BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63260.2
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496509 jgi|Araly1|496509|fgenesh2_kg.8__2325__AT5G63260.1 1866 0.0
Ahg937601 jgi|Araly1|937601|scaffold_501792.1 520 2e-146
> Ahg496509 jgi|Araly1|496509|fgenesh2_kg.8__2325__AT5G63260.1
Length=1634
Score = 1866 bits (1010), Expect = 0.0
Identities = 1119/1172 (95%), Gaps = 6/1172 (1%)
Strand=Plus/Plus
Query 601 ATTGGTAGGGAGAGAGTAAGGGAAAGAGACGAGGATGTGGAGAACCCAAAGCTGATGGAG 660
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 467 ATTGGTAGGGAGAAAGTAAGGGAAAGAGACGAGGATGTGGAGAATCCAAAGCTGATGGAG 526
Query 661 TGTAAGTACTACTTTAGGACTGGAGGGTGCAAATATGGAGAGTCTTGTAGATTCAGCCAC 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 TGTAAGTACTACTTCAGGACTGGAGGGTGCAAATATGGAGAGTCTTGTAGATTCAGCCAC 586
Query 721 ATGAAAGAACATAATTCTCCGGCCTCAGTACCAGAGCTTAACTTCCTTGGCCTTCCTATC 780
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 587 ATGAAAGAACATACTTCTCTGGCCTCAGGACCAGAGCTTAACTTCCTTGGCCTTCCTATC 646
Query 781 AGACCGGGAGAGAAAGAATGCCCGTTCTACATGCGCAATGGCTCCTGCAAGTTTGGATCA 840
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 647 AGACCGGGAGAGAAAGAATGCCTTTTCTACATGCGCAATGGCTCCTGCAAGTTTGGATCT 706
Query 841 GACTGCAAATTTAATCATCCTGATCCTACAGCTATCGGAGGAGTTGATTCTCCCTTGTAC 900
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
Sbjct 707 GACTGCAAATTTAATCATCCTGACCCTACGGCTATCGGAGGAGTTGATTCTCCCTTGTTC 766
Query 901 CGTGGTAATAACGGTGGATCCTTTTCCCCAAAGGCCCCATCCCAAGCAAGTTCAACTTCT 960
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CGTGGTAATAACGGTGGACCCTTTTCCCCAAAGGCCCCATCCCAAGCAAGTTCAACTTCT 826
Query 961 TGGTCTTCAACGAGACATATGAATGGTACTGGTACTGCTCCTTTTATTCCATCCATGTTC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 827 TGGTCTTCAACGAGACATATGAATGGTACTGGTACTGCTCCTTTTATTCCAGCCATGTTC 886
Query 1021 CCCCATAGTCGTGGAGTTACACCTCAAGCTTCAGACTGGAATGGGTATCAGGCGTCTTCT 1080
||||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 887 CCCCATAATCGTGGAGTTTCACCTCAAGCTCCAGAGTGGAATGGGTATCAGGCGTCTTCT 946
Query 1081 GCCTATCCACCAGAAAGGAGTCCACTTGCTCCTTCCTCATACCAGGTGAACAATTCATTG 1140
||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 947 GCCTATCCACCAGAAAGGAGTGTGCTTGCTCCTTCCACATACCCCGTGAACAATTCATTG 1006
Query 1141 GCTGAAACTAGTTCATTCTCACAATACCAACACCAGATGTCTGTTGAGGAATTCCCAGAA 1200
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1007 GCTGAAACTAGTTCATTCTCACAATACCAACACCAGATGCCTGGTGAGGAATTCCCAGAA 1066
Query 1201 CGCCCGGATCAACCAGAGTGCACTTATTATCTTAAAACTGGGGACTGTAAGTTCAAATAT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 CGCCCGGATCAACCAGAGTGCACTTATTATCTTAAAACTGGGGACTGTAAGTTCAAATAT 1126
Query 1261 AAATGCAAATACCATCATCCGAAAAATAGATTGCCGAAGCAAGCTGCATTCTCTTTCAAT 1320
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1127 AAATGCAAATACCATCATCCGAAAAATAGATTGCCAAAGCAAGCTCCATTCTCTTTCAAT 1186
Query 1321 GACAAGGGCTTGCCCCTAAGACCTGATCAGAGCATGTGCACACACTACAGCCGATATGGC 1380
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1187 GACAAGGGCTTGCCCCTAAGACCTGATCAGAGTATGTGCACACACTACAGCCGATATGGC 1246
Query 1381 ATCTGCAAATTTGGTCCAGCTTGTAGATTTGATCATTCCATACCGCCCACATTCTCGCCC 1440
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1247 ATCTGCAAATTTGGTCCAGCTTGTAGATTTGATCATTCCATACCGCCTACATTCTCGCCC 1306
Query 1441 AGCAGCTCCCAAACCGTAGAAGCTCGTCAAGTTGGCGCTAACGGAAATGAAGATGACAGC 1500
|| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1307 AGTAGCTCCCAAACCGTAGAAGCTCCTCAAGTTGGAGCTAACGGAAATGAAGATGACAGC 1366
Query 1501 TGGCATTGACATCACATGTTGAGAAGCCTGCGTAAGGGATACtttttttCTTTACCATGA 1560
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1367 TGGCATTGACATCACATGTTCAGAAGCCTGCGTAAGGGATACTTTTTTTCTTTACCATCA 1426
Query 1561 TAGGCTTTTCAGTTCTTAGGACCAAACTCTTCTTTTGGCTTTGGAATTTATGAAAACACA 1620
|||||||||||||| |||||| ||||||||||||||||||||||| ||||| |||| |||
Sbjct 1427 TAGGCTTTTCAGTTTTTAGGATCAAACTCTTCTTTTGGCTTTGGAGTTTAT-AAAA-ACA 1484
Query 1621 TTTAGGTAAATTATAGTCTCCAAACTACATCTATCTGGCAAGTCA-ATGCTTGTTTACAG 1679
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1485 TTTAGGTAAATTATAGTCTCCAAACTACATCTATCTGGCAAGTCTGATGCTTGTTTACAG 1544
Query 1680 GATTCTCAC-CTAATAACTACTGTTATGCCGCTTTAACTGTAACTATCTACTCTTTCACT 1738
|||||||| | ||||||| | | | ||||||||||||||||||||||||||||||||
Sbjct 1545 AATTCTCACAC-AATAACTTTTCTC-TCCCGCTTTAACTGTAACTATCTACTCTTTCACT 1602
Query 1739 AAGGTTCACTCTAATGGAAGCATGTCCTGTTT 1770
|||||||| |||||||||||||||| ||||||
Sbjct 1603 AAGGTTCAGTCTAATGGAAGCATGTTCTGTTT 1634
Score = 660 bits (357), Expect = 0.0
Identities = 445/483 (92%), Gaps = 24/483 (5%)
Strand=Plus/Plus
Query 84 tgatttgatcttctcttctCGGTTGAAATTAGGGATTTCTGTAAAATTGTAATGTG-TTT 142
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TGATTTGATCTTCTCTTCTCGGTTGAAATTAGGGATTTCTGTAAAATTGTAATGTGATTT 60
Query 143 CTGAGTAAATCATGAGCAAGCCCGAAGAAACTTCCGACCCGAACCCAACCGGACCCGATC 202
||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 61 -TGAGTAAATCATGAGCAAGCCCGAAGATATTTCCGACCCGAATCCAACCGGACCCGATC 119
Query 203 CGTCTCGATCTTCCTCCGATGAGGTCACCGTCACCGTCGCCGATCGGGCTCCGTCTGATC 262
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 CGTCTCGATCTTCCTCCGATGAGGTCACCGTCACCGTCGCCGATCAGGCTCCGTCTGATC 179
Query 263 TCAATCACGTTTCTGAGGAGCTAAGTGATCAATTGAGGAATGTGGGTTTGGATGATTCTG 322
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 180 TCAATCACGTTTCTGAGGAGCTAAGTGATCAATTCAGGAATGTGGCTTTGGATGATTCTG 239
Query 323 CGAAAGAGCTGAGTGTTCCGATTAGTGTCCCTCAAGGTAATGTAGAAACGGATTCGAGGG 382
||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 240 CGAAAGAGCTGAGTGTTCCGATTAGTGTC----AA--T---GTAGAAACGGATTCGAGGG 290
Query 383 CATTATTCGGCAGCGATCAAAAGGAGGAAGAAGAA-G-G-GAGC--GA--GA-A-GAGAA 433
||||| |||||||||||||||||||||||||| | | ||| || || | |||||
Sbjct 291 CATTA---GGCAGCGATCAAAAGGAGGAAGAAGAGCGTGAGAGTATGATTGAGAAGAGAA 347
Query 434 TGATGATGGTGTATCCAGTGAGACCTGATTCAGAGGATTGTTCGTTTTATATGAGAACTG 493
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 348 TGATGGTGGTGTATCCAGTGAGACCTGACGCAGAGGATTGTTCGTTTTATATGAGAACAG 407
Query 494 GAAGCTGCAAATACGGATCAAGTTGCAAGTTCAATCACCCTGTTCGCAGGAAACTTCAAG 553
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 408 GAAGCTGCAAATACGGATCAAGTTGCAAGTTCAATCACCCTCTTCGAAGGAAACTTCAA- 466
Query 554 ATT 556
|||
Sbjct 467 ATT 469
> Ahg937601 jgi|Araly1|937601|scaffold_501792.1
Length=1385
Score = 520 bits (281), Expect = 2e-146
Identities = 698/892 (78%), Gaps = 58/892 (7%)
Strand=Plus/Plus
Query 652 CTGATGGAGTGTAAGTACTACTTTAGGACTGGAGGGTGCAAATATGGAG-AGTCTTGTAG 710
||||| || || ||||| ||||||||||||||||||||||||||||||| | | ||||||
Sbjct 502 CTGATTGATTGCAAGTATTACTTTAGGACTGGAGGGTGCAAATATGGAGAAAT-TTGTAG 560
Query 711 ATTCAGCC--ACATGAAAGAACA-TAATTCTCCGGCCTCAGTACCAGAGCTTAACTTCCT 767
||||| || || | | || | | || || ||||||| ||| ||||||||||||||
Sbjct 561 ATTCAACCATACCT-TACCAA-AGT-CTTGTCTGGCCTCACCACCCGAGCTTAACTTCCT 617
Query 768 TGGCCTTCCTATCAGACCGGGAGA-GAAAGAATGCCCGTTCT-ACATGCGCAATGGCTCC 825
|||||||||||||||||||||||| | | |||||||| || | |||||||||||||||||
Sbjct 618 TGGCCTTCCTATCAGACCGGGAGAAGTA-GAATGCCC-TTATTACATGCGCAATGGCTCC 675
Query 826 TGCAAGTTTGGATCAGACTGCAAATTTAATCATCCTGATCCTACAGCTATCGGAGGAGTT 885
||||| || ||| | || ||||||||||||||||||||||||||| | ||||||||| |
Sbjct 676 TGCAAATTCGGAGCTGAGTGCAAATTTAATCATCCTGATCCTACAACCATCGGAGGAACT 735
Query 886 GATTCTCCCT-TG-TACCGTGGTAATAACGGTGGATCC-TT------TTC-C-CCAAAGG 934
|| |||||| | | | ||||||||| | || |||| || || | ||||||
Sbjct 736 GA--CTCCCTATCATTTCATGGTAATAATGATGTATCCATTGGAACATTTTCTCCAAAGT 793
Query 935 CCCCATCCCAAGCAAGTTCAACTTCTTGGTCTTCAACGAGACATATGAATGGTACTGGTA 994
| ||| |||||||||||||||||| ||| ||||| | || ||| |||||||||| |
Sbjct 794 CTACATTCCAAGCAAGTTCAACTTCCTGGACTTCACCAAGGCATGTGAATGGTAC----A 849
Query 995 CTGCTCCTTTTATTCCA-TCCATGTTCCCCCATAGTCGTGGAGTTACACCTCAAGCTTCA 1053
| |||||||||||||| || ||| | | || | || ||||||| || ||||| || |
Sbjct 850 -T-CTCCTTTTATTCCAGTC-ATGCTGTCACAAACTCATGGAGTTCCATCTCAAACTCCG 906
Query 1054 GACTGGAATGGGTATCAGGCGTCTTCTGCCTATCCACCAGAAAGGAGTCCACTTGCTCCT 1113
|| |||||||| |||||||| ||| || ||| || | |||||| || || |||||
Sbjct 907 GAATGGAATGGCTATCAGGCTTCTG-TG--TATTCATCTGAAAGGGGTGTGTTTTCTCCT 963
Query 1114 TCCTC-A--TACCAGGTGAACAATTCATTGGCTGAAACTAGT-TCATTCTCACAATACCA 1169
||| | | |||| ||||||||| || |||||||| ||| | || ||||||||||
Sbjct 964 TCCACCACATACCTTATGAACAATTTATCAGCTGAAACAAGTATG-TTGTCACAATACCG 1022
Query 1170 ACACCAGATGTCTGTTGAGGAATTCCCAGAACGCCCGGATCAACCAGAGTGCACTTATTA 1229
||| || ||| ||| ||| ||||| |||||||| || || ||||| ||||||| ||||||
Sbjct 1023 ACATCAAATGCCTGCTGAAGAATTTCCAGAACGTCCAGACCAACCTGAGTGCAGTTATTA 1082
Query 1230 TCTTAAAACTGGGGACTGTAAGTTCAAATATAAAT-GCAAATACCATCATCCGAAAAATA 1288
| | ||||||||||||||||||||||||| | ||| |||||||||| ||||| || |||
Sbjct 1083 TATGAAAACTGGGGACTGTAAGTTCAAAT-TCAATTGCAAATACCACCATCCTAAGAATC 1141
Query 1289 GATTGCCGAAGCAAGC-TGCATTCT-CTTTCAATGACAAGGGCTTGCCCCTAAGACCTGA 1346
|||||||||||| || | | || | || ||||||||||||| || ||||| ||||||||
Sbjct 1142 GATTGCCGAAGCT-GCCTCC-TTATGCTCTCAATGACAAGGGTTTACCCCTTAGACCTGA 1199
Query 1347 TCAGAGCATGTGCACACACTACAGCCGATATGGCATCTGCAAATTTGGTCCAGCTTGTAG 1406
||| | ||| |||||| | ||||| || || |||||||||||||| ||||||||||||||
Sbjct 1200 TCAAAACATCTGCACATATTACAGTCGGTACGGCATCTGCAAATTCGGTCCAGCTTGTAG 1259
Query 1407 ATTTGATCATTCCATACC-GCCCACAT-TCTCGCCCAGCA-GCTCCCAAACC---GTAGA 1460
||| || |||||| | || ||| ||| | ||| | || | ||||||| || |||||
Sbjct 1260 ATTCGACCATTCCGT-CCAGCCGTCATAT-TCGAC-AGAAAGCTCCCAGGCCATTGTAGA 1316
Query 1461 AGCTCGTCAAGTTGGCGCTAACGGAAATGAA-GATGACAGCTGGCATTGACA 1511
| ||| ||| || | || || || |||||| | |||| | ||| |||||||
Sbjct 1317 ACCTCCTCAGGTCAGTGCAAATGGGAATGAAAG-TGACGGTTGGAATTGACA 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68524350755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5