BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63225.1
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332548 jgi|Araly1|332548|fgenesh1_pm.C_scaffold_8001891 401 2e-111
Ahg952525 jgi|Araly1|952525|scaffold_83500002.1 326 1e-88
> Ahg332548 jgi|Araly1|332548|fgenesh1_pm.C_scaffold_8001891
Length=537
Score = 401 bits (217), Expect = 2e-111
Identities = 255/273 (93%), Gaps = 4/273 (1%)
Strand=Plus/Plus
Query 120 TAGCAGACAATGGTGCATGGCCATGCCGAATGCCACAGGA-GAACAATTACAAGCTAATA 178
||||||||||||||||||||||||||||| ||| | || | |||||||||||||||||||
Sbjct 267 TAGCAGACAATGGTGCATGGCCATGCCGACTGCAAGAG-ACGAACAATTACAAGCTAATA 325
Query 179 TTGATTATGCTTGTAGCCAGAATGTTGATTGTACACCGATCCAACCAGGTGGAACTTGCT 238
|||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 326 TTGATTTTGCTTGTAGCCAGAATGTTGACTGTACACCGATCCAACCTGGTGGAACTTGCT 385
Query 239 ATGAACCTAACACGTTATT-AGACCATGCGTCGTTTGCCATGAACGCATATTATCAAAGC 297
|||| |||||||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 386 ATGACCCTAACACGTTATTCA-ACCATGCGTCGTTTGCCATGAACGCTTATTATCAAAGC 444
Query 298 CATGGTCGTATCGAAGATGCTTGTAGGTTCGGCCGTACTGGTTGTTTTGTTTTCATCGAC 357
|||||||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 445 CATGGTCGTACCGAAGATGCTTGTAGGTTCGACCGTACCGGTTGTTTTGTTTTTATCGAC 504
Query 358 CCAAGTAATGGTTCATGTATCTACTACACTTAA 390
||||||||||| |||||| ||||||||||||||
Sbjct 505 CCAAGTAATGGCTCATGTGTCTACTACACTTAA 537
> Ahg952525 jgi|Araly1|952525|scaffold_83500002.1
Length=379
Score = 326 bits (176), Expect = 1e-88
Identities = 283/333 (85%), Gaps = 14/333 (4%)
Strand=Plus/Plus
Query 66 GCAGCTTTTAACGCTCT-TTCTTCTTC-TATCTGCTGTTGCGATCCCTGTCGTGACTAGC 123
||| |||||||| || | |||||| || |||| |||| || ||||| ||||||||| ||
Sbjct 33 GCAACTTTTAACACT-TGTTCTTC-TCGTATCAACTGTCGCTATCCCCGTCGTGACTTGC 90
Query 124 AGACAATGGTGCATGGCCATGCC-GAATGCCACAGGA-GAACAATTACAAGCTAATATTG 181
||||||||||||||||| ||||| | | || || || || || |||||||| || ||||
Sbjct 91 AGACAATGGTGCATGGCGATGCCTG-GTACCTCA-GATGAGCAGTTACAAGCCAACATTG 148
Query 182 ATTATGCTTGTAGCCA-GAATGTTGATTGTACACCGATCCAACCAGGTGGAACTTGCTAT 240
||| || ||| ||| | | || |||||||||||||||||||| |||||||||||||||
Sbjct 149 ATTTTGGTTGCAGCAACG-GCGTCGATTGTACACCGATCCAACCTGGTGGAACTTGCTAT 207
Query 241 GAACCTAACACGTTATTAGACCATGCGTCGTTTGCCATGAACGCATATTATCAAAGCCAT 300
| |||||||||||||| ||||||||||||| || ||||||||| |||||||||||||||
Sbjct 208 CACCCTAACACGTTATTCGACCATGCGTCGTATGTCATGAACGCTTATTATCAAAGCCAT 267
Query 301 GGTCGTATCGAAGATGCTTGTAGGTTCGGCCGTACTGGTTGTTTTG-TTTT-CATCGACC 358
|| ||||||||||||||||||||||||||||||||||| |||||| |||| | ||| |
Sbjct 268 GGGCGTATCGAAGATGCTTGTAGGTTCGGCCGTACTGGCTGTTTTACTTTTGC--CGATC 325
Query 359 CAAGTAATGGTTCATGTATCTACTACACTTAAA 391
|||||||||| || |||||||||||||||||||
Sbjct 326 CAAGTAATGGCTCGTGTATCTACTACACTTAAA 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22225660611
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5