BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63085.1
Length=379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918087 jgi|Araly1|918087|Al_scaffold_0008_2838 235 2e-61
> Ahg918087 jgi|Araly1|918087|Al_scaffold_0008_2838
Length=249
Score = 235 bits (127), Expect = 2e-61
Identities = 216/256 (84%), Gaps = 17/256 (7%)
Strand=Plus/Plus
Query 49 ATGGATAAAAAATGGAGTGTGGTGATGATGATGTTCGTTTTGGTAGTGATGGCTGCCAGT 108
||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
Sbjct 1 ATGGAGAAAAAATGGAGTGTGGTGATGATGATGTTGGTTTTGGTGGTGATGGCTGCCATT 60
Query 109 GGAGGAGAAGCAGCA-AGTCACTCATGTACATTAAAATGTGAACTCACTTGCAGCGA-CT 166
||||||||||||| | | ||| | ||||||||| ||||||||| |||||||| |||| |
Sbjct 61 GGAGGAGAAGCAGTAGA-TCATTTATGTACATTCAAATGTGAAATCACTTGCCGCGATCC 119
Query 167 GGGAGTTCAAAACACCTTGTTTCAAACAGTGTATGGCCGCATGCGAGCATCATCC---AT 223
|| |||||| |||||||| |||||| |||||||||| | |||| |||||| ||| ||
Sbjct 120 GG-AGTTCATTACACCTTGCTTCAAAAAGTGTATGGCTGAATGCCAGCATCGTCCTCCAT 178
Query 224 CTACAAGTACTCCTTCT-TCAATGAAATCCACAGTCGCAGAT-A---CTAAACCGATGGA 278
|||||||||| ||||| ||||| || |||||||||||| | ||||| |||||||
Sbjct 179 CTACAAGTAC-CCTTCACTCAATT---TC-ACAGTCGCAGATGAAGACTAAAGCGATGGA 233
Query 279 AGAAATGAGAGGGTAG 294
||||| ||||||||||
Sbjct 234 AGAAACGAGAGGGTAG 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13545234095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5