BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63250.1
Length=569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951127 jgi|Araly1|951127|scaffold_803014.1 549 8e-156
Ahg333412 jgi|Araly1|333412|fgenesh1_pm.C_scaffold_835000001 494 4e-139
> Ahg951127 jgi|Araly1|951127|scaffold_803014.1
Length=436
Score = 549 bits (297), Expect = 8e-156
Identities = 375/412 (91%), Gaps = 8/412 (2%)
Strand=Plus/Plus
Query 14 CATATACAAGCAATTATGGTCACAAAAACAAAAACAATGTCTCTATCATTGACACTCCTC 73
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 CATATACAAGCAAAAATGGTCACAAAAACAAAAACAATGTCTCTATCATTGACACTCCTC 65
Query 74 CTCTTCATCCTTGTTTCTACCGTCTCCGTGACCTCAACACTA-GAAAACCTTTCACCGGC 132
|||||||||||||| |||||||||||||| |||||||||| | |||| ||| || || ||
Sbjct 66 CTCTTCATCCTTGTATCTACCGTCTCCGTAACCTCAACACAAAGAAA-CCTCTCTCCAGC 124
Query 133 AGCTGAAAACAAAGGA-TATTGGTGTGTAGCGAATAAAAAAGCAACAGATGAGCAGCTAC 191
||||||||||||||| ||| |||| || |||||||| ||||| ||||||||||||||||
Sbjct 125 GGCTGAAAACAAAGGAGTAT-GGTGCGTGGCGAATAATAAAGCGACAGATGAGCAGCTAC 183
Query 192 AAGCGAATATAGATTGGTGTTGCAGCTACGAAGGAGGATTCCGTGATTGTACACAGATCA 251
||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 184 AAGCGAATATAGACTGGTGTTGCAGCTACGAAGGAGGATTCCGCGATTGTACACCGATCA 243
Query 252 ATCCCGGTGGAGTTTGCTATGAACCAAATACTCTACGAGACCACGCGTCGTACGTAATGA 311
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 244 ATCCTGGTGGAGTTTGCTATGAACCAAATACTCTAAGAGACCACGCGTCGTACGTAATGA 303
Query 312 ACTTATATTACCAGAACCTTGG-TAGAACCAAAGACCAATGCACTTTCAACGGTTCTGGC 370
| || ||||||||||| ||||| | | |||||||||||||||||||||||||| |||||
Sbjct 304 ATTTGTATTACCAGAATCTTGGCTCCA-CCAAAGACCAATGCACTTTCAACGGTACTGGC 362
Query 371 TCTGAAGTTAC-TAAAGACCCAAGCCATGACGCGTGTATTTTCATATCTTAT 421
| | ||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 363 ACCCAGGTT-CGTAAAGACCCAAGCCATGGCGCGTGTATTTTCATATCTTAT 413
> Ahg333412 jgi|Araly1|333412|fgenesh1_pm.C_scaffold_835000001
Length=375
Score = 494 bits (267), Expect = 4e-139
Identities = 341/376 (91%), Gaps = 8/376 (2%)
Strand=Plus/Plus
Query 50 ATGTCTCTATCATTGACACTCCTCCTCTTCATCCTTGTTTCTACCGTCTCCGTGACCTCA 109
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1 ATGTCTCTATCATTGACACTCCTCCTCTTCATCCTTGTATCTACCGTCTCCGTAACCTCA 60
Query 110 ACACTA-GAAAACCTTTCACCGGCAGCTGAAAACAAAGGA-TATTGGTGTGTAGCGAATA 167
|||| | |||| ||| || || || ||||||||||||||| ||| |||| || |||||||
Sbjct 61 ACACAAAGAAA-CCTCTCTCCAGCGGCTGAAAACAAAGGAGTAT-GGTGCGTGGCGAATA 118
Query 168 AAAAAGCAACAGATGAGCAGCTACAAGCGAATATAGATTGGTGTTGCAGCTACGAAGGAG 227
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 119 ATAAAGCGACAGATGAGCAGCTACAAGCGAATATAGACTGGTGTTGCAGCTACGAAGGAG 178
Query 228 GATTCCGTGATTGTACACAGATCAATCCCGGTGGAGTTTGCTATGAACCAAATACTCTAC 287
||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 179 GATTCCGCGATTGTACACCGATCAATCCTGGTGGAGTTTGCTATGAACCAAATACTCTAA 238
Query 288 GAGACCACGCGTCGTACGTAATGAACTTATATTACCAGAACCTTGG-TAGAACCAAAGAC 346
||||||||||||||||||||||||| || ||||||||||| ||||| | | ||||||||
Sbjct 239 GAGACCACGCGTCGTACGTAATGAATTTGTATTACCAGAATCTTGGCTCCA-CCAAAGAC 297
Query 347 CAATGCACTTTCAACGGTTCTGGCTCTGAAGTTAC-TAAAGACCCAAGCCATGACGCGTG 405
|||||||||||||||||| ||||| | | ||| | ||||||||||||||||| ||||||
Sbjct 298 CAATGCACTTTCAACGGTACTGGCACCCAGGTT-CGTAAAGACCCAAGCCATGGCGCGTG 356
Query 406 TATTTTCATATCTTAT 421
||||||||||||||||
Sbjct 357 TATTTTCATATCTTAT 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20794796005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5