BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63160.1
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951117 jgi|Araly1|951117|scaffold_803004.1 1788 0.0
> Ahg951117 jgi|Araly1|951117|scaffold_803004.1
Length=1138
Score = 1788 bits (968), Expect = 0.0
Identities = 1084/1141 (95%), Gaps = 4/1141 (0%)
Strand=Plus/Plus
Query 65 ttctctctGAAAACTTAAAACGATGGCTATAACCGCCACTCAAAACGACGGCGTTTCACT 124
||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TTCTCTCTG-AAA-TTTAAACGATGGCTATAACCGCCACTCAAAACGACGGCGTTTCTCT 58
Query 125 AAACGCCAATAAGATTTCGTATGATCTTGTGGAAACTGATGTTGAGATCATCACCTCCGG 184
|| |||| ||||| |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 59 AATCGCCGATAAGTTTTCATATGATCTTGTGGAAACTGATGTTGAGATCATCACATCCGG 118
Query 185 TCGTCGTAGTATTCCGGCACACTCCGGCATCCTCGCTTCGGTCTCACCGGTACTGACGAA 244
||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 119 TCGCCGTCGTATTCCGGCACACTCCGGCATCCTCGCTTCGGGCTCACCGGTACTGACAAA 178
Query 245 CATCATCGAGAAGCCGAGGAAGATTCACGGCGGATCATCGAAGAAAGTTATTAAGATTCT 304
||||||||||||||||||||| || |||||| |||||||||||| |||||||||||||||
Sbjct 179 CATCATCGAGAAGCCGAGGAAAATCCACGGCCGATCATCGAAGAGAGTTATTAAGATTCT 238
Query 305 CGGTGTTCCATGCGACGCCGTTTCAGTCTTCGTCAGATTCCTCTATTCTCCGAGTGTCAC 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 CGGTGTTCCATGCGACGCCGTTTCAGTCTTCGTCAGATTCCTCTATTCTCCGAGTCTCAC 298
Query 365 GGAGAATGAGATGGAAAAATACGGAATCCATCTACTGGCTTTATCACACGTGTATATGGT 424
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 GGAGAAAGAGATGGAAAAATACGGAATCCATCTACTAGCTTTATCACACGTGTATATGGT 358
Query 425 GACTCAGTTAAAGCAACGGTGCACTAAAGGCGTCGGTGAGAGAGTAACCGCCGAAAACGT 484
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 359 GACTCAGTTAAAGCAACGGTGCACAAAAGGCGTCGGTGAGAGAGTAACCGCCGAAAACGT 418
Query 485 TGTCGATATTCTCCAGCTGGCTCGTCTCTGCGACGCACCTGACCTCTGTCTCAAGTGTAT 544
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGTCGATGTTCTCCAGCTGGCTCGTCTCTGCGACGCACCTGACCTCTGTCTCAAGTGTAT 478
Query 545 GCGATTCATTCACTACAAGTTCAAGACCGTTGAACAGACAGAAGGATGGAAGTTTCTTCA 604
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 479 GCGTTTCATTCATTACAAGTTCAAGACCGTTGAACAGACCGAAGGATGGAAGTTTCTTCA 538
Query 605 AGAACACGATCCTTTTCTTGAACTTGACATTCTCCAATTCATCGACGATGCAGAATCGAG 664
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 539 AGAACACGATCCTTTTCTTGAACTTGACATTCTCCAATTCATCGACGAGGCTGAATCGAG 598
Query 665 GAAGAAAAGAAGAAGGAGACACAGACGAGAACAGAATCTGTATTTGCAGCTGAGTGAAGC 724
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||
Sbjct 599 GAAGAAAAGAAGAAGGAGACACAGACGAGAACAGAATCTGTATATGCAATTGAGTGAGGC 658
Query 725 CATGGAATGTATAGAACACATATGCACCGAAGGTTGCACACTGGTCGGACCATCGTCTAA 784
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 CATGGAATGCATCGAACACATATGCACCGAAGGTTGCACACTGGTCGGACCTTCGTCTAA 718
Query 785 CTTAGACAACAAGTCAACATGTCAAGCAAAACCCGGTCCATGCAGTGCGTTTTCGACTTG 844
||||||| |||||||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 719 CTTAGACGACAAGTCAACATCTCAAGTAAAAACCGGTCCATGCAGTGCGTTTTCGACTTG 778
Query 845 TTACGGACTTCAACTTCTTATACGTCACTTTGCAGTATGCAAGAAAAGAGTCGATGGCAA 904
||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 779 TTACGGACTCCAACTTCTGATACGTCACTTTGCGGTATGCAAGAAACGAGTCGATGGCAA 838
Query 905 AGGTTGTGTCCGATGCAAGAGAATGATTCAACTCCTTAGACTCCATTCTTCGATTTGTGA 964
|||||||||||| |||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 839 AGGTTGTGTCCGTTGCAAGAGAATGATTCAACTTCTTAGACTCCATTCTTCGATCTGCGA 898
Query 965 CCAATCTGAATCTTGCCGTGTCCCTCTTTGCAGGCAATATAAGAATAGAGGTGAAAAGGA 1024
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 899 CCAATCTGAATCTTGCCGTGTCCCCCTTTGCAGGCAATATAAGAATAGAGGCGAAAAGGA 958
Query 1025 CAAGAAAATGGTTGAGGACACGAAGTGGAAGGTTCTGGTGAGAAGAGTAGCGTCTGCTAA 1084
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 959 CAAGAAAATGGTTGAGGACACAAAGTGGAAGGTTCTGGTGAGAAGAGTTGCGTCTGCTAA 1018
Query 1085 AGCCATGTCTTCGTTGTCTCAATCAAAGAAGaaaaaaaGTGAAGTGTTATTTAAAGAAGA 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGCCATGTCTTCGTTGTCTCAATCAAAGAAGAAAAAAAGTGAAGTGTTATTTAAAGAAGA 1078
Query 1145 AGCAGAAGATTTGATCAGAATCCGGAACAAGTTAATG-TGAATATACAATATATGTGTTT 1203
|||||||||||| ||||||||||||||||| |||| | ||||||| ||| ||||||||||
Sbjct 1079 AGCAGAAGATTTCATCAGAATCCGGAACAAATTAA-GATGAATATTCAAAATATGTGTTT 1137
Query 1204 T 1204
|
Sbjct 1138 T 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52564538100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5