BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63110.1
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496493 jgi|Araly1|496493|fgenesh2_kg.8__2309__AT5G63110.1 2782 0.0
Ahg897670 jgi|Araly1|897670|Al_scaffold_0005_1636 307 2e-82
> Ahg496493 jgi|Araly1|496493|fgenesh2_kg.8__2309__AT5G63110.1
Length=1725
Score = 2782 bits (1506), Expect = 0.0
Identities = 1660/1734 (96%), Gaps = 11/1734 (1%)
Strand=Plus/Plus
Query 15 TAGTAATGACTTTCTCAGGCATTGTTGACACAAATTTTGCTCTGAGT-AAAACTTGGGAA 73
|||||||||||||||||||||| || |||||||||||||||| |||| |||||||||| |
Sbjct 1 TAGTAATGACTTTCTCAGGCATAGTAGACACAAATTTTGCTCGGAGTAAAAACTTGGGGA 60
Query 74 TagagagagactctgagtgagagagagattctgagtgagagacggagatggagGCAGACG 133
||||||||||| || | ||| |||| || |||||||| |||||||||||||||
Sbjct 61 TAGAGAGAGACAGAGACTCTGAGTGAGA----GA--GAGAGACGAAGATGGAGGCAGACG 114
Query 134 AAAGCGGCATCTCTCTGCCGTCGGGACCCGACGGACGTAAGCGGCGAGTCAGTTACTTCT 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 AAAGCGGCATCTCTCTGCCGTCGGGACCCGACGGACGTAAGCGGCGAGTCAGTTACTTCT 174
Query 194 ACGAGCCGACGATCGGAGACTACTACTACGGTCAAGGCCACCCGATGAAGCCTCACCGGA 253
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 175 ACGAGCCGACGATCGGAGACTACTACTACGGTCAAGGACATCCGATGAAACCTCACCGGA 234
Query 254 TCCGTATGGCTCATAGCCTAATCATTCACTATCACCTCCACCGTCGCTTAGAAATCAGTC 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TCCGTATGGCTCATAGCCTAATCATTCACTATCACCTCCACCGTCGCTTAGAAATCAGTC 294
Query 314 GCCCTAGCCTCGCTGACGCCTCCGATATCGGCCGATTCCATTCGCCGGAGTATGTTGACT 373
|||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 295 GCCCTAACCTCGCTGACGCCTCCGATATCGGCCGGTTTCATTCGCCGGAGTATGTTGATT 354
Query 374 TCCTCGCTTCCGTTTCGCCGGAATCTATGGGCGATCCTTCCGCTGCACGAAACCTAAGGC 433
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 355 TCCTCGCTTCCGTTTCGCCGGAATCTATGGGCGATCCTTCCTCTTCACGAAACCTAAGGC 414
Query 434 GATTCAATGTCGGTGAGGATTGTCCTGTCTTCGACGGACTTTTTGATTTTTGCCGTGCTT 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GATTCAATGTCGGTGAGGATTGTCCTGTCTTCGACGGACTTTTTGATTTTTGCCGTGCTT 474
Query 494 CCGCCGGAGGTTCTATTGGTGCTGCCGTCAAATTAAACAGACAGGACGCTGATATCGCTA 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CCGCCGGAGGTTCTATTGGTGCTGCCGTCAAATTAAACAGACAGGACGCTGATATCGCTA 534
Query 554 TCAATTGGGGCGGTGGGCTTCACCATGCTAAGAAAAGCGAGGCTTCTGGGTTTTGCTATG 613
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 535 TCAATTGGGGCGGTGGCCTTCACCATGCTAAGAAAAGCGAGGCCTCTGGGTTTTGCTATG 594
Query 614 TAAACGACATCGTGCTAGGGATTCTGGAGTTGCTCAAGATGTTTAAGCGGGTTCTCTACA 673
|||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 595 TAAATGATATCGTTTTAGGGATTCTCGAGTTGCTCAAGATGTTTAAGCGGGTTCTCTACA 654
Query 674 TAGATATTGATGTCCACCATGGAGATGGAGTGGAAGAAGCGTTTTACACCACTGATAGAG 733
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TAGATATCGATGTCCACCATGGAGATGGAGTGGAAGAAGCGTTTTACACCACTGATAGAG 714
Query 734 TTATGACTGTTTCTTTCCACAAATTTGGGGACTTTTTCCCAGGAACTGGTCACATAAGAG 793
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 715 TTATGACTGTTTCTTTCCACAAATTTGGGGACTTTTTCCCCGGAACTGGTCACATAAGAG 774
Query 794 ATGTTGGCGCTGAAAAAGGGAAATACTATGCTCTAAATGTTCCACTAAACGATGGTATGG 853
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 775 ATGTTGGCGCAGAAAAAGGGAAATACTATGCTCTAAATGTTCCGCTAAACGATGGTATGG 834
Query 854 ACGATGAAAGTTTCCGCAGCTTGTTTAGACCTCTTATCCAGAAGGTTATGGAAGTGTATC 913
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ACGATGAACGTTTCCGCAGCTTGTTTAGACCTCTTATCCAGAAGGTTATGGAAGTGTATC 894
Query 914 AGCCAGAGGCAGTTGTTCTTCAGTGTGGTGCTGACTCCTTAAGTGGTGATCGGTTGGGTT 973
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 895 AGCCAGAGGCAGTTGTTCTTCAATGTGGGGCTGACTCGTTAAGTGGTGATCGGTTGGGTT 954
Query 974 GCTTCAACTTATCAGTCAAGGGTCACGCTGATTGCCTTCGGTTCTTAAGATCTTACAACG 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GCTTCAACTTATCAGTCAAGGGTCACGCTGATTGCCTTCGGTTCTTAAGATCTTACAACG 1014
Query 1034 TTCCTCTCATGGTGTTGGGTGGTGGAGGGTATACTATTCGAAATGTTGCCCGTTGCTGGT 1093
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1015 TTCCTCTCATGGTCTTGGGTGGTGGAGGGTATACTATTCGAAATGTTGCTCGTTGCTGGT 1074
Query 1094 GTTATGAGACTGCAGTTGCTGTTGGAGTAGAGCCGGACAACAAACTCCCTTACAATGAGT 1153
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1075 GTTATGAGACTGCAGTTGCTGTTGGAGTAGAGCCAGACAACAAACTCCCTTACAATGAGT 1134
Query 1154 ATTTTGAGTATTTCGGCCCAGATTATACGCTTCATGTCGACCCAAGTCCTATGGAGAATT 1213
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1135 ATTTTGAGTATTTCGGCCCAGATTATACGCTTCATGTCGACCCAGGTCCAATGGAGAATT 1194
Query 1214 TAAACACGCCCAAAGATATGGAGAGGATAAGGAACACGTTGCTGGAACAACTTTCGGGAC 1273
|||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1195 TAAACACGCCAAAAGATATGGAGAAGATAAGGAACACATTGCTGGAACAACTTTCGGGAC 1254
Query 1274 TAATACACGCACCTAGCGTCCAGTTTCAGCACACACCACCAGTCAATCGAGTTTTGGACG 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TAATACACGCACCTAGCGTCCAGTTTCAGCACACACCACCAGTCAATCGAGTTTTGGACG 1314
Query 1334 AGCCGGAAGATGACATGGAGACAA-GACCAAAACCTCGCATCTGGAGTGGAACTGCGACT 1392
|||||||||| ||||||||| ||| ||||||| |||||||| ||||||||||||| ||||
Sbjct 1315 AGCCGGAAGAAGACATGGAG-CAAAGACCAAAGCCTCGCATTTGGAGTGGAACTGTGACT 1373
Query 1393 TATGAATCAGACAGTGACGATGATGATAAACCTCTTCATGGTTACTCATGTCGTGGTGGC 1452
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1374 TATGAATCAGACAGTGACGATGATGATAAACCTCTTCATGGTTACTCAGGTCGTGGTGGC 1433
Query 1453 GCAACTACGGACAGGGACTCTACCGGTGAAGATGAAATGGATGACGATAACCCAGAGCCA 1512
|||| || ||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1434 GCAATTATGGACAGGGACTCTACAGGTGAAGATGAAATGGAAGACGATAACCCAGAGCCA 1493
Query 1513 GACGTGAATCCTCCATCGTCTTAAACCAGCTTGATGGTTTGGTGTCTCTTTTGCCATATG 1572
||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1494 GACGTGAATCCCCCATCGTCTTAAACCAGCTTGATGGTT-GGTGGGTCTTTTGCCATATG 1552
Query 1573 ATAATGTCGGCAGATTTAAGAAACAAGTTAGGGGAATGAATGATTCTTTGATGTTTTTTC 1632
|||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||
Sbjct 1553 GTAATGTCGGCAGATTTAAGACACAAGTTAGGGGAATGA-TGATTCTTTCATGTTTTTTC 1611
Query 1633 AGCAACCTTTTGAGTTCTGTGAAAACGCTGCATTGATTAGAACAGTGACAACTGACTAGT 1692
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1612 AGCAACCTTTTGAGTTCTGTGAAAACGCTGCATTGATTAGAACGGTGACAACTGACAAGT 1671
Query 1693 ATTTTGGCCCAAGTTAGAAAATCAGAATATGTGAAAAATGCAAAGAAACTTTTT 1746
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1672 ATTTTGGCTCAAGTTAGAAAATCAGAAGATGTGAAAAATGCAAAGAAACTTTTT 1725
> Ahg897670 jgi|Araly1|897670|Al_scaffold_0005_1636
Length=1212
Score = 307 bits (166), Expect = 2e-82
Identities = 511/671 (76%), Gaps = 50/671 (7%)
Strand=Plus/Plus
Query 461 TCTTCGACGGACTTTTTGATTTTTGCCGTGCTTCCGCCGGAGGTTCTATT-GGTGCTGCC 519
||||| |||| || || |||| |||||| || || || || |||||| || | || |||
Sbjct 326 TCTTCAACGGCCTCTTCGATTATTGCCGCGCCTCTGCTGGTGGTTCT-TTAAGCGCCGCC 384
Query 520 GTCAAATTAAACAGACAGGACGCTGATATCGCTATCAATTGGGGCGGTGGGCTTCACCAT 579
|||||||| ||| | | ||| || ||||| ||||||||||||| ||||||| | |||| |
Sbjct 385 GTCAAATTGAACCGTCGGGAAGCCGATATTGCTATCAATTGGGCCGGTGGGATGCACCGT 444
Query 580 GCTAAG-AAAAGCGAGGCTTCTGGGTTTTGCTAT-GTAAACGACATCGTGCTAGGGATT- 636
|| ||| | || |||||||| ||| ||| | || || ||| | ||||| | ||||
Sbjct 445 GCCAAGCGTGATCG-TGCTTCTGGCTTTAGCT-TCGTCAATGACGTTGTGCTTGCGATTG 502
Query 637 CTGGAGTTGCTCAAGATGTTT-AAGCGGGTTCTCTACATAGATATT-GATGTCCACCATG 694
| |||||||||||| | ||| ||||| |||||||||||||||||| | | ||| ||||
Sbjct 503 C-CGAGTTGCTCAAGGT-TTTCAAGCGAGTTCTCTACATAGATATTGGCT-TCCGTCATG 559
Query 695 GAGATGGAGTGGAAGAAGCGTTTTACACCACTGATAGAGTTATGACTGTTTCTTTCCACA 754
| |||| |||||||||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 560 GGGATGCAGTGGAAGAAGCATTTTACAATACGGATAGAGTTATGACTGTTTCTTTCCACA 619
Query 755 AATTTGGGGACTTTTTCCCAGGAACTGGTCACATAAGAGATGTTGGCGCTGAAAAAGGGA 814
|| | |||| | | || || || | |||| | | | ||| ||||
Sbjct 620 CATATACGGACA----CAC-----CTT-TCCCA-A-GAGACGGAGACA--GAA---GGGA 662
Query 815 AATACTATGCTCTAAATGTTCCACTAAACGA-TGGTATGGACGATGAAAGT-TTCCGCAG 872
| ||| ||||||| | ||| |||| || ||| | | ||| ||||| ||| |||
Sbjct 663 GTTG-TATTCTCTAAAAGCACCATTAAA-GAATGGGCTCAAAGATAAAAGTCTTC-GCAA 719
Query 873 CTTGTTTAGACCTCTTATCCAGAAGGTTATGGAAGTGTATCAGCCAGAGGCAGTTGTTCT 932
|||||| |||||| ||||| | |||| ||| |||| ||||||||||| | ||||||||
Sbjct 720 CTTGTTCAGACCTGTTATCAACAAGGCAATGCAAGTTTATCAGCCAGAAGTTGTTGTTCT 779
Query 933 TCAGTGTGGTGCTGACTCCTTAAG-TGGTGATCGGTTGGGTTGC-TTCAACTT-ATCAGT 989
||||||||||||||| || ||| | ||||||| || | | |||||||| | |||
Sbjct 780 TCAGTGTGGTGCTGATTCATTA-GCTGGTGAT---TT---TA-CATTCAACTTGAA-AGT 830
Query 990 CAAGGGTCACGCTGATTGCCTTCG-GTTCTTAAGATCTTACAACGTTCCTCTCATGGTGT 1048
||||||||||| || ||| || || || | ||||||||| || |||||||||||||| |
Sbjct 831 CAAGGGTCACGGTGCTTGTCT-CGAGTACATAAGATCTTTTAATGTTCCTCTCATGGTCT 889
Query 1049 TGGGTGGTGGAGGGTATACTATTCGAAATGTTGCCCGTTGCTGGTGTTATGAGACTGC-A 1107
|||||||||| || | |||| ||||| ||||||| ||||||||||| |||||||| || |
Sbjct 890 TGGGTGGTGGTGGTTCTACTTTTCGACATGTTGCTCGTTGCTGGTGCTATGAGACAGCGA 949
Query 1108 GTTGCTGTTGG 1118
||||||||||
Sbjct 950 -TTGCTGTTGG 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65515221400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5