BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63080.1
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332532 jgi|Araly1|332532|fgenesh1_pm.C_scaffold_8001875 2034 0.0
> Ahg332532 jgi|Araly1|332532|fgenesh1_pm.C_scaffold_8001875
Length=1377
Score = 2034 bits (1101), Expect = 0.0
Identities = 1290/1379 (94%), Gaps = 21/1379 (2%)
Strand=Plus/Plus
Query 124 ATGGGAATACAGATTATAGGTCAAATTGAGAGAATCAATGGTAAAGAGCTGAGTTACGGC 183
||||||||| ||||| ||||||||||||||||| ||||||| |||||| ||||||||| |
Sbjct 1 ATGGGAATAGAGATTGTAGGTCAAATTGAGAGAGTCAATGGCAAAGAGTTGAGTTACGTC 60
Query 184 GATTTTGCAGAGAGATACTTAGCTAAGAACCAGCCAGTGGTAATATCCGATCTCACTGAA 243
||||||||||||| ||||||||| |||||||||||| |||| || ||| |||||||||||
Sbjct 61 GATTTTGCAGAGAAATACTTAGCCAAGAACCAGCCACTGGTCATCTCCAATCTCACTGAA 120
Query 244 GATTGGCGAGCTCGGGAAGATTGGGTCAGTGAGAATGGAAACCCTAATCTCCACGTATTT 303
||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct 121 GATTGGCGAGCTCGGGAAGATTGGGTCAGTGAGAATGGACTCCCTAATCTCCACTTCTTT 180
Query 304 GCCACTCACTTTGGAAAATCCAGAGTTCAGGTTGCAGATTGTGATACGAGAGAATTTACA 363
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 181 GCCACTCACTTCGGAAAATCCAGAGTTCAGGTTGCAGATTGTGATACAAGAGAATATACA 240
Query 364 GATCAGAAAAGATTAGAAATGTCTGTTACTGAATTTGTGGAGCAATGGACTAATAAGGAT 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 GATCAGAAAAGATTAGAAATGTCTGTTACTGAATTTGTGGAGCAATGGACTAAT----A- 295
Query 424 TCTATTGAGGAATCTGTTTTGTATCTGAAAGATTGGCACTTTGTGAAGGAGTATCCAGAC 483
| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ---A-T---GATTCTGTTTTGTATCTGAAAGATTGGCACTTTGTGAAGGAGTATCCAGAC 348
Query 484 TATACAGCTTACCAAACACCGCCGTTGTTTTCTGATGATTGGCTTAACGTGTATCTAGAC 543
||||||||||| ||||| |||| ||||||||||||||||||||||| | |||||||||
Sbjct 349 TATACAGCTTATCAAACGCCGCAACTGTTTTCTGATGATTGGCTTAACATATATCTAGAC 408
Query 544 AATTACCAAATGCATGAGGATAGAGATAGTTTCCAGAAGTATGATCAAATAAGCTGCTCT 603
| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 409 AGTTACCAAATGCATGAGGATAGAGATAATTTCCACAAGTATGATCAAATAAGCTGCTCT 468
Query 604 GATTATCGGTTTGTTTATATGGGTGGGAAAGGATCTTGGACACCTCTACATGCTGATGTA 663
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 469 GATTATCGTTTTGTTTATATGGGTGGAAAAGGATCTTGGACACCTCTACACGCTGATGTA 528
Query 664 TTTAGATCTTATAGTTGGTCAGCTAATGTCTGTGGTaaaaaaaGATGGCTTTTCCTTCCT 723
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 529 TTTAGATCTTATAGTTGGTCAGCTAATGTCTGTGGTAAAAAAAGATGGCTTTTTCTTCCT 588
Query 724 CCTCCTCAAAGTCATCTTGTTTATG--A--CA-G-GTACATGAAAAATTGCGTTTATGAC 777
|||| |||||||||||||||||||| | || | |||||||||||||||| ||||||||
Sbjct 589 CCTCTTCAAAGTCATCTTGTTTATGACAGGCAGGTGTACATGAAAAATTGCATTTATGAC 648
Query 778 ATTTTTGAAGAGGTGAATGAAACTAAATTCCCTGGTTTTAAGAAGACCACCTGGCTTGAG 837
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 ATCTTTGAAGAGGTGAATGAAACTAAATTCCCTGGTTTTAAGAAGACCACCTGGCTTGAG 708
Query 838 TGCATTCAAGAACCCGGTGAAATTATCTTTGTTCCCAGTGGATGGCATCATCAAGTATAT 897
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 709 TGCATTCAAGAACCCGGTGAAATTATATTTGTTCCGAGTGGATGGCATCATCAAGTATAT 768
Query 898 AACTTGGAAGACACAATATCTATTAACCACAATTGGCTCAACGCATACAACCTATCTTGG 957
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 769 AACTTGGAAGACACAATATCCATTAACCACAATTGGCTCAACGCATACAACCTATCTTGG 828
Query 958 GTGTGGGATCTACTGTGGAAGGACTACAAGGACACTGAAGAGTCAATAGAAGACATAAGA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GTGTGGGATCTACTGTGGAAGGACTACAAGGACACTGAAGAGTCAATAGAAGACATAAGA 888
Query 1018 GACATATGTGATGATTTTGAAGCTATCTGCCAACGTAATCTTGCTGCCAACACAGGAATG 1077
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GACATCTGTGATGATTTTGAAGCTATCTGCCAACGTAATCTTGCTGCCAACACAGGAATG 948
Query 1078 AATTTAAATGATTTCTTCCTCTTCATGTCACGGTTCTCTTTGGGGAACATGGTTCTACTG 1137
||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 949 AATTTGAATGACTTCTTCATCTTCATGTCACGGTTCTCTTTGGGGAACATGGTTGTACTG 1008
Query 1138 CAATCTTACTCTGACAAACACAAAAACCTGAATTCGTGTTCATTAGCAATGGCCCAAAAC 1197
|||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 1009 CAATCTTACTCTGACAAACACAAAGCCCTGAATTCGTGTTCATCAGCAATGGCACAAAAT 1068
Query 1198 CTGTTAATGAATCTCTCAACTATACTGAAAGTCATGATGAAGATGATATCTGCAGGCGGT 1257
|||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 1069 CTGTTATTGAATCTCTCAACTATAAGGAAAATCATGATGACGATGATATCTGCAGGCGGT 1128
Query 1258 GTAACTGCAGAGGAAGTGTATCTGGACTTGCGAGAAACACTGGAGGATCCACAGTTTCTC 1317
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1129 GTAACTTCAGAGGAAGTGTATATGGACTTGCGAAAAACACTGGAGGATCCACAGTTTCTC 1188
Query 1318 AGATTTGTCAGAGACATGGGAAGAACTTATGCAAGGATTCACATGGAGGAAGAGGATCAG 1377
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1189 AGATTGGTCAGAGACATGGGAAGAACTTATGCAATGATTCACATGGAGGAAGAGGATCAG 1248
Query 1378 TTTCTTTCTTCGAAAGAATTATTACAAAAGCTCAGTGGTCTTGCAGGTCCAAATATGCAA 1437
|| | ||||| |||| ||||||||||||||||||||| |||||| |||||| ||||||
Sbjct 1249 GTT-T--CTTCGGAAGAGTTATTACAAAAGCTCAGTGGTTTTGCAGATCCAAAGATGCAA 1305
Query 1438 ATATGTTCTCCAAAGGATCTTGTTGAAATGATAAACCATCACAATACTTTTTCCTCCCA 1496
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1306 ATATGTTCTCCAAAGGATCTTGTTGAAATGATAAATCATCACAATACTTTTTTCTCCCA 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60068316365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5