BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63240.1 Length=598 Score E Sequences producing significant alignments: (Bits) Value Ahg497543 jgi|Araly1|497543|fgenesh2_kg.835__1__AT5G63240.1 628 1e-179 Ahg496508 jgi|Araly1|496508|fgenesh2_kg.8__2324__AT5G63240.1 623 5e-178 > Ahg497543 jgi|Araly1|497543|fgenesh2_kg.835__1__AT5G63240.1 Length=461 Score = 628 bits (340), Expect = 1e-179 Identities = 424/463 (92%), Gaps = 12/463 (3%) Strand=Plus/Plus Query 124 ATAATGGTCAC-AAAACTGATGTCTCTATCATTGACGCTCAT-CTTCGTCCTCCTCGTAT 181 ||||||||||| ||||| ||| |||||| ||||||||||| | |||| |||||||||||| Sbjct 1 ATAATGGTCACAAAAAC-GATATCTCTACCATTGACGCTC-TACTTCTTCCTCCTCGTAT 58 Query 182 CTACCGTATCCGTGAACTCGACACCAAGAAACCTCTCGCAGGCTGCTGAAAACAAAGGAG 241 | |||||||| |||||| | |||| |||||||||||||| ||| |||||||||||||||| Sbjct 59 CCACCGTATCTGTGAACGCCACACTAAGAAACCTCTCGCGGGCGGCTGAAAACAAAGGAG 118 Query 242 TATGGTGCATAGCGGGTGACAAAGCGACAGATAAGCAACTGCAAGCGAATATAGATTGGG 301 |||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 119 TATGGTGCATAGCGAATGACAAAGGGACAGATAAGCAACTACAAGCGAATATAGATTGGG 178 Query 302 TTTGCAGCGACGAAGGAGGATTCCGTGACTGTGGAGCGCTCAATTCCGGTGGACCTTGCT 361 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 179 TTTGCAGCGACGAAGGAGGATTCCGTGACTGTGGAGCGATCAATCCCGGTGGACCTTGCT 238 Query 362 TTGAACCAAACACGGTAAGAGATCACGCGTCGTTCGCAATGAACTTGTATTACCAGAACC 421 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 239 TTGAACCAAACACGGTAAGAGACCACGCGTCGTTCGCAATGAACTTGTATTACCAGAACC 298 Query 422 TTGGTGCCACCAAGGAACAATGCAATTTCCATAACACTGGCATTGAAGTTTCTACCGACC 481 ||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| Sbjct 299 TTGGTGCCACCAAGGCACAATGCAATTTCCATAATACTGGCATTGAAGTTTATACCGACC 358 Query 482 CAAGCCATGGCTCGTGTATTTTCGTATCTTATTAGAATTCTAATT-CCGCTT----T-TA 535 ||||||||||||||||| ||||||||||||||||| ||| ||||| ||| || | || Sbjct 359 CAAGCCATGGCTCGTGTGTTTTCGTATCTTATTAGCATTTTAATTTCCGGTTAACATGTA 418 Query 536 TGTG-GG-AACTTGTTAAGCCTAAACTCCAGTTAAATAAGTTG 576 |||| || |||||||| ||| ||||||||||||||||||||| Sbjct 419 TGTGTGGGAACTTGTTTGGCCGAAACTCCAGTTAAATAAGTTG 461 > Ahg496508 jgi|Araly1|496508|fgenesh2_kg.8__2324__AT5G63240.1 Length=461 Score = 623 bits (337), Expect = 5e-178 Identities = 422/462 (91%), Gaps = 10/462 (2%) Strand=Plus/Plus Query 124 ATAATGGTCAC-AAAACTGATGTCTCTATCATTGACGCTCATCTTCGTCCTCCTCGTATC 182 ||||||||||| ||||| ||| |||||| ||||||||||| ||||| ||||||||||||| Sbjct 1 ATAATGGTCACAAAAAC-GATATCTCTACCATTGACGCTCTTCTTCTTCCTCCTCGTATC 59 Query 183 TACCGTATCCGTGAACTCGACACCAAGAAACCTCTCGCAGGCTGCTGAAAACAAAGGAGT 242 |||||||| |||||| | |||| |||||||||||||| ||| ||||||||||||||||| Sbjct 60 CACCGTATCTGTGAACGCCACACTAAGAAACCTCTCGCGGGCGGCTGAAAACAAAGGAGT 119 Query 243 ATGGTGCATAGCGGGTGACAAAGCGACAGATAAGCAACTGCAAGCGAATATAGATTGGGT 302 ||||||||||||| |||||||| ||||||||||||| | |||||||||||||||||||| Sbjct 120 ATGGTGCATAGCGAATGACAAAGGGACAGATAAGCAATTACAAGCGAATATAGATTGGGT 179 Query 303 TTGCAGCGACGAAGGAGGATTCCGTGACTGTGGAGCGCTCAATTCCGGTGGACCTTGCTT 362 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 180 TTGCAGCGACGAAGGAGGATTCCGTGACTGTGGAGCGATCAATCCCGGTGGACCTTGCTT 239 Query 363 TGAACCAAACACGGTAAGAGATCACGCGTCGTTCGCAATGAACTTGTATTACCAGAACCT 422 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 240 TGAACCAAACACGGTAAGAGACCACGCGTCGTTCGCAATGAACTTGTATTACCAGAACCT 299 Query 423 TGGTGCCACCAAGGAACAATGCAATTTCCATAACACTGGCATTGAAGTTTCTACCGACCC 482 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 300 TGGTGCCACCAAGGCACAATGCAATTTCCATAACACTGGCATTGAAGTTTATACCGACCC 359 Query 483 AAGCCATGGCTCGTGTATTTTCGTATCTTATTAGAATTCTAATT-CCGCTT----T-TAT 536 |||||||||||||||| | | ||||||||||||| ||| ||||| ||| || | ||| Sbjct 360 AAGCCATGGCTCGTGTGTATACGTATCTTATTAGCATTTTAATTTCCGGTTAACATGTAT 419 Query 537 GTG-GG-AACTTGTTAAGCCTAAACTCCAGTTAAATAAGTTG 576 ||| || |||||||| ||| ||||||||||||||||||||| Sbjct 420 GTGTGGGAACTTGTTTGGCCGAAACTCCAGTTAAATAAGTTG 461 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21901308086 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5