BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63230.1
Length=463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952525 jgi|Araly1|952525|scaffold_83500002.1 451 2e-126
Ahg332548 jgi|Araly1|332548|fgenesh1_pm.C_scaffold_8001891 370 5e-102
> Ahg952525 jgi|Araly1|952525|scaffold_83500002.1
Length=379
Score = 451 bits (244), Expect = 2e-126
Identities = 329/370 (89%), Gaps = 6/370 (2%)
Strand=Plus/Plus
Query 1 CTTCACCACTTCCAATGTCGTCGTTGCAACTTTTAACACTTCTTCTTCTCATATCAACTG 60
||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 8 CTTTACCATTTCCAATGTCGTCGTTGCAACTTTTAACACTTGTTCTTCTCGTATCAACTG 67
Query 61 TCTCTATCCCCGTCGTGACTTGCAGACAATGGTGTACGCCAATGCCTAATACCTCAGATG 120
|| ||||||||||||||||||||||||||||||| | | | |||||| |||||||||||
Sbjct 68 TCGCTATCCCCGTCGTGACTTGCAGACAATGGTGCATGGCGATGCCTGGTACCTCAGATG 127
Query 121 AGCAGTTACAAGCCAACATTGATTTTGCTTGCAGCAACGGCGTCGATTGTACACCGATCC 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 128 AGCAGTTACAAGCCAACATTGATTTTGGTTGCAGCAACGGCGTCGATTGTACACCGATCC 187
Query 181 AACCCGGTGGGAA-TTGTTA-CAACCCTAATACTTTATTTGACCATGCATCGTATGTCAT 238
|||| ||||| || ||| || || |||||| || ||||| |||||||| |||||||||||
Sbjct 188 AACCTGGTGG-AACTTGCTATCA-CCCTAACACGTTATTCGACCATGCGTCGTATGTCAT 245
Query 239 GAACGCTTATTATCATAGCCATGGCCGTGTCGAAGATGCGTGTAGGTTCAACCGTAGTGG 298
||||||||||||||| |||||||| ||| |||||||||| ||||||||| ||||| |||
Sbjct 246 GAACGCTTATTATCAAAGCCATGGGCGTATCGAAGATGCTTGTAGGTTCGGCCGTACTGG 305
Query 299 TTGTTTTG-TTGTTGTCGACCCAAGTAAAGACTCATGTGTCTACTATACTTAAATAAAGA 357
|||||| || ||| ||| |||||||| | ||| ||| ||||||| ||||||| |||||
Sbjct 306 CTGTTTTACTT-TTGCCGATCCAAGTAATGGCTCGTGTATCTACTACACTTAAAGAAAGA 364
Query 358 AAACTCTTTG 367
||||||||||
Sbjct 365 AAACTCTTTG 374
> Ahg332548 jgi|Araly1|332548|fgenesh1_pm.C_scaffold_8001891
Length=537
Score = 370 bits (200), Expect = 5e-102
Identities = 247/270 (91%), Gaps = 2/270 (1%)
Strand=Plus/Plus
Query 15 ATGTCGTCGTTGCAACTTTTAACACTTCTTCTTCTCATATCAACTGTCTCTATCCCCGTC 74
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1 ATGTCGTCGTTGCAACTTTTAACACTTCTTCTTCTCGTATCAACTGTCGCTATCCCCGTC 60
Query 75 GTGACTTGCAGACAATGGTGTACGCCAATGCCTAATACCTCAGATGAGCAGTTACAAGCC 134
|||||||||||||||||||| | | | |||||| |||||||||||||||||||||||||
Sbjct 61 GTGACTTGCAGACAATGGTGCATGGCGATGCCTGGTACCTCAGATGAGCAGTTACAAGCC 120
Query 135 AACATTGATTTTGCTTGCAGCAACGGCGTCGATTGTACACCGATCCAACCCGGTGGGAA- 193
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 121 AACATTGATTTTGGTTGCAGCAACGGCGTCGATTGTACACCGATCCAACCTGGTGG-AAC 179
Query 194 TTGTTACAACCCTAATACTTTATTTGACCATGCATCGTATGTCATGAACGCTTATTATCA 253
||| || ||||||| || ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 180 TTGCTATGACCCTAACACGTTATTCGACCATGCGTCGTATGTCATGAACGCTTATTATCA 239
Query 254 TAGCCATGGCCGTGTCGAAGATGCGTGTAG 283
|||||||| ||| |||||||||| |||||
Sbjct 240 AAGCCATGGGCGTATCGAAGATGCTTGTAG 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16750303571
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5