BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63190.1
Length=2603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496503 jgi|Araly1|496503|fgenesh2_kg.8__2319__AT5G63190.2 3735 0.0
> Ahg496503 jgi|Araly1|496503|fgenesh2_kg.8__2319__AT5G63190.2
Length=2501
Score = 3735 bits (2022), Expect = 0.0
Identities = 2306/2440 (95%), Gaps = 32/2440 (1%)
Strand=Plus/Plus
Query 141 GTTTTTCTCCGGTGCTGGAGATCCGATTCCTTATCTTTTCTGTCTTGGCTCGAGATCCGA 200
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 79 GTTTTT-TCCGGTGCTGGAGATCCGATTCCTTATCTTTCCTGTCTTGGCTCGAGATCCGA 137
Query 201 GCCAAGCAGTAAAGAAGACGACTTTGTTTCACGATTTGGAATTTG-ATTCCTGCGATCAC 259
||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct 138 GCCAAGCAGTAAAGAAGACGACTTTGTTTCACGATTTGGAA-TTGTATTCTTGCGATCAC 196
Query 260 ----A-GATGGCATCGGGTGAGGGAATTTTGACGGATGGACAGTGGAAAAAGCTTGAAAT 314
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 197 AGGTATGATGGCATCGGGTGAGGGAATTTTGACTGATGGACAGTGGAAAAAGCTTGAAAT 256
Query 315 AGCAACTCATAATTCTGGAAGTTTGTCATCATCGCCTAAATCTCATACTCTCTTTGCTGA 374
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 257 AGCAACTCAGAATTCTGGAAGTTTGTCATCATCGCCCAAATCTCATACTCTGTTTGCTGA 316
Query 375 TCTGAACATTAAGTCTCCCACTGGTGGCAAAGGACCAGTTGCTGGGATTCCTAATAGGCA 434
| ||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct 317 TTTGAACATTAAGTCTCCCACTGGTGGCAAAGGACCAGTAGCTGGGTTTCCAAATAGGCA 376
Query 435 TGTGCGACGTACTCACTCAGGGAAGCATATTCGTGTTAAGAAGGAGGGTGCTGGTGGCAA 494
||| ||||| ||||| || ||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct 377 TGTACGACGGACTCATTCTGGGAAGCATATCCGTGTAAAGAAGGATGGTGCTGGTGGAAA 436
Query 495 AGGAACTTGGGGAAAGCTTCTTGACACTGATGATGGTGACTCCTGTATTGATAAGAATGA 554
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 437 AGGAACTTGGGGAAAGCTTCTTGACACTGATGAGGGTGACTCCTGTATTGACAAGAATGA 496
Query 555 TCCCAATTACGATAGTGGAGAGGACGCATATGATGGACTTGTTGATTCACCGGTATCAGA 614
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 497 TCCCAATTACGATAGCGGAGAGGACGCATATGATGGACTTGTTGATTCACCTGTATCAGA 556
Query 615 CCCGTTGAATGATTACAAAAAGTCAGTAGTTTCCATCATTGACGAATACTTTAGCACCGG 674
||||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 557 CCCGTTGGATGATTACAAAAAGGCTGTAGTTTCCATCATTGAGGAATACTTTAGCACCGG 616
Query 675 GGATGTGAAAGTGGCGGCATCTGACCTCAGGGAACTTGGTTCAAGCGAATATCATCCTTA 734
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 617 GGATGTGAAAGTGGCGGCATCTGACCTCAGGGAACTTGGTTCAAGTGAATATCATCCTTA 676
Query 735 CTTCACCAAGCGACTTGTTTCTATGGCCATGGACAGACACGATAAGGAGAAGGAAATGGC 794
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 677 CTTCACCAAGCGACTTGTTTCTATGGCTATGGACAGGCACGATAAGGAGAAGGAAATGGC 736
Query 795 TTCAGTGCTACTCTCTGCATTGTATGCTGATGTTATTTTACCTGATCAAATTAGGGATGG 854
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 737 TTCGGTGCTACTCTCTGCATTGTATGCGGATGTCATTTTACCTGATCAAATTAGGGATGG 796
Query 855 ATTTATAAGACTTCTCAGATCTGTTGATGACCTTGCGGTGGACATCCTTGATGCTGTTAA 914
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 797 ATTTATTAGACTTCTCAGATCTGTTGATGACCTTGCTGTGGACATCCTTGATGCTGTTAA 856
Query 915 TGTCCTTGCATTGTTTATTGCACGGGCCATCGTTGACGAAATTCTCCCTCCGGTTTTTCT 974
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 857 TGTCCTTGCATTGTTTATTGCACGGGCCATCGTTGACGAAATTCTCCCCCCGATTTTCCT 916
Query 975 GGTTAGATCTAAGAAGATTCTTCCAGAATCTTGCAAAGGGTTTCAGGTTATTGTAACTGC 1034
|| ||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 917 GGCTAGATCTAAGAAGATACTTCCAGAATCTTCCAAAGGGTTTCAGGTAATTGTAACTGC 976
Query 1035 AGAAAAGAGCTATCTCTCAGCTCCTCACCATGCAGAACTAGTGGAGAAGAAATGGGGAGG 1094
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 977 AGAAAAGAGCTATCTCTCAGCTCCTCACCATGCAGAATTAGTGGAGAAGAAATGGGGAGG 1036
Query 1095 TAGTACTCACACTACAGTAGAAGAAACGAAGAAAAAGATATCTGAAATCTTGAAGGAATA 1154
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1037 TAGCACTCACACTACAGTAGAAGAAACAAAGAAAAAGATATCTGAAATCTTGAAGGAATA 1096
Query 1155 CGTGGAAAACGGAGACACTTACGAAGCTTGTAGATGCATCAGGGAATTAGGTGTCTCGTT 1214
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 TGTGGAAAACGGAGACACTTACGAAGCTTGTAGATGCATCAGGGAATTAGGTGTCTCGTT 1156
Query 1215 TTTCCATCATGAGGTTGTGAAGAGGGCTTTGGTTCTGGCGATGGATTCTCCAACCGCTGA 1274
||||||||| ||||| ||||||||||||||||||||||| ||||| |||| |||| ||||
Sbjct 1157 TTTCCATCACGAGGTCGTGAAGAGGGCTTTGGTTCTGGCTATGGAATCTCAAACCTCTGA 1216
Query 1275 GTCACTTGTACTAAAGCTGTTGAAGGAAACTGCTGAAGAAGGACTGATCAGTTCGAGTCA 1334
| ||||| |||||||| ||||||| ||| ||||||||||||| ||||||||||| |||||
Sbjct 1217 GCCACTTATACTAAAGTTGTTGAACGAAGCTGCTGAAGAAGGTCTGATCAGTTCAAGTCA 1276
Query 1335 AATGGTGAAGGGATTCTTCCGAGTAGCAGAGAGTCTCGATGACCTTGCTCTAGATATCCC 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 AATGGTGAAGGGATTCTTCCGAGTAGCAGAGAGTCTCGATGACCTTGCTCTAGATATCCC 1336
Query 1395 ATCTGCCAAAAAGCTGTTTGATTCGATAGTTCCAAAGGCTATTTCTGGAGGCTGGCTCGA 1454
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1337 ATCGGCCAAAAAGCTGTTTGATTCGATAGTTCCAAAGGCTATCTCTGGAGGCTGGCTCGA 1396
Query 1455 TGATTCATTTAAGATAACCTCTGATCAAGATGGAGAAAAATCGAGTCAAGACGGAAAGCT 1514
||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1397 TGATTCATTTAAGGTTACCTCTGATCAAGATGGAGGGAAATCGAGTCAAGACGGAAAGCT 1456
Query 1515 AAGACAGTACAAGAAGGATACAGTGAACATAATTCAGGAATATTTCTTATCAGATGACAT 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 AAGACAGTACAAGAAGGATACAGTGAACATAATTCAGGAATATTTCTTATCAGATGACAT 1516
Query 1575 TCCTGAGCTAATCCGCAGTCTTCAAGATTTAGGGGCACCTGAATATAACCCGGTGTTTCT 1634
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1517 TCCTGAGCTAATCCGCAGTCTTCAAGATTTAGGGACACCTGAATATAACCCGGTATTTCT 1576
Query 1635 GAAGAGGCTCATAACTCTTGCTCTAGACAGGAAAAACAGAGAAAAGGAAATGGCTTCGGT 1694
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1577 GAAGAGGCTCATAACTCTTGCTCTAGATAGGAAAAACAGAGAAAAGGAAATGGCTTCGGT 1636
Query 1695 TCTTCTTTCTGCTCTTCACATGGAGCTATTCTCAACTGAAGATTTCATAAACGGTTTCAT 1754
||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| |||||
Sbjct 1637 TCTTCTTTCTGCTCTACACATGGAGTTATTCTCAACCGAAGATTTCATAAACGGCTTCAT 1696
Query 1755 TATGCTCCTGGAATCGGCAGAAGACACAGCTTTAGATATCATGGACGCATCAAACGAACT 1814
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1697 TATGCTCCTGGAATCCGCAGAAGACACAGCTTTAGACATCATGGACGCATCAAACGAACT 1756
Query 1815 TGCTCTGTTTTTAGCTAGAGCTGTGATTGACGACGTCTTAGCTCCACTTAACCTTGAAGA 1874
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1757 TGCTCTGTTTTTAGCTAGAGCTGTGATTGACGACGTTTTAGCTCCACTTAACCTTGAAGA 1816
Query 1875 TATCTCAACCAAGCTGCCTCCAAAATCAACCGGAACCGAAACAGTCCGCTCAGCCAGGTC 1934
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 GATCTCAACAAAGCTACCTCCAAAATCAACCGGAACCGAAACAGTCCGCTCAGCCAGGTC 1876
Query 1935 TCTTATCTCCGCCAGACACGCAGGAGAGAGACTCCTAAGAAGCTGGGGAGGTGGAACCGG 1994
||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1877 TCTTATCTCTGCCAGACACGCAGGAGAGAGACTCCTGAGAAGCTGGGGCGGTGGAACAGG 1936
Query 1995 CTGGATAGTGGAAGATGCAAAGGACAAAATCTCGAAACTCCTAGAAGAATACGAAACAGG 2054
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1937 CTGGATAGTGGAAGATGCAAAGGACAAAATCTCGAAACTTTTAGAAGAATACGAAACAGG 1996
Query 2055 AGGAGTAACATCAGAAGCTTGTCAATGTATCCGCGATCTAGGGATGCCTTTTTTCAACCA 2114
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1997 AGGAGTAACATCAGAAGCTTGTCAATGTATCCGCGATCTAGGGATGCCGTTTTTCAACCA 2056
Query 2115 CGAAGTAGTGAAGAAAGCTTTGGTGATGGCAATGGAGAAGCAGAATGATCGGTTACTGAA 2174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 CGAAGTAGTGAAGAAAGCTTTGGTGATGGCAATGGAGAAGCAGAATGATCGGTTACTGAA 2116
Query 2175 TCTGCTTGAGGAGTGTTTTGGTGAAGGATTGATTACAACTAACCAAATGACGAAAGGGTT 2234
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2117 TCTACTTGAGGAGTGTTTTGGTGAAGGGTTGATTACGACTAACCAAATGACGAAAGGGTT 2176
Query 2235 TGGTCGTGTTAACGACAGCCTCGATGACTTGTCGCTTGATATACCGAACGCGAAAGAGAA 2294
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2177 TGGTCGCGTTAAAGACAGCCTCGATGACTTGTCGCTTGATATACCGAACGCGAAAGAGAA 2236
Query 2295 GTTTGAGCTGTATGCTAGTCATGCCATGGACAATGGTTGGATCCTTCCCGAGTTTGGGAT 2354
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2237 GTTTGAGTTGTATGCTAGTCATGCCATGGACAATGGTTGGATCCTTCCTGAGTTTGGGAT 2296
Query 2355 TTCTGCAACTCAGTGATTAGTGGTTCTCTTATCAGTTTCTTGTGTTTGTG----CTTACG 2410
|||||| |||||||||| | || |||||||||||||||||| |||||||| ||||||
Sbjct 2297 TTCTGCGACTCAGTGATGACTGATTCTCTTATCAGTTTCTTATGTTTGTGTAAGCTTACG 2356
Query 2411 ATACTTTCCTCACTATCTACATATATGTATGGATTCAGTTAGTAGATAAACATGAGATGT 2470
|| |||||||||| |||| ||||| || || | | | ||||||||||||||||
Sbjct 2357 ATGGTTTCCTCACTTTCTA--TATAT--AT--AT--A-T--G--GATAAACATGAGATGT 2403
Query 2471 TTATA-TGTTCATGTGTTTCTG-TCTGGTTG-TT-GTGTTTTGTCTTTGTACTGATATCT 2526
||||| | |||||||||||| | ||| ||| || |||||||||||||||||||||||||
Sbjct 2404 TTATAAT-TTCATGTGTTTC-GCTCTTGTTTATTTGTGTTTTGTCTTTGTACTGATATCT 2461
Query 2527 TTTAGTGTGTTCTAATTT-CTGATGGATTTTTGTTACATT 2565
|||||||||||||||||| |||||||||||| ||||||||
Sbjct 2462 TTTAGTGTGTTCTAATTTTCTGATGGATTTTCGTTACATT 2501
Score = 137 bits (74), Expect = 3e-31
Identities = 79/81 (98%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 20 TTTATTGGCGATCCTCATCCATTTCCTCTCTCGTCGTTGTCTGGGAATCGGTGACTTTT- 78
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTT-TTGGCGATCCTCATCCATTTCCTCTCTCGTCGTTGTCTGGGAATCGGTGACTTTTT 59
Query 79 GAATCTTTGCGACTCTCTTGT 99
|||||||||||||||||||||
Sbjct 60 GAATCTTTGCGACTCTCTTGT 80
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98158561365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5