BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63280.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496511 jgi|Araly1|496511|fgenesh2_kg.8__2327__AT5G63280.1 1520 0.0
Ahg496512 jgi|Araly1|496512|fgenesh2_kg.8__2328__AT5G63290.1 71.3 2e-11
> Ahg496511 jgi|Araly1|496511|fgenesh2_kg.8__2327__AT5G63280.1
Length=1149
Score = 1520 bits (823), Expect = 0.0
Identities = 1083/1198 (90%), Gaps = 60/1198 (5%)
Strand=Plus/Plus
Query 4 TAGAAATTTTGCAGAAATCAAATT-TTGTCGCTAAAATCCCCACACAGTTCGATGGGAAG 62
|||||||||||||||||||||||| ||||||||||||| | ||||| || ||||||||
Sbjct 1 TAGAAATTTTGCAGAAATCAAATTCTTGTCGCTAAAAT---CTCACAGCTCAATGGGAAG 57
Query 63 ACTTTGGGAATCACTGCCCGTGATTCTTCTACTCTTAGTTCTTCTTCTTCATCAATCAGT 122
|||||| |||||||||||||||||||||||||| || | ||||||||| ||||||||| |
Sbjct 58 ACTTTGTGAATCACTGCCCGTGATTCTTCTACTGTTTGCTCTTCTTCTCCATCAATCACT 117
Query 123 CTCTCAGGGGTTTGAAGAATCTGAATCTACTAGATTGGTTAACGAAGAAGTAGAAGTTAG 182
||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 118 CTCTCAGGGTTTTGAAGAATCTGAATCTACTAGATTGGTTAACGAAGAAGTAGGAG---G 174
Query 183 TAATGCTCCAGAAATACATTGTTCCCGAGAAAGAAGTCGAGCAGCTTGGCAGATTATACA 242
|||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 175 TAATTCTCCAGAAATACATTGTTCACGAGAAAGAAGCCGAGCAGCTTGGCAGATTATTCA 234
Query 243 AGATTATTTGACGCCATTTGTGGAACGGGAAAGATATGAAATTCCAAAAAATTGTAGGCT 302
|||||||||||| || ||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 235 AGATTATTTGACACCGTTTGTGGAACGGGAAAGATATCAAATTCCAAAGAATTGTAGGCT 294
Query 303 GCATCCTGATAATGATTTATACAGAGATCAGGAACATCATAAGGTTCATGTTGATGTCTT 362
||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||
Sbjct 295 TCATCCTGATAATGATTTATACAGAGATCAGGAACAGCATAAGATTCACGTTGATGTCTT 354
Query 363 CGAATGGAAATGTGGTTACTGCAAGAAAAGTTTCAATGATGAGAAATTTCTTGACAAGCA 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CGAATGGAAATGTGGTTACTGCAAGAAAAGTTTCAATGATGAGAAATTTCTTGACAAGCA 414
Query 423 TTTCAGTACTAGACATTATAATCTTTTAAATACGACTGATACAAAGTGTTTAGCCGACCT 482
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 415 TTTCAGCACTAGACATTATAATCTTTTGAATACGACTGATACAAAGTGTTTGGCCGACCT 474
Query 483 GTGTGGTGCATTGCATTGTGACTTTGTATTGAGCTCTAAGAAACCCAAGAGCAAGTGCAA 542
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 475 GTGTGGTGCATTGCATTGCGACTTTGTATTGAGCTCTAAGAAACCGAAGAGCAAGTGCAA 534
Query 543 CCCT-CCTGCTGTTGCCAAAAACCGTCATCTCTGCGAGAGCGTTGCCAATAGTTGTTTCC 601
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CCCTGCC-GCTGTTGCCAAAAACCGTCATCTCTGCGAGAGCGTTGCCAATAGTTGTTTCC 593
Query 602 CAGTGAGTCAAGGTCCCTCAGCTAGTCGTCTTCATGAACACTTTTTGCGCCAATTCTGTG 661
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 594 CAGTGAGTCAAGGCCCCTCAGCTAGCCGTCTTCATGAACACTTTTTGCGCCAATTCTGTG 653
Query 662 ATGCTCATACCTGCACTGGAAATGATAAACCCTTTCCTAGAGGAGGCAAGAAGAAATCGG 721
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 654 ACGCTCATACCTGCACTGGAAAAGATAAACCGTTTCCTAGAGGAGGCAAGAAGAAATCGG 713
Query 722 GTGTCTTCTACCTCGCCATTTCAATATTGACCTTGATGCTACTCCCACTCTTTTATCTTC 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GTGTCTTCTACCTCGCCATTTCAATATTGACCTTGATGCTACTCCCACTCTTTTATCTTC 773
Query 782 TAGTCTTCTTACATCAAAGAGAAAAGAGAAGCGGAACACAAGATTTGCGTCGTATTATAA 841
||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 774 TAGTCTTCTTATATCAAAGAGAAAAGAGAAGCGGAACACAAGAGTTGCGTCGGATTAGAA 833
Query 842 AATCTGGaaaaaaaaCAAAACCGTCATAAGATGGTAA-GCT-TCAAACTGCTCTTGAGAT 899
|| ||||||||||| ||||||| |||||| || |||| || || || | | |||||
Sbjct 834 AAACTGGAAAAAAACCAAAACCTTCATAATATCGTAATCCTCTC-AA-T--T-ATGAGAG 888
Query 900 A-CAG--GATGTTCAAATCCGATATTGGTTTGGTGAATCACAAATCTTCCTCATTACTTC 956
| ||| | ||||||||||||||||||||||||||||| | | |||| | |||
Sbjct 889 AGCAGAAGGTGTTCAAATCCGATATTGGTTTGGTGAAT--C--A----CCTC--T--TTC 936
Query 957 TCCATCTCAGACCTTTCCTCATTTGGTGTTTCTCAAACCAGAGACTTATGGATT-CCAAA 1015
||| | | | || ||| ||||| ||||||| ||||||||||| |||||
Sbjct 937 -ACAT-T---A-C-TT-CTC--------CTTCTCGAACCAGATACTTATGGATTCCCAAA 980
Query 1016 CGAGAGTATTTC-TATGTGGTTATGAAGCTAGTTGCTATGGATATCAGATGGATTACATA 1074
|||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 AGAGAGTGTTTCGT-TGGGGTTATGAAGCTAGTTGCTATGGATATCAGATGGATTACATA 1039
Query 1075 GACAAATGATTTTTCTGTAAGCTTGTAAAAACAGATGATTCCTTCCACAAAATAGGAATA 1134
| | || | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1040 G----A-GA----T-TGTAAGCTTGTAGAAACAGATGATTCCTTCCACAAAATAGGAATA 1089
Query 1135 GTGATTAGATTTTTCTCTGTAATTTTATCGAATCTTCATACATATCAATGATAACATC 1192
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1090 GTGATTAGATTTTTCTCTGTAATTTTATCGAATCTTCATACATATCAATGATAATATC 1147
> Ahg496512 jgi|Araly1|496512|fgenesh2_kg.8__2328__AT5G63290.1
Length=1571
Score = 71.3 bits (38), Expect = 2e-11
Identities = 44/47 (94%), Gaps = 0/47 (0%)
Strand=Plus/Minus
Query 1161 ATCGAATCTTCATACATATCAATGATAACATCAAGGTTGAAACACAA 1207
|||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 1571 ATCGAATCTTCATACATATCAATGATAATATCCAGTTTGAAACACAA 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5