BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63170.1
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332543 jgi|Araly1|332543|fgenesh1_pm.C_scaffold_8001886 1559 0.0
> Ahg332543 jgi|Araly1|332543|fgenesh1_pm.C_scaffold_8001886
Length=1020
Score = 1559 bits (844), Expect = 0.0
Identities = 963/1021 (94%), Gaps = 5/1021 (0%)
Strand=Plus/Plus
Query 1 ATGAATTCTCTAGTTATTCAAACCACAATAG---TATTAGTCTCTGTTATATCAGTTTCT 57
||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||||
Sbjct 1 ATGAATTCTCTAGCTATTCAAACTACAATAGTACTATTAGTTTCTGTTATATCAGTTTCC 60
Query 58 ATCGTTCATGCCGGAAATATTCCCGCGGTTATAGCGTTCGGAGATTCAATTCTCGATACA 117
||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 61 ATCGTTCGTGCTGGAAATATTCCCGCGGTTATAGCGTTCGGAGATTCGATACTCGATACC 120
Query 118 GGCAACAACAATTATCTCATGACTCTAACTAAGGTTAATTTCTATCCCTATGGAAGAGAT 177
|| |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 121 GGAAACAACAATTATCTTATGACTCTTACTAAGGTTAACTTCTATCCGTATGGAAGAGAT 180
Query 178 TTTGTAACTCGAAGAGCCACAGGAAGATTTGGCAATGGAAGAATTCCTACAGATTTGATT 237
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTGTAACTCAAAGAGCCACAGGAAGATTTGGCAATGGAAGAATTCCTACAGATTTGATT 240
Query 238 GCCGAAGGTTTGGGAATAAAGAATATTGTACCAGCTTATCGTAGTCCATTCCTTGAACCC 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 GCCGAAGGTTTGGGAATAAAGAATATTGTACCAGCTTATCGTAGTCCATTCCTTCAACCC 300
Query 298 AATGATATCTTAACCGGTGTTAGTTTTGCTTCTGGTGGTTCCGGTTTAGATCCAATGACC 357
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 AATGATATCCTAACCGGTGTTAGTTTTGCTTCTGGTGGTTCCGGTTTAGATCCTATGACC 360
Query 358 GCCAGAATTCAGGGAGTTATTTGGGTACCAGACCAGTTAAATGACTTCAAAGCTTACATA 417
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GCCAGAATTCAGGGAGTTATTTGGGTACCAGACCAGTTAAACGACTTCAAAGCTTACATA 420
Query 418 GCAAAGCTGAATAGCATCACAGGAGACGAAGAGAAAACAAGATCAATCATATCGAATGCA 477
|||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GCAAAGCTAAACAGCATTACAGGAGATGAAGAGAAAACAAGATCAATCATATCGAATGCA 480
Query 478 GTTTTTGTCATTTCCGCTGGGAATAACGATATTGCCATCACATATTTCACAAATCC-GAT 536
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 481 GTTTTTGTCATTTCCGCTGGAAATAACGATATTGCCATCACATATTTCACAAATCCAGC- 539
Query 537 AAGAAACACTCGATACACTATCTTTTCATACACTGACTTGATGGTTTCATGGACTCAATC 596
|||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 540 AAGAAACACTCGATACACTATCTTCTCATACACGGACATGATGGTTTCATGGACTCAATC 599
Query 597 ATTCATAAAGGAATTATATAATTTGGGAGCAAGAAAATTCGCGATTATGGGAACATTACC 656
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 ATTCATAAAGGAATTATATAATTTGGGAGCGAGAAAATTCGCGATTATGGGAACATTACC 659
Query 657 ATTGGGTTGCTTGCCGGGAGCAAGCAATGCTCTTGGAGGTTTATGTCTAGAACCCGCAAA 716
|||||||||||| || ||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 660 ATTGGGTTGCTTACCAGGAGCAAGCAACGCTCTTGGAGGGTTATGTCTAGAACCTGCAAA 719
Query 717 CGCAGTGGCTAGACTCTTTAATAGGAAGTTAGCGGATGAAGTCAACAACCTCAACTCGAT 776
| |||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||
Sbjct 720 TGTAGTGGCTAGACTCTTTAACCGGAAGCTAGCGAACGAAGTCAACAACCTCAACTCGAT 779
Query 777 GCTCCCAGGTTCTCGTTCGATATACGTCGACATGTATAATCCTCTCCTCGAACTTGTCAA 836
||| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 780 GCTGTCAGGTTCTCGTTCGATATACGTCGACATGTATAATCCTCTTCTTGAACTCGTCAA 839
Query 837 AAACCCTCTAAGATCAGGATTTATCTCGCCAACTAGACCTTGTTGTTGTGCTCCGGCGGC 896
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 AAATCCTCTAAGATCAGGATTTACCTCGCCAACTAGACCTTGTTGTTGTGCTCCGGCGGC 899
Query 897 TCCCATACCGTGCTTGGATGCGTCTCGTTATGTGTTTTGGGACATTGCACATCCATCGGA 956
||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 900 TCCGATACCGTGCTTGGATGCGTCTCGTTATGTCTTTTGGGACATTGGACATCCATCGGA 959
Query 957 GAAAGCTTATCAGACAATTATTCCTCCGATTATCCAACAAATTCAACAAAGCTTCGCTTG 1016
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 960 GAAAGCTTATCAGACTATTATTCCTCCGATTATCCAACAAATCCAACAAAGCTTCGCTTG 1019
Query 1017 A 1017
|
Sbjct 1020 A 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5