BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63135.1
Length=613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496497 jgi|Araly1|496497|fgenesh2_kg.8__2313__AT5G63135.1 525 1e-148
> Ahg496497 jgi|Araly1|496497|fgenesh2_kg.8__2313__AT5G63135.1
Length=516
Score = 525 bits (284), Expect = 1e-148
Identities = 300/308 (97%), Gaps = 0/308 (0%)
Strand=Plus/Plus
Query 34 AGAAGAATGTTACAGTTTCCGACGTTGATGACCCAATTTCCGTCGTCGACGAAGACGATT 93
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 AGAAGAATGTTACAGTTTCCGACGTTGATGATCCAATTTCCGTCGTCGACGAAGACGATT 60
Query 94 CCGGCATCGTATTTGCTTCCGTTACAATGGCCTCAGCCGCAGAACGAGGAGATTCTTCTC 153
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGGCATCGTATTTGCTTCCTTTACAATGGCCTCAGCCGCAGAACGAGGAGATTCTTCTC 120
Query 154 GCCATGGAAGAAGCTGAGTTCGAAGAAAAGTGCAACGAGATCAGAAAGATGAGTCCTGCT 213
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCATGGAAGAAGCCGAGTTCGAAGAAAAGTGCAACGAGATCAGAAAGATGAGTCCTGCT 180
Query 214 TTACCGGTAATTGGAAAACCAGTCGTCAACAACGAACAAGAAGAGGATGATAATGAAGCA 273
|| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct 181 TTGCCGGTAATTGGAAAACCAGTCGTCGACAACCAACAAGAAGAGGACGATAATGAAGCA 240
Query 274 GAGGATGATGATGCAGATAATGCAGAGGAATCAGATGGTGAAGAGTTTGAGCAAGAAACC 333
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGGATGATGATGCAGACAATGCAGAGGAATCAGATGGTGAAGAGTTTGAGCAAGAAACC 300
Query 334 GGATAAAT 341
||||||||
Sbjct 301 GGATAAAT 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22416275196
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5