BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G63063.1

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg358516 jgi|Araly1|358516|fgenesh1_pg.C_scaffold_8002303           318    9e-87
  Ahg918087 jgi|Araly1|918087|Al_scaffold_0008_2838                    102    1e-21
  Ahg332533 jgi|Araly1|332533|fgenesh1_pm.C_scaffold_8001876          62.1    2e-09


> Ahg358516 jgi|Araly1|358516|fgenesh1_pg.C_scaffold_8002303
Length=372

 Score =  318 bits (172),  Expect = 9e-87
 Identities = 195/205 (95%), Gaps = 6/205 (3%)
 Strand=Plus/Plus

Query  1    ATGGAGAGCAAATGGAGTGTGGTGATGATGGTGTACTTAGTTTTTGTGGTGATGGCTGCC  60
            |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  1    ATGGAGAGCAAATGGAGTGTGGTGATGATGGTGTACTTCGTTTTTGTGGTGATTGCTGCC  60

Query  61   ATTGGAGGAGAAGCACAAG---ATCTTTCATGTGAAACGAAATGTGCAATCACCTGCAAA  117
            ||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATTGGAGGAGAAGCAGAAGATCATCTTTCATGTGAAACGAAATGTGCAATCACCTGCAAA  120

Query  118  GATTCGATGTTCCCTAAAAAATGCTCATCCAAGTGTTTGGAAAGTTGTAGACGACATTAT  177
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||
Sbjct  121  GATTCGATGTTCCCTAAAAAATGCTCAACCAAGTGTTTGGAAAGTTGTAGACG---TTAT  177

Query  178  CCACCTACTCAACTTCACACTCGCA  202
            |||||||||||||||||||||||||
Sbjct  178  CCACCTACTCAACTTCACACTCGCA  202


> Ahg918087 jgi|Araly1|918087|Al_scaffold_0008_2838
Length=249

 Score =  102 bits (55),  Expect = 1e-21
 Identities = 98/117 (84%), Gaps = 9/117 (8%)
 Strand=Plus/Plus

Query  1    ATGGAGAGCAAATGGAGTGTGGTGATGATGGTGTACTTAGTTTTTGTGGTGATGGCTGCC  60
            |||||||  ||||||||||||||||||||| ||   || ||||| |||||||||||||||
Sbjct  1    ATGGAGAAAAAATGGAGTGTGGTGATGATGATG---TTGGTTTTGGTGGTGATGGCTGCC  57

Query  61   ATTGGAGGAGAAGCACAAGATC-TTTCATGTGAAA--CGAAATGTGCAATCACCTGC  114
            |||||||||||||||  ||||| ||| |||| | |  | ||||||| |||||| |||
Sbjct  58   ATTGGAGGAGAAGCAGTAGATCATTT-ATGT-ACATTC-AAATGTGAAATCACTTGC  111


> Ahg332533 jgi|Araly1|332533|fgenesh1_pm.C_scaffold_8001876
Length=228

 Score = 62.1 bits (33),  Expect = 2e-09
 Identities = 35/36 (97%), Gaps = 0/36 (0%)
 Strand=Plus/Plus

Query  40  GTTTTTGTGGTGATGGCTGCCATTGGAGGAGAAGCA  75
           ||||| ||||||||||||||||||||||||||||||
Sbjct  37  GTTTTGGTGGTGATGGCTGCCATTGGAGGAGAAGCA  72



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7943158288


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5