BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63100.1
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496492 jgi|Araly1|496492|fgenesh2_kg.8__2308__AT5G63100.1 1605 0.0
> Ahg496492 jgi|Araly1|496492|fgenesh2_kg.8__2308__AT5G63100.1
Length=1232
Score = 1605 bits (869), Expect = 0.0
Identities = 985/1042 (95%), Gaps = 3/1042 (0%)
Strand=Plus/Plus
Query 1 CAGGCATGGCCAGGGAGCTTGTGTCTCTTCAATACCTCCGACCTCCACTTCACATTTCTC 60
||| |||||| ||||||||||||||||| ||| | ||||||| || |||||||||||||
Sbjct 1 CAGACATGGCGAGGGAGCTTGTGTCTCTCCAAAATGTCCGACCACCTCTTCACATTTCTC 60
Query 61 GTCAATTTCTAAACCTCTCTTCTCCTCCTTTAACTCTCAATCTCCGGCCAAAACCTCCGC 120
||||||| || ||| ||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 61 GTCAATTCCTCAACTTCTCTCCTCCTCCTTCAACTCTCAATCTCCGGCCAAAACCTCCGC 120
Query 121 AAAATCCAATCTTTATCCGAACCGACTCTCACCGCAACAAAACTTCCGCCGACGATAACG 180
|||| |||||||||||||||||| |||||||||||| |||||||||||||||||| |||
Sbjct 121 AAAACCCAATCTTTATCCGAACCAACTCTCACCGCACCAAAACTTCCGCCGACGACGACG 180
Query 181 GAATCCCAGCAGAGGACGTCAAAACCATCGCCAAATTCAAATCCCGTCACAATTACATCA 240
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 GAATCCCAGCAGACGACGTCAAAACCATCGCCAAATTCAAATCCCGTCACAATTACATTA 240
Query 241 GAGTCATCGAAGTTTCACGAAAAACCAATCACCCACTCGCTGGTTCTCGTCTCCTCCTTC 300
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGTCATTGAAGTTTCCCGAAAGACCAATCACCCACTCGCTGGTTCTCGTCTCCTCCTTC 300
Query 301 TCGATAATCCCGGTAACATCCATAGCATCTCTTTCCTTCTTAAAACCTTAACCGATAGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGATAATCCCGGTAACATCCATAGCATCTCTTTCCTTCTTAAAACCTTAACCGATAGTT 360
Query 361 ACTTCGACGTTTTCGCTACTCTGCCTCCGATTATACCTCCCGGACCAATTGGTATTCTCG 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 ACTTCGACGTTTTCGCTACTCTGCCTCCGATTATACCTCCCGGACCAATCGGTATTCTCG 420
Query 421 GATTCGGAGCTGGTTCAACAGCTAGATTGATTCTTGAGCTTTATCCTCCTGAGATCGCTG 480
|||||||||| |||||||| || | || ||||| |||||||| |||||||| ||||||
Sbjct 421 GATTCGGAGCCGGTTCAACGGCCCGGTTAATTCTCGAGCTTTACCCTCCTGAAATCGCTA 480
Query 481 TCCATGGATGGGAACTTGACCCTTCCGTGATTGACGTTGGTAGAGAGTTCTTTGGTCTCT 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 TCCATGGATGGGAACTTGACCCTTCTGTGATTGACGTTGGTAGAGAGTTCTTTGGTCTCT 540
Query 541 CTAAGCTCGAAAGAGATCATAAAGATAGGATTTTTATCAACATTGGTGATGCTTTGAACG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTAAGCTCGAAAGAGATCATAAAGATAGGATTTTTATCAACATTGGTGATGCTTTGAACG 600
Query 601 CTAGTGTTAAAACCGGGTTTTCGGGTATTTTAGTGGATTTGTTTAGTAAAGGGAGTGTGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTAGTGTTAAAACCGGGTTTTCGGGTATTTTAGTGGATTTGTTTAGTAAAGGGAGTGTGA 660
Query 661 TCAAAGAGCTTCAAGATCCTCAAGTGTGGGAGGATTTGAAATCTAGGTTGA-GATATAGA 719
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 661 TCAAAGAGCTTCAAGATCCTCAAGTGTGGGAGGATTTGAAATGTAGGTTGAAGA-ATAGA 719
Query 720 GGGAGGATTATGGTGAATGTTGGAGGTAAATGTGTGGAAGCTGAGGATTCAGATAGAGAT 779
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 720 GGGAGGATTATGGTGAATGTTGGAGGTAAATGTGTGGAAGCTGAGGATTCTGAGAGAGAT 779
Query 780 GGAGCTTTGGTTATGGAGGAAACGTTGAGAGTGATGAGTCAGGTTTTTGGAGATAAGCTA 839
|||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 780 GGAGGTTTGGTTATGGAGGAAACGTTGAAAGCCATGAGTCAGGTTTTTGGAGATAAGCTC 839
Query 840 TTTGTTCTAACGCTTGGGAATGGGAATGATAGCTCGGTAGCTTTAACGGGTGATTTACCG 899
||||||||||||||||| ||||||||||||||||| || ||| | ||||| || ||||||
Sbjct 840 TTTGTTCTAACGCTTGGCAATGGGAATGATAGCTCAGTGGCTCTCACGGGCGACTTACCG 899
Query 900 GATCTTGATGCGTGGAAGAAGAGATTACCGCGTAGTGAATTGAGAAGCTATGTTGATATG 959
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 900 GATCTTGATGCGTGGAAGAAGAGATTACCGCGTAGTGAATTGAGAAGTTATGTTGATATG 959
Query 960 TGGATACCTTATAGAGAATTCTGCTTGAGATATTAGTCTTTAGATGATATTGGTTGATAA 1019
||||||||||||||||||||| |||||||||||||| ||| ||||||| |||||||||||
Sbjct 960 TGGATACCTTATAGAGAATTCAGCTTGAGATATTAGCCTT-AGATGATCTTGGTTGATAA 1018
Query 1020 TCAGTTTTTGTGATGGATGCTG 1041
||||||||||||||||||||||
Sbjct 1019 TCAGTTTTTGTGATGGATGCTG 1040
Score = 255 bits (138), Expect = 4e-67
Identities = 187/208 (90%), Gaps = 13/208 (6%)
Strand=Plus/Plus
Query 1074 CTGATTAGCTAATACACAAAACTTGTTCTGTCTCAGAGAGTGTTTGTTACAAGTGTACAA 1133
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1038 CTGATTAGCTAATACACAAAACTTGTTCTGTCTCAGAGAGTGTT----ACAAGTGTATAA 1093
Query 1134 ATTATTGCTTGGTCATCGTGTCTTTATTGGTGATGAATATTAAGGTTGTCTAGTTCTTTC 1193
|||||||||||| ||| |||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1094 ATTATTGCTTGGCCATTGTGTCTTTATTGTTGATGAATCTTAAGGTTGTCTAGTTCTTTC 1153
Query 1194 AGAGGGATTGAGAATTTGAGATTACTCATTACTGTTATGTATGATTTGTTCTGGTATTAT 1253
| ||| || || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1154 AC-GGG---GA---TT-GAGATTACTCATTACTGTTATGTATGATTTGTTCTGGTATT-T 1204
Query 1254 TAAACCTAAATTCGACAATGATCTTTGT 1281
| ||||||||||||||||||| ||||||
Sbjct 1205 TGAACCTAAATTCGACAATGAACTTTGT 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48301735839
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5