BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G63087.1

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg332533 jgi|Araly1|332533|fgenesh1_pm.C_scaffold_8001876           196    6e-50
  Ahg918087 jgi|Araly1|918087|Al_scaffold_0008_2838                   89.8    1e-17


> Ahg332533 jgi|Araly1|332533|fgenesh1_pm.C_scaffold_8001876
Length=228

 Score =  196 bits (106),  Expect = 6e-50
 Identities = 171/199 (86%), Gaps = 17/199 (9%)
 Strand=Plus/Plus

Query  53   ATGGAGAACAAGTAC-TCGAGTGTTGTGATGATTTTGGTTTTGGTGGTGATGGCTGCCAT  111
            ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGAACAAGTACAT-GAGTGTTGTGATGATTTTGGTTTTGGTGGTGATGGCTGCCAT  59

Query  112  TGGAGGAGAAGCA-T-C-AG-A--TC-TTTCATGTGAACAGAAATGTAGATCAGCATGC-  163
            ||||||||||||| | | || |  || ||| |||||||||||||||||||||||| ||| 
Sbjct  60   TGGAGGAGAAGCAGTGCCAGTAGATCCTTT-ATGTGAACAGAAATGTAGATCAGCCTGCC  118

Query  164  GCTGGCGGCAAGGGTTTC-GTACACCTTCCGGAGTGCTACATTGACTGTGTACGAAAATG  222
            || | |||| | |||||| | || |||||||||||||||||  |||||||| ||||   |
Sbjct  119  GCAG-CGGCCACGGTTTCAGCAC-CCTTCCGGAGTGCTACACAGACTGTGTTCGAAG--G  174

Query  223  CAAGGACATTCCACCTACG  241
            ||| | | |||||||||||
Sbjct  175  CAATG-CTTTCCACCTACG  192


> Ahg918087 jgi|Araly1|918087|Al_scaffold_0008_2838
Length=249

 Score = 89.8 bits (48),  Expect = 1e-17
 Identities = 79/92 (86%), Gaps = 10/92 (11%)
 Strand=Plus/Plus

Query  53   ATGGAGAACAAGTACTCGAGTGT--TG-TGATGATTTTGGTTTTGGTGGTGATGGCTGCC  109
            |||||||| ||  | | ||||||  || ||||||| ||||||||||||||||||||||||
Sbjct  1    ATGGAGAA-AA--AATGGAGTGTGGTGATGATGATGTTGGTTTTGGTGGTGATGGCTGCC  57

Query  110  ATTGGAGGAGAAGCA-TCAGATC-TTTCATGT  139
            ||||||||||||||| | ||||| ||| ||||
Sbjct  58   ATTGGAGGAGAAGCAGT-AGATCATTT-ATGT  87



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10454631386


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5