BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G63300.2

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496513 jgi|Araly1|496513|fgenesh2_kg.8__2329__AT5G63300.1         628    1e-179


> Ahg496513 jgi|Araly1|496513|fgenesh2_kg.8__2329__AT5G63300.1
Length=680

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 394/419 (94%), Gaps = 7/419 (2%)
 Strand=Plus/Plus

Query  1    ATGGCGCTAGAATCGATAGtctctctctcggagcttctctcttcccttctctcGTCGAAA  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  8    ATGGCGCTAGAATCGATAGTTTCTCTCTCGGAGCTTCTCTCTTCCCTTCTCTCGTCGAAA  67

Query  61   CCACCGTCTCCGTCGAGTCTGAAACCTATCACGCTTCCGTCTTCCGTATCCGCGAGAACG  120
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct  68   CCGCCGTCTCCGTCGAGTCTGAAACCTATCACGCTTCCGTCTTCCGTATCCGCGAGATCA  127

Query  121  TCACAGCATTTGTCGATGACGACGAAGATTTTAACGGCCGAGCACGATGACGTCATCAAT  180
            ||||||||||||||||||||||  | |||||||||||| |||||||||||||||| ||||
Sbjct  128  TCACAGCATTTGTCGATGACGA--A-GATTTTAACGGCTGAGCACGATGACGTCACCAAT  184

Query  181  CGAGTGGCGTATCCTTCGCTGGCGAACGCGAATCTCGTATTCTTCAAGTCCAGTTACTAC  240
            |||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||| |||
Sbjct  185  CGAGTGGCTTATCCTTCGCTGGCGAACGCGAACCTCGTCTTCTTCAAGTCCGGTTATTAC  244

Query  241  AACGTCGAGGTGGTGCCTAAAGACGGCGAATCGGAGGAGCAGCTGGTT-AACGATTTCAA  299
            |||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct  245  AACGTCGAAGTGGTGCCTAAAGACGGCGAATCGGAGGAGCAGCTG-TTGAACGATTTCAA  303

Query  300  GAGGTCGTGTTTCAGAGCGGGTGTGTTGCAGGAATCTCGAAGACGACGCTTCTTCGAGAG  359
            |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct  304  GAGGTCGTGTTTCAGAGCCGGTGTGTTGCAGGAATCTCGAAGACGACGATTCTTCGAGAG  363

Query  360  CTCTCTGGAGAAGAAG-ACGCGGAAGACCAAAGAAGCTGCGAAGAAGTATCGGAAAAGG  417
            ||||| |||||| ||| |  |||||||||||||||||||| ||||||||||||||||||
Sbjct  364  CTCTCAGGAGAA-AAGGATACGGAAGACCAAAGAAGCTGCTAAGAAGTATCGGAAAAGG  421


 Score =  226 bits (122),  Expect = 2e-58
 Identities = 148/160 (93%), Gaps = 3/160 (2%)
 Strand=Plus/Plus

Query  495  AGGAGACCAAACCCTAAACCAAAACCACTATCAACTTCAGAGATCCGCAAGCACAACAGA  554
            ||||||||||||||||||||||| || | | ||||||||||||||||||||   | ||||
Sbjct  419  AGGAGACCAAACCCTAAACCAAAGCCGCAAACAACTTCAGAGATCCGCAAG---AGCAGA  475

Query  555  AATGCATCCAGAGAAGACGAACAAGACGATCACTGGGAACTTCCTCCTGAGGACATTGAG  614
            |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  476  AATGTATCCAGAGAAGACGAAGAAGACGATCACTGGGAACTTCCTCCTGAGGACATTGAG  535

Query  615  ATTCCATATACCAACCGGTCTTAGAAGTAAACCGGAATGA  654
            ||||| ||||| ||||||||||||||||||||||||||||
Sbjct  536  ATTCCGTATACAAACCGGTCTTAGAAGTAAACCGGAATGA  575



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23979314793


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5