BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63060.1
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496486 jgi|Araly1|496486|fgenesh2_kg.8__2302__AT5G63060.1 1332 0.0
> Ahg496486 jgi|Araly1|496486|fgenesh2_kg.8__2302__AT5G63060.1
Length=1011
Score = 1332 bits (721), Expect = 0.0
Identities = 955/1059 (90%), Gaps = 52/1059 (5%)
Strand=Plus/Plus
Query 1 CGCAAAATTCCAAATTCTGAATTCTTCTTGCTCTGTGGTGAACAAAGCCCAGCTTTTGAA 60
|||||||| ||||||||||||||| | | |||||||||||| ||||||||||||||||||
Sbjct 1 CGCAAAATGCCAAATTCTGAATTC-T-TAGCTCTGTGGTGAGCAAAGCCCAGCTTTTGAA 58
Query 61 ACTTCCGAATTC--CTCTCATCAATCTAATTTCTGAGAATCAAACTCTAAAGAGTAAATT 118
| || | ||| | || | ||| | ||| | ||||||| | | ||| || |
Sbjct 59 A-TTTC--TTTCAAGT-TC-TGAAT-TCCTTTAT--CAATCAAA-T-TTCTGAG--AA-T 105
Query 119 TTTACTCCTTGTAGTCAATGTCGATTCGTTTCAGCTCAACCATCGTTGCTGCTTCAGTCA 178
||| | || |||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 106 CAAACT-C---TA--AAATGTCGATTCGTTTCGGTTCAACCCTCGTTGCTGCTTCAGTCA 159
Query 179 ATTTCAAAAGCTCGAAGAATTTGAACATTAATCGATCTCGGAACTGCAGATTCTCTGTCC 238
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 160 ATTTCAAAAGCTCGAAGAATTTGAAAATTAATCGATCCCGGAACTGCAGATTCTCTGTCC 219
Query 239 GAAGTTGCGTGTCTGAATCCCAACATGCGCACAAGCTAGTTTTGGAAGTAAAAGAACGGC 298
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 220 GGAGTTGCGTGTCTGAATCCCATCATGCGCACAAGCTAGTTTTGGAAGTAAAAGAACGGC 279
Query 299 TTGCGAAAGATTGTACTAGTCTCCCACTTGGCAAATATGGAAGAGATGATGAGGATATGA 358
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 280 TTGCCAAAGATTGTACTAGTCTCCCTGTTGGCAAATATGGAAGAGATGATGAGGATATGA 339
Query 359 TCCTCTGGTTTTTGAAAGATCGCAGATTTTCTGTTGATGAAGCCATTGGAAAGCTAACTA 418
||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 340 TCCTCTGGTTTTTAAAAGATCGGAGATTTTCAGTTGATGAAGCTATTGGAAAGCTAACTA 399
Query 419 AAGCTATTAAATGGCGTCATGAGTTCAAGGTAGATGAGCTTTCTGAAGATTCTATTAAAG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 400 AAGCTATTAAATGGCGTCATGAGTTCAAGGTAGATGAGCTTTCTGAAGATTCTATCAAAG 459
Query 479 CAGCTACTGACACTGGAAAAGCCTATGTACATGGTTTTCTAGATGTTAAAGGTCGGCCAG 538
||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| ||||
Sbjct 460 CAGCTACTGACACAGGAAAAGCCTTTGTCCATGGTTTTCTAGATGTTAAAGGTCGACCAG 519
Query 539 TGGTTATTGTAGCTCCTGCAAAGCACATCCCCGGGCTGCTTGATCCAATAGAAGATGAAA 598
|||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 520 TGGTTATTGTTGCTCCTGCAAAGCACATCCCCGGGCTACTTGACCCAATAGAAGATGAAA 579
Query 599 AGCTTTGTGTGTT-CTTACTTGAAAAGGCTTTAAGTAAGTTACCAGCAGGACAACACAAG 657
||||||||||||| ||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 580 AGCTTTGTGTGTTCCTT-CTTGAGAAGGCTTTAAGTAAGTTACCAGCAGGGCAACACAAG 638
Query 658 ATACTTGGGATATTTGATCTCCGTGGATTCGGATCTCAGAACGCAGATCTTAAGTTCTTG 717
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 639 ATACTCGGGATATTTGATCTCCGTGGATTCGGATCTCAAAACGCAGATCTTAAGTTCTTG 698
Query 718 ACTTTCCTGTTTGACGTATTTTACTATTACTATCCAAGCCGATTGGATGAAGTCCTTTTT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 ACTTTCCTGTTTGACGTATTTTACTATTACTATCCAAGCCGATTGGATGAAGTCCTTTTT 758
Query 778 GTAGATGCTCCATTCATATTTCAGCCAATTTGGCAATTCACTAAACCGTTGGTGAAGCAA 837
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 759 GTAGATGCTCCATTCATATTCCAGCCAATTTGGCAATTCACCAAACCGTTGGTGAAGCAA 818
Query 838 TACGCTTCTCTGGTCAAGTTTTGCTCAGCAGAGACCGTCAGAAAGGAGTACTTTACTGAA 897
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 819 TACGCTTCTCTGGTCAAGTTTTGCTCAGCAGAGACCGTGAGAAAGGAGTATTTTACTGAA 878
Query 898 GAAACATTACCATCAAATTTCCGGAGCTAAAGAGGTTTATAAGAGACCTTTAAGCACTTA 957
|||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 879 GAAACATTACCATCAAATTTCCGGAGCTAAAGAGGTTT-T--------T-----C--TT- 921
Query 958 TTTCTTCTGTTGTTGTCGATTTATATGTGTATAGATAATTTTTAAGTATGGAG-AAAAGG 1016
|| |||||||||||| || ||||||||||||||||| |||||||||| ||||||
Sbjct 922 ---CT---GTTGTTGTCGATATAAATGTGTATAGATAATTTG-AAGTATGGAGTAAAAGG 974
Query 1017 GATAACCCTTAATATTAAAAGAACTCATTGTAAAACCTC 1055
||| ||||||||| ||||||||||||||||||||||||
Sbjct 975 -ATA-CCCTTAATAGTAAAAGAACTCATTGTAAAACCTC 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39266604510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5