGTGACAATGGGATTCGTTTG 878
Query 1045 GCCATGGACTGGACCTGCAGCATCAGCTACTCTTGCACCATACCTCGTTGGTATCGTTGT 1104
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 879 GCCATGGACTGGACCTGCAGCATCAGCTACTCTTGCACCGTACCTCGTTGGTATCGTTGT 938
Query 1105 TCAGTTTGCATTCGAACAGTACGCAAGATA-TCGTAACTCTCCATCATCTCCTATCATCC 1163
|||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 939 TCAGTTTGCATTCGAACAGTACTCAAGATACT-GTAACTCTCCATCATCTCCTATCATCC 997
Query 1164 CCATCATCTTTCAGGTATACAGACTTCATCAGCTGAACCGAGCGGCGCAACTAGTAACAG 1223
|||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 998 CCATCATCTTTCAGGTATACAGACTTCATCAGCTGAACAGAGCGGCACAATTAGTAACAG 1057
Query 1224 CATTGTCATTTACGGTTAAAGGAGCAGAGGCAACAGTTAATAATCTGGCAATCAAGAAAT 1283
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 CATTGTCGTTTACGGTTAAAGGAGCAGAGGCAACAGTTAATAATCTGGCAATCAAGAAAT 1117
Query 1284 CACTGGGCACACTTTTGAATGTGATACAGGTTTTGGGTGTGATTTCAATCTGGTCTATAT 1343
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1118 CACTGGGTACACTTTTGAATGTGATACAAGTTTTAGGTGTGATTTCAATCTGGTCTATAT 1177
Query 1344 CTAGCTTCCTCATGTGGTTATCATCACCTTCCCAAAACCAGTCTT 1388
| |||||||||||||||||||| || ||||||||||| |||||||
Sbjct 1178 CAAGCTTCCTCATGTGGTTATCGTCTCCTTCCCAAAATCAGTCTT 1222
Score = 137 bits (74), Expect = 2e-31
Identities = 82/86 (95%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 290 ATGGCTGCTAAACTTGTGTCCTCCTCGGCTTCTTCTTTGGTTCCATCCATTTTCTCGCCG 349
|||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 1 ATGGCTGCAAAACTTGTGTCCTCCTCGGCTTCTACTTTGGTTCCGTCCATTTTCTCACCG 60
Query 350 TTTCAACCTCGGAGTTCCTTTCAGTT 375
||||||||||||||||||||||||||
Sbjct 61 TTTCAACCTCGGAGTTCCTTTCAGTT 86
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5