BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63140.1
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951115 jgi|Araly1|951115|scaffold_803002.1 1799 0.0
> Ahg951115 jgi|Araly1|951115|scaffold_803002.1
Length=1195
Score = 1799 bits (974), Expect = 0.0
Identities = 1125/1195 (94%), Gaps = 21/1195 (2%)
Strand=Plus/Plus
Query 117 CAATGGCGGACAATCGAAGAAGAAGAAGCCTATTCGACTTCCTACTTTTCTCCGTGTTTC 176
|||||||||||||||||||||||||||||| | | || | ||||| ||||||||||
Sbjct 19 CAATGGCGGACAATCGAAGAAGAAGAAGCC---T--A-TT-C--CTTTTATCCGTGTTTC 69
Query 177 TAGGACTCGCATGTCTCTGTTTATCTCCGATTCCGGCAACAGCTCAACGTCGGAAACTCA 236
| | ||||||||||||||| ||||| ||||||| || ||||||||| ||||||| |
Sbjct 70 T--G----GCATGTCTCTGTTTAGCTCCGGTTCCGGCGACGGCTCAACGTTGGAAACTAA 123
Query 237 GGTTCAGTGTTAACGGCGAGTTCAAGATACTACAAGTGGCGGATATGCATTTTGCTAACG 296
||||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 124 GGTTCGGTGTGAACGGCGAGTTCAAGTTACTACAAGTCGCGGATATGCATTTTGCTAACG 183
Query 297 GCGCTAAGACGCAGTGTCAAAATGTTCTTCCTAGCCAGAGAGCTCATTGCTCAGACCTCA 356
||| || ||||| ||||||||||||||| |||||||||| |||||| ||||| |||||||
Sbjct 184 GCGTTACGACGCGGTGTCAAAATGTTCTGCCTAGCCAGAAAGCTCACTGCTCCGACCTCA 243
Query 357 ACACCACCATCTTCATGTCGCGAGTCATCGCCGCCGAGAAGCCTGATCTTATCGTCTTCA 416
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 244 ACACCACCATCTTCATGTCCCGAGTCATCGCCGCCGAGAAGCCTGATCTCATCGTCTTCA 303
Query 417 CCGGTGATAACATATTTGGGTTTGATGTAAAAGACGCTTTGAAATC-CATAAACGCTGCG 475
| |||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||
Sbjct 304 CTGGTGATAACATATTTGGGTTTGATGTTAAAGACGCTGTGAAATCTC-TAAACGCTGCG 362
Query 476 TTTGCTCCAGCGATTGCGTCTAAAATCCCATGGGTTGCTATTTTGGGAAACCATGACCAA 535
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 363 TTTGCTCCGGCGATTGCGTCTAAAATCCCATGGGTTGCTATTTTGGGAAACCATGATCAA 422
Query 536 GAATCTACATTTACAAGACAACAAGTTATGAATCACATTGTGAAGCTTCCCAACACTTTG 595
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 423 GAATCTACATTTACACGACAACAAGTCATGAATCACATTGTGAAGCTTCCCAACACTTTG 482
Query 596 TCTCAAGTGAATCCTCCTGAAGCTGCTCATTACATTGATGGTTTTGGTAATTACAATCTC 655
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 483 TCTCAAGTGAATCCTCCTGAAGCTGCTCATTACATTGATGGGTTTGGAAATTACAATCTC 542
Query 656 CAAATCCATGGAGCTGCTGATTCGAAACTACAGAACAAATCTGTTCTTAATCTTTATTTT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CAAATCCATGGAGCTGCTGATTCGAAACTACAGAACAAATCTGTTCTTAATCTTTATTTT 602
Query 716 CTCGATAGTGGAGATTATTCTAGTGTTCCTTACATGGAAGGTTATGATTGGATCAAAACT 775
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 CTCGATAGTGGAGATTACTCTAGTGTTCCTTACATGGAAGGTTATGATTGGATCAAAACT 662
Query 776 TCTCAGCAGTTTTGGTTCGACCGCACTTCAAAACGTCT-CAAGAGGGAGTACAACGCAAA 834
|||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 663 TCTCAGCAATTTTGGTTCGACCGTACTTCAAAACGTCTGCA-GAGGGAGTACAACGCAAA 721
Query 835 GCCTAATCCTCAAGAAGGTATAGCTCCAGGACTAGCTTACTTCCACATTCCATTACCGGA 894
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 722 GCCTAATCCTCAAGAAGGTATAGCTCCGGGACTAGCTTACTTCCACATTCCATTACCGGA 781
Query 895 GTTTTTGAGTTTTGACTCAAAGAACGCTACAAAAGGAGTGAGACAAGAAGGTACATCCGC 954
||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 782 GTTTTGGAGTTTCGACTCAAAGAATGCTACAAAAGGAGTGAGACAAGAAGGTACATCCGC 841
Query 955 GGCTTCTACAAACTCGGGTTTCTTCACAACATTGATAGCTAGAGGAGATGTGAAATCTGT 1014
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 842 GGCTTCTACAAACTCGGGTTTCTTCACAACATTGGTAGCTAGAGGAGATGTGAAATCTGT 901
Query 1015 GTTTGTGGGTCACGACCATGTCAACGACTTCTGCGGTGAACTTAAAGGTTTGAATCTATG 1074
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 902 GTTTGTGGGTCACGACCATGTCAACGACTTCTGCGGTGAACTCAAAGGTTTGAATCTATG 961
Query 1075 TTATGGTGGTGGATTTGGGTATCATGCTTATGGTAAAGCTGGATGGGAAAGAAGAGCGAG 1134
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 962 CTATGGTGGTGGATTTGGGTACCATGCTTATGGTAAAGCTGGATGGGCGAGAAGAGCAAG 1021
Query 1135 AGTTGTGGTTGTTGATTTGAATAAGAAGAGAAAAGGAAAGTGGGGAGCTGTGAAATCGAT 1194
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1022 AGTTGTGGTTGTTGATTTGAATAAGAAGAGAAAAGGAAAATGGGGAGATGTGAAATCGAT 1081
Query 1195 TAAGACATGGAAGAGGCTTGATGATAAGCATCTCTCTGTTATTGACTCTCAAGTTCTTTG 1254
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1082 TAAGACATGGAAGAGGCTTGATGATAAGCATCTCTCTGTTATTGATTCTCAAGTTCTTTG 1141
Query 1255 GAACAATTCTGCAAACAAATTAGTTGTTCGTTGATATTGA-TTCCATGTGTTGTT 1308
||| | ||||||||||||||| |||||||||||||||||| ||| ||||||||||
Sbjct 1142 GAAGAGTTCTGCAAACAAATTGGTTGTTCGTTGATATTGAGTTC-ATGTGTTGTT 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55040404025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5