BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63220.1
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496506 jgi|Araly1|496506|fgenesh2_kg.8__2322__AT5G63220.1 2004 0.0
> Ahg496506 jgi|Araly1|496506|fgenesh2_kg.8__2322__AT5G63220.1
Length=1259
Score = 2004 bits (1085), Expect = 0.0
Identities = 1182/1229 (96%), Gaps = 5/1229 (0%)
Strand=Plus/Plus
Query 55 AGATTTGAAGAAGAAAACAACAAATCCTTGAGATCCATGTCGAGAGAGAGGATCAAACGT 114
||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||
Sbjct 32 AGATTTGAAGAAGAAAACATCAAAACCTTGAGATCCATGTCTCGAGAGAGGATCAAACGT 91
Query 115 GAATTACCTCCTGTTCAAGAGCATATTGATAAATTGCGGAAAGTGATAGAGGAAGGCAAT 174
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 92 GAATTACCTCCCGTTCAAGAGCATATTGATAAATTGCGGAAAGTGGTAGAGGAAGGCAAT 151
Query 175 TACTATGGAGCTTTGCAGATGTATAAATCTATCAGTGCAAGATATGTCACCGCTCAAAGA 234
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 152 TACTATGGAGCTTTGCAGATGTATAAATCTATCAGTGCAAGATATGTCACGGCTCAGAGA 211
Query 235 TTCTCTGAAGCTCTTGATATCCTCTTTTCAGGGGCTTGCATTGAACTAGAACACGGCCTG 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 TTCTCTGAAGCTCTTGATATCCTCTTTTCAGGGGCTTGCATTGAACTAGAACACGGCCTG 271
Query 295 GTGAATTGTGGGGCGGACCTAGCTATTTTGTTTGTTGACACACTAGTTAAAGCCAAATCT 354
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 272 GTGAATTGTGGGGCGGACCTCGCTATTTTGTTTGTCGACACACTAGTTAAAGCCAAGTCT 331
Query 355 CCTTGCAACGATGAAACTCTTGATCGTATCAGGTGTATTTTCAAATTGTTTCCTCGGGTT 414
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 CCTTGCAACGATGAAGCTCTTGATCGTATCAGGTGTATTTTCAAATTGTTTCCTCGGGTT 391
Query 415 CCTGTACCACCTCATTTGGTAGATGTGAGTGACGATGAAGATGTTCAAAATCTTCAAGAA 474
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 392 CCTGTACCACCTCATTTGGTAGATGTGAGTGACGATGAAGATGTCCAAAATCTTCAAGAA 451
Query 475 TCTCTTGGGGAAGCCAGATCACGAGTAGAAAACTTGACTTCGTTCTTGAGAGCTGCTATC 534
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 TCTCTTGGGGAGGCCAGATCACGAGTAGAAAACTTGACTTCGTTCTTGAGAGCTGCTATA 511
Query 535 AAATGGTCTGCAGAATTTGGAGGCCCACGTACTGGCTATCCTGAGTTGCATGCTATGCTG 594
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 512 AAATGGTCTGCAGAGTTTGGAGGCCCACCTACTGGCTATCCTGAGTTGCATGCTATGCTG 571
Query 595 GGTGATTATCTCTACACTGAGTGTCCTGAACTTGATATGGTCCGGATATCCCGACATTTT 654
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 GGTGATTATCTCTACACCGAGTGTCCTGAACTTGATATGGTCCGGATATCCCGACATTTT 631
Query 655 GTTAGAGCTGAGGACCCCGAGAAATTTGCATCTATGCTGGTCAACTTTATGGGAAGGTGT 714
||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 632 GTTAGAGCTGAGGACCCTGAGAAGTTTGCATCTATGCTGATCAACTTTATGGGAAGGTGT 691
Query 715 TATCCCGGAGAAGATGACCTCGCAATTGCACGAGCAGTTCTCATGTATTTATCCATGGGT 774
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 692 TATCCCGGAGAAGATGACCTCGCAATCGCACGAGCAGTTCTCATGTACTTATCTATGGGT 751
Query 775 AACATGAAAGATGCAAACTTTATGATGGATGAGATTAAGAAACAAGCAGAGACAAAAAAT 834
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 752 AACATGAAAGATGCAAACTTTATGATGGATGAGATTAAGAAACAAGCGGAGACAAAAAAT 811
Query 835 CCTGAGCTTTCAGAATCGGACCTTATCCAATTTATCTCATATCTTCTGGAAACGTTGCAG 894
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 CCCGAGCTTTCAGAATCAGACCTTATCCAATTTATCTCATATCTTCTGGAAACGTTGCAG 871
Query 895 AGGGATGCATTACCTCTTTTCAATATGTTAAGAGTAAAATATAAGTCAAGCATAGATAGA 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 AGGGATGCATTACCTCTTTTCAATATGTTAAGAGTAAAATATAAGTCAAGCATAGATAGG 931
Query 955 GATCAGCTGCTTAACGAGTTGCTGGACGAGATTGCAGAGAGGTTTTATGGTGTGCAGCGT 1014
|| ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct 932 GACCAGCTGCTTAACGAGTTGCTGGACGAGATTGCAGAGAAGTTTTACGGGGTGCAGCGT 991
Query 1015 AAGAATCCTTTGCAAGGAATGTTTGGAGACATCTTCAAGATGATGGGCTGAGGAAGGAGT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 AAGAATCCTTTGCAAGGAATGTTTGGAGACATCTTCAAGATGATGGGCTGAGGAAGGAGT 1051
Query 1075 TTGAAGAGTGA-GT-T-CtttttttGGTTTTCCTTTCTGATTTGTATTTGGCAACGTACT 1131
||||||| | | | ||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1052 TTGAAGAAACAAGAATACTTTTTTTG-TTTTCCTTTCTGATTTGTATTTGGCAATGTACT 1110
Query 1132 -AATAATGGATAGCTCTGGGGAATTCTCCAGATCATAAGTTATTTCTCTTTTCCTCAAGT 1190
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1111 TAATAATGGATAGCTCTGGAGAATTCTCCAGATCATAAGTTATATCTCTTTTCCTCAAGT 1170
Query 1191 GGGTGAAACAGTTTTGTTCTTTGTAACATTTTACATTTGTTTGTCTTTACTATATTAATT 1250
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 GGGTGAAAGAGTTTTGTTCTTTGTAACATTTTACATTTGTTTGTCTTTACTATATTAATT 1230
Query 1251 CAGGATAGATACAAATTAAACTTCAATTT 1279
||||||| ||| |||||||||||||||||
Sbjct 1231 CAGGATATATAAAAATTAAACTTCAATTT 1259
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1 AGTTTCCGTACTTGGGATAATTTATCAATCT 31
|||||||||||||||||||||||||||||||
Sbjct 1 AGTTTCCGTACTTGGGATAATTTATCAATCT 31
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48111121254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5