BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G63070.1

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951102 jgi|Araly1|951102|scaffold_802989.1                        776    0.0  


> Ahg951102 jgi|Araly1|951102|scaffold_802989.1
Length=523

 Score =  776 bits (420),  Expect = 0.0
 Identities = 462/483 (96%), Gaps = 0/483 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGATCAACGAACCAGAGTTTGCCACGGCCGTGGCGGTGGCAACAAAGAAGAGAACG  60
            ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  21   ATGGCGATCAACGAATCAGAGTTTGCCACGGCCGTGGCGGTGGCGACAAAGAAGAGAACA  80

Query  61   TTCAAGAAATTCTCATTCAGAGGGTTCAACGTTGATGCTCTGCTCAAAATGTCAAACGTT  120
            ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct  81   TTCAAGAAATTCTCATTCAGAGGATTCAACGTCGATGCTCTTCTCAAAATGTCAAACGTT  140

Query  121  GATCTCGCTAAGCTCTTCAACGCTCGTGTTCGCAGAAGATTCTACAGAGGATTAAAGAAG  180
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  141  GATCTCGCTAAGCTCTTCAACGCTCGTGTTCGCAGAAGATTCTATAGAGGATTAAAGAAG  200

Query  181  CAACCTCTGATTCTGATCAAGAAGCTACGAAGGGCGAAGAAAGAAGCAAGCGATGAGAAC  240
             |||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct  201  AAACCTCTGATTCTGATCAAGAAGCTACGGAGGGCGAAAAAAGAAGCAAGTGATGAGAAC  260

Query  241  AAGATGAAGCCTGAAGTGGTGAAAACACATCTAAGGAACATGATCATTGTCCCTGAGATG  300
            |||| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  261  AAGAAGAAGCCTCAAGTAGTGAAAACACATCTAAGGAACATGATCATTGTCCCCGAGATG  320

Query  301  ATTGGAAGTGTTGTCGGAGTGCACAATGGAAAGAAGTTTAATGAAATCGTGATTAAACCT  360
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  321  ATTGGAAGTGTTGTCGGAGTTCACAATGGAAAGAAGTTTAATGAAATCGTGATTAAGCCT  380

Query  361  GAGATGATTGGTCATTATCTTGCGGAGTTTTCGATGACTTGCAAGAAGGTTAATCACCAT  420
            ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct  381  GAGATGATTGGTCATTATCTTGCGGAGTTTTCGTTAACTTGCAAGAAGGTTAATCACTAT  440

Query  421  AGACCACGTATTTGTGGTTGTTGTTGTTTCCGTCGGTCCACCAGGTTTATTCCTCTCAGG  480
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  441  AGACCACGTATTTGTGGTTGTGGTTGTTTCCGTCGGTCCACCAGGTTTATTCCTCTCAGG  500

Query  481  TGA  483
            |||
Sbjct  501  TGA  503



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17513415351


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5