BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63090.2
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951108 jgi|Araly1|951108|scaffold_802995.1 979 0.0
> Ahg951108 jgi|Araly1|951108|scaffold_802995.1
Length=608
Score = 979 bits (530), Expect = 0.0
Identities = 577/598 (96%), Gaps = 9/598 (2%)
Strand=Plus/Plus
Query 359 TAAGAAGAAA-AACAAATGGCGTCGTCATCAAACTCATACAACTCACCATGCGCGGCGTG 417
||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 TAA-AAGAAAGAAC--ATGGCGTCGTCATCAAACTCATACAACTCACCATGCGCGGCGTG 71
Query 418 CAAGTTTCTTCGCCGGAAATGCATGCCGGGATGCATATTCGCGCCATATTTTCCACCGGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 CAAGTTTCTTCGCCGGAAATGCATGCCGGGATGCATATTCGCGCCATATTTTCCACCGGA 131
Query 478 GGAGCCACACAAATTCGCCAACGTCCACAAAATCTTTGGAGCAAGCAACGTCACGAAGCT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 GGAGCCACACAAATTCGCCAACGTCCACAAAATCTTTGGAGCAAGCAACGTCACGAAGCT 191
Query 538 CCTCAACGAGCTCCTCCCTCACCAACGTGAAGACGCAGTCAACTCCTTAGCCTATGAGGC 597
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CCTCAATGAGCTCCTCCCTCACCAACGTGAAGACGCAGTCAACTCCTTAGCCTATGAGGC 251
Query 598 CGAGGCACGTGTCCGTGACCCCGTCTATGGCTGCGTCGGAGCCATCTCTTATCTCCAGAG 657
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 252 CGAGGCACGTGTCCGTGACCCAGTCTATGGCTGCGTCGGAGCCATCTCTTATCTCCAGAG 311
Query 658 ACAAGTCCATAGGCTTCAGAAGGAGCTCGACGCAGCTAATGCTGACTTGGCACATTATGG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 ACAAGTCCATAGGCTTCAGAAGGAGCTCGACGCAGCTAATGCTGACTTGGCACATTATGG 371
Query 718 TTTGTCCACATCAGCCGCCGGAGCACCTGGCAACGTCGTGGACTTGGTTTTTCAGCCTCA 777
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 372 TTTGTCCACATCAGCCGCCGGAACACCTGGCAACGTCGTGGACTTGGTTTTCCAGCCTCA 431
Query 778 GCCGCTTCCGTCGCAGCAACTGCCTCCCTTGAACCCGGTTTATAGGCTTTCGGGGGC-AA 836
|||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||||| ||
Sbjct 432 GCCGCTTCCGCCGCAGCAACCGCCTCCGTTGAATCCGGTTTATAGGCTTTCGGGGGCGAA 491
Query 837 GTCCGGTGATGAATCAGATGCCACGTGGCACCGGAGGGTCGTATGGGACTTTTCTTCCTT 896
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 492 -TCCGGTGATGAGTCAGATGCCACGTAGCACCGGAGGGTCGTATGGGACTTTTCTTCCTT 550
Query 897 GGAACAATGGTCATGATCAGCAAGGAGGTAACATGTGAGAGTTTATAAATTATGAGTA 954
||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 551 GGAACAATGGTCATGATCAGCAAGG---TAACATGTGAGATTTTATAAATTATGTGTA 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40410292020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5