BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63050.1
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496485 jgi|Araly1|496485|fgenesh2_kg.8__2301__AT5G63050.1 2176 0.0
> Ahg496485 jgi|Araly1|496485|fgenesh2_kg.8__2301__AT5G63050.1
Length=1459
Score = 2176 bits (1178), Expect = 0.0
Identities = 1391/1489 (93%), Gaps = 33/1489 (2%)
Strand=Plus/Plus
Query 4 ctctcctatctcttccaatctcctctcctctctatctatccgcgt-ccccatttcttctt 62
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct 1 CTCTCCTATCTCTTCCAATCTCCTCTCCTCTCTATCTATCCGCTTGCCCC-TTTCTTCTT 59
Query 63 ccctctaAAATTCCAATCTTTCTTATTGCttttttttATTCAAAGCTTCAAGATTTTCAC 122
||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 60 CCCTCTAAAATTCCAATCTTTCTCGTTGC-TTTTTTGATTCAAAGCTTCAAGATTTTCAA 118
Query 123 TAGGGTTCTTTCCCTTTCT-CTTATTCGATAAATTCTGTTCTTTTCTTTCGTATTCTCAC 181
|||||||||| ||| |||| |||||| || ||||||||||| ||||||||||||||||||
Sbjct 119 TAGGGTTCTTGCCC-TTCTGCTTATTTGACAAATTCTGTTCCTTTCTTTCGTATTCTCAC 177
Query 182 GGACGAACAAACCCCAAGGCAACGAGCTCATGATTGAGATTGTGGCTTTTGAGTAAATGA 241
||||||||||| || | | |||||||||||||||||||||| |||||||||||||
Sbjct 178 GGACGAACAAA--CC----C--C-AGCTCATGATTGAGATTGTGGCCTTTGAGTAAATGA 228
Query 242 TTCACTGCTCAGCTAGAGACAATGGTGTTGGTAACCCATAAATTGCAGGGTTCACATGTC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 TTCACTGCTCAGCTAGAGACAATGGTGTTGGTAACCCATAAATTGCAGGGTTCACATGTC 288
Query 302 TTGTCTCCTTGGAGTTCGCCAACATGGACCAGAGGCTTG-TGTTTAAAGAGACCTGTTAC 360
||||||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 289 TTGTCTCCTTGGAGTTCACCAACATGGACCAGAGGCTTGAT-TTTGAAGAGACCTGTTAC 347
Query 361 GACAGTGCACTTTGTTGAGAGGAAAGATAAGCATTTACGATTGAAGCAAAAATGTTGTTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GACAGTGCACTTTGTTGAGAGGAAAGATAAGCATTTACGATTGAAGCAAAAATGTTGTTT 407
Query 421 TAGTTTAGGGTCCCCTTGCAACGGTGGATTGAGAGCAAAACCTTTCAGAGTTACATCTTT 480
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 408 TAGTTTAGGGTCCTCTTGCAATGGTGGATTGAGAGCAAAACCTTTCAGAGTTACATCTTT 467
Query 481 TAAAGGTGGCATCCAAAATAATGAATCAGGAGGAAGTGAGGGTGGGAAGAAAGTTACTAA 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TAAAGGTGGCATCAAAAATAATGAATCAGGAGGAAGTGAGGGTGGGAAGAAAGTTACTAA 527
Query 541 TAACTCTGTCAAACTATCTTACCGTTCAGATGATGACGAAAATAATGTGAATGGCTCCCC 600
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 528 TAACTCAGTCAAACTATCTTACCGTTCGGATGATGACGAAAATAATGTGAACGGCTCTCC 587
Query 601 AAAGGCACAGAACACTTCGTTTTCATATACCTCGGAAACAGAGGATTCCATGACAGGGCA 660
||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 588 AAAGGCACAAAACACTTCGTTTTCATATACATCGGAAACAGAGGATTCAATCACAGGGCA 647
Query 661 ACCCGCTATTCAGAAACTATTCAAGAAATGGTTGACATTGTTGCGCACACAGTCACCTAT 720
||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 648 ACCTGCTATTCAGAAACTATTCAAGAAATGGTTAACATTGTTGCGCACGCAATCACCTAT 707
Query 721 TCAAGTGATTGACGAGACTTTAGGAGGAGAACAGGTTCCACAAACGACGAAGCAAGAAAC 780
|||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct 708 TCAAGTGATTGATGAGGCTTTAGGAGGAGAACAGGTTCCACCAGCGACGAAGCAAGAAAC 767
Query 781 TGAAACAGAAATTCGGAAAGCAGAAAGTCTCCAGAGTACCAAAAATACAGTTTGGTCCTG 840
|||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 768 TGAAACAGAAATCCGGAAAACAGAAAGCCTCCAGAGTACCAAAAATACAGTTTGGTCCTG 827
Query 841 GTTTTGGAGTCTAGACGCAGCTATCAAGATTCCGTTGCTGTTATTTGTTCCAGCTTTCCT 900
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 828 GTTTTGGAGTCTAGACGCAGCTATCAAGATTCCATTGCTGTTATTTGTTCCAGCTTTCCT 887
Query 901 AGCTGTTTACGCGATCTGTGGTGCTGAAGTTACAAAGGAATTATCCCCTATGTGGGTGGT 960
||||||| ||||||||| ||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 888 AGCTGTTAACGCGATCTATGGAGCTGAAGTCACAAAGGAATTATCCCCAATGTGGGTGGT 947
Query 961 TGGCCCCTTGATCATCGCCCTTTATATAAAAATGTTCCAAGGACTATGTTCCCTTTACGC 1020
||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 948 CGGCCCCTTGATTGTCGCCCTTTATATCAAAATGTTCCAAGGACTATGCTCCCTTTACGC 1007
Query 1021 CTTCTGCTTCAACCAAACCATCAAAATGATAAGAAACCTACCATCGTATTATCTTGTAGC 1080
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1008 CTTCTGCTTCAACCAAACCATCAAAATGATAAGAAACTTACCATCGTATTACCTTGTAGC 1067
Query 1081 ATACCAATACATTGCCGATGGAAAGCTCAAAGACGACGTTAAAGCTCTAGTGTTTAAACC 1140
|||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||| |||
Sbjct 1068 ATACCATTACATTGCCCATGGAAAGCTCAAAGACGACGTGAAAGCTCTACTGTTTAGACC 1127
Query 1141 AGTGGTGGCCATCAAGAACACAGACTACAAAGAGCTCACACGCACGAAGCTGAAACAGTT 1200
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1128 AGTGGTGGCCATCAAGAACACAGACTACAAAGAGCTCACACGCACAAAGCTGAAACAGTT 1187
Query 1201 CCAAGAATGGATCATTGAGAAATACCTGGATTTTGTTGAATCTGTATGGCCTTATTACTG 1260
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1188 CCAAGAATGGATCGTTGAGAAATACCTGGATTTTGTTGAATCGGTATGGCCTTATTACTG 1247
Query 1261 CAGAACTATCAGATTCCTGAAGAGGGCTAACCTGATTTGAAGATCTTCAACATGGAACCC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 CAGAACTATCAGATTCCTGAAGAGGGCTAACCTGATTTGAAGATCTTCAACATGGAACCC 1307
Query 1321 TCAAATTCTGACTTCTCAGGGCTTCTCTATGATTTCTCTCTGTGCTTTGTTTACCttttt 1380
| | || | |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1308 T----T-CT--C-----AGGGCTTCTCTATGATCCCTCTCTGTGCTTTGTTTACCTTTTT 1355
Query 1381 ttttttttttCTTAATTTTAGGAAGGCTTTTCATGTTGTTTGTTCTTATCTCTATGTATA 1440
||| || ||||||||||||||||||||||||||| | |||| || |||| |||||||
Sbjct 1356 TTTATT----CTTAATTTTAGGAAGGCTTTTCATGTT-TATGTTGTTGTCTCCATGTATA 1410
Query 1441 CTGATACCTTTTTTGAGGTTTTACAATGAGTTCTTTTAATATTAAGGGT 1489
||| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1411 CTGTTATCTTTTTTGAGGTTTTACAATGAGTTCTTTTACTATTAAGGGT 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55992660150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5