BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63240.1
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497543 jgi|Araly1|497543|fgenesh2_kg.835__1__AT5G63240.1 628 1e-179
Ahg496508 jgi|Araly1|496508|fgenesh2_kg.8__2324__AT5G63240.1 623 5e-178
> Ahg497543 jgi|Araly1|497543|fgenesh2_kg.835__1__AT5G63240.1
Length=461
Score = 628 bits (340), Expect = 1e-179
Identities = 424/463 (92%), Gaps = 12/463 (3%)
Strand=Plus/Plus
Query 124 ATAATGGTCAC-AAAACTGATGTCTCTATCATTGACGCTCAT-CTTCGTCCTCCTCGTAT 181
||||||||||| ||||| ||| |||||| ||||||||||| | |||| ||||||||||||
Sbjct 1 ATAATGGTCACAAAAAC-GATATCTCTACCATTGACGCTC-TACTTCTTCCTCCTCGTAT 58
Query 182 CTACCGTATCCGTGAACTCGACACCAAGAAACCTCTCGCAGGCTGCTGAAAACAAAGGAG 241
| |||||||| |||||| | |||| |||||||||||||| ||| ||||||||||||||||
Sbjct 59 CCACCGTATCTGTGAACGCCACACTAAGAAACCTCTCGCGGGCGGCTGAAAACAAAGGAG 118
Query 242 TATGGTGCATAGCGGGTGACAAAGCGACAGATAAGCAACTGCAAGCGAATATAGATTGGG 301
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 119 TATGGTGCATAGCGAATGACAAAGGGACAGATAAGCAACTACAAGCGAATATAGATTGGG 178
Query 302 TTTGCAGCGACGAAGGAGGATTCCGTGACTGTGGAGCGCTCAATTCCGGTGGACCTTGCT 361
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 179 TTTGCAGCGACGAAGGAGGATTCCGTGACTGTGGAGCGATCAATCCCGGTGGACCTTGCT 238
Query 362 TTGAACCAAACACGGTAAGAGATCACGCGTCGTTCGCAATGAACTTGTATTACCAGAACC 421
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 239 TTGAACCAAACACGGTAAGAGACCACGCGTCGTTCGCAATGAACTTGTATTACCAGAACC 298
Query 422 TTGGTGCCACCAAGGAACAATGCAATTTCCATAACACTGGCATTGAAGTTTCTACCGACC 481
||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 299 TTGGTGCCACCAAGGCACAATGCAATTTCCATAATACTGGCATTGAAGTTTATACCGACC 358
Query 482 CAAGCCATGGCTCGTGTATTTTCGTATCTTATTAGAATTCTAATT-CCGCTT----T-TA 535
||||||||||||||||| ||||||||||||||||| ||| ||||| ||| || | ||
Sbjct 359 CAAGCCATGGCTCGTGTGTTTTCGTATCTTATTAGCATTTTAATTTCCGGTTAACATGTA 418
Query 536 TGTG-GG-AACTTGTTAAGCCTAAACTCCAGTTAAATAAGTTG 576
|||| || |||||||| ||| |||||||||||||||||||||
Sbjct 419 TGTGTGGGAACTTGTTTGGCCGAAACTCCAGTTAAATAAGTTG 461
> Ahg496508 jgi|Araly1|496508|fgenesh2_kg.8__2324__AT5G63240.1
Length=461
Score = 623 bits (337), Expect = 5e-178
Identities = 422/462 (91%), Gaps = 10/462 (2%)
Strand=Plus/Plus
Query 124 ATAATGGTCAC-AAAACTGATGTCTCTATCATTGACGCTCATCTTCGTCCTCCTCGTATC 182
||||||||||| ||||| ||| |||||| ||||||||||| ||||| |||||||||||||
Sbjct 1 ATAATGGTCACAAAAAC-GATATCTCTACCATTGACGCTCTTCTTCTTCCTCCTCGTATC 59
Query 183 TACCGTATCCGTGAACTCGACACCAAGAAACCTCTCGCAGGCTGCTGAAAACAAAGGAGT 242
|||||||| |||||| | |||| |||||||||||||| ||| |||||||||||||||||
Sbjct 60 CACCGTATCTGTGAACGCCACACTAAGAAACCTCTCGCGGGCGGCTGAAAACAAAGGAGT 119
Query 243 ATGGTGCATAGCGGGTGACAAAGCGACAGATAAGCAACTGCAAGCGAATATAGATTGGGT 302
||||||||||||| |||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct 120 ATGGTGCATAGCGAATGACAAAGGGACAGATAAGCAATTACAAGCGAATATAGATTGGGT 179
Query 303 TTGCAGCGACGAAGGAGGATTCCGTGACTGTGGAGCGCTCAATTCCGGTGGACCTTGCTT 362
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 180 TTGCAGCGACGAAGGAGGATTCCGTGACTGTGGAGCGATCAATCCCGGTGGACCTTGCTT 239
Query 363 TGAACCAAACACGGTAAGAGATCACGCGTCGTTCGCAATGAACTTGTATTACCAGAACCT 422
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGAACCAAACACGGTAAGAGACCACGCGTCGTTCGCAATGAACTTGTATTACCAGAACCT 299
Query 423 TGGTGCCACCAAGGAACAATGCAATTTCCATAACACTGGCATTGAAGTTTCTACCGACCC 482
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 TGGTGCCACCAAGGCACAATGCAATTTCCATAACACTGGCATTGAAGTTTATACCGACCC 359
Query 483 AAGCCATGGCTCGTGTATTTTCGTATCTTATTAGAATTCTAATT-CCGCTT----T-TAT 536
|||||||||||||||| | | ||||||||||||| ||| ||||| ||| || | |||
Sbjct 360 AAGCCATGGCTCGTGTGTATACGTATCTTATTAGCATTTTAATTTCCGGTTAACATGTAT 419
Query 537 GTG-GG-AACTTGTTAAGCCTAAACTCCAGTTAAATAAGTTG 576
||| || |||||||| ||| |||||||||||||||||||||
Sbjct 420 GTGTGGGAACTTGTTTGGCCGAAACTCCAGTTAAATAAGTTG 461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21901308086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5