BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63150.1
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496499 jgi|Araly1|496499|fgenesh2_kg.8__2315__AT5G63150.1 929 0.0
> Ahg496499 jgi|Araly1|496499|fgenesh2_kg.8__2315__AT5G63150.1
Length=639
Score = 929 bits (503), Expect = 0.0
Identities = 601/647 (93%), Gaps = 11/647 (2%)
Strand=Plus/Plus
Query 12 GTGTTTGACGAGCTTTTGGTTTCTTAGGGTTTTTGATCTCTGCAATGGCGAATCTAATTC 71
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1 GTGTTTGACGAGATTTTGGTTTCTTAGGG-TTTTGATCTCTGCAATGGCGAATCTAATGC 59
Query 72 CTAGATTCCTC-AG--GAACAAGTCTTGCTTCAATTCAATCCAAAGGCTTACTACTACTC 128
||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATAGATTCTTCAAGAACAACAAGTCTTGCTTCAATTCAATCCAAAGGCTTACTACTACTC 119
Query 129 CTTCTCTCTTCACTTACCAGAAGCCCTACTTcaacaacaacaacaacaTCGACTCTGTTA 188
| ||||||||||| ||||||||| || ||||| |||||||||||||||||| ||| |||
Sbjct 120 CGTCTCTCTTCACATACCAGAAG-CC--CTTCATCAACAACAACAACATCGAATCTATTA 176
Query 189 TTGAGAAACCCGATCCAGTTTCTTTTACTAATCCTTTGATTACACTCTCCGGGAATGAAT 248
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 177 TTCAGAAACCCGATCCAGTTTCTTTTGCTAATCCTTTGATTACACTCTCCGGGAATGAAT 236
Query 249 CCAATCAACCTATGCGGTTTTACCCTAGTTTCTCCATGGGGTTATGCTTGAATCCCAAAA 308
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 237 TCAATCAACCTATGCAGTTTTACCCTAGTTTCTCCATGGGTTTATGCTTGAATCCCAAAA 296
Query 309 TGATTCAAGGTCTGGATCTAGCTGAAACAGCGTCGTTGGAGGAGGAGGAAGAGGATACGA 368
||||||||||||||||||||||||||||| |||| || || ||||||||||||| |||
Sbjct 297 TGATTCAAGGTCTGGATCTAGCTGAAACAACGTC-TT--TGGTGGAGGAAGAGGATGCGA 353
Query 369 AGGAGATTGTGATTTACGCTGATAGTGTgaagaagaagaggaagaagaagaTGAACAAGC 428
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 AGGAGATCGTGATTTACGCTGATAGTGTGAAGAAGAAGAGGAAGAAGAAGATGAACAAGC 413
Query 429 ACAAGTATAGGAAACTCAGGAAACAGCTTGGTCGCAAGTCATAGAttttttttACTATTC 488
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 414 ACAAGTATAGGAAACTCAGGAAACAGCTTGGTCGCAAGTCGTAGATTTTTTTGACTATTC 473
Query 489 CGGTGAGAAGTTTGCTCCTTTCATGTCTTCTGAATTACTGGGATTCAAAGGATGAACCTT 548
||||||||||||||||||||| || |||||||||| |||| |||||||||||||||||||
Sbjct 474 CGGTGAGAAGTTTGCTCCTTTTATTTCTTCTGAATGACTGAGATTCAAAGGATGAACCTT 533
Query 549 TTTTATTGAATCAGAACAAAAAATTTCTAAATTCCATTGCATTGTCATTAGTCTGTGTTC 608
||| |||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 534 TTTC-TTGAATTAGAACAAAAAGTTTCTATATTCCATTGAATTGTCATTAGTCTGTGTTC 592
Query 609 ATCGTTTGTCTTGACAACACATTTCTAATAAAACGTTTGCTCAATTC 655
||||||||| ||| |||||||||||||||||||| ||||| ||||||
Sbjct 593 ATCGTTTGTTTTGCCAACACATTTCTAATAAAACTTTTGCGCAATTC 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24055560627
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5