BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63270.1
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918108 jgi|Araly1|918108|Al_scaffold_0008_2859 405 7e-113
> Ahg918108 jgi|Araly1|918108|Al_scaffold_0008_2859
Length=243
Score = 405 bits (219), Expect = 7e-113
Identities = 236/244 (97%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGAAAACAAAGGGAAACCATTGCCAAAGTTTGGGGAATGGGATGTGAACAATCCG 60
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGGAAACAAAGGGAAGCCATTGCCAAAGTTTGGGGAATGGGATGTGAACAATCCC 60
Query 61 GCATCAGCCGAAGGATTCACAGTCATTTTCAGCAAAGCTAGTGACGAGAAGAAGACCAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCATCAGCCGAAGGATTCACAGTCATTTTCAGCAAAGCTAGTGACGAGAAGAAGACCAAG 120
Query 121 AAAGCATCCGGCGCTGGCCCTAATAGTCTGGTTTCACCTCAGAGAAACCAAAACTCCGAT 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 AAAGCATCCGGCGCTGGCCCTAATAGTCTGGTTTCACCTCAGGGAAACCAAAACTCCGAT 180
Query 181 CAAAACAATAACCAT-AGTTCCCAAAACCCTAAAGCTAAGAACAAATGGTTTTGCTTCCG 239
||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 CAAAACAATCACCATGA-TTCCCAAAACCCAAAAGCTAAGAACAAATGGTTTTGCTTCCG 239
Query 240 TTAA 243
||||
Sbjct 240 TTAA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8401417420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5