BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63320.1
Length=3649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496518 jgi|Araly1|496518|fgenesh2_kg.8__2334__AT5G63330.2 2132 0.0
> Ahg496518 jgi|Araly1|496518|fgenesh2_kg.8__2334__AT5G63330.2
Length=1784
Score = 2132 bits (1154), Expect = 0.0
Identities = 1344/1431 (94%), Gaps = 31/1431 (2%)
Strand=Plus/Plus
Query 459 AAACGATGGGTAAAGCGCGGAAACACTCTAGAGGGAGACCATCAGGCTTTGTTCCTGATT 518
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AAACGATGGGCAAAGCGCGGAAACACTCTAGAGGGAGATCATCAGGCTTTGTTCCTGATT 300
Query 519 ACATGCAAGC---T--G----TTGAGCCTGATGAATTTGTTTACTC----A-GA--GA-- 560
|||||||||| | | ||||||||||||||||||||||||| | || ||
Sbjct 301 ACATGCAAGCTGTTGAGACCATTGAGCCTGATGAATTTGTTTACTCAGGGAGGATTGATT 360
Query 561 --G-GATG--A-ATTCTGAGGCGTCTCCTCCACTGAAAAGGAGACGTTTTGGTTTGAATG 614
| |||| | |||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 361 CTGTGATGAAACATTCTGAGGCCTCTCCTCCATTGAAAAGGAGACGTTTTGGTTTGAATG 420
Query 615 GAGATAACAATGGCGTTTCTAAAGAGGTTTTGTC-TCTGTCAAAGATGTCGAGGTCTGAG 673
|||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 421 GAGATAGCAATGGCGTTTCTAAAGAGGTTTTGTCGT-TGTCAAAGATGTCGAGGTCTGAG 479
Query 674 AGAAAGAATTTAGTTCACAAGTTGAAGATGGAGCTTCAACAGGTCAGGGACCTTAGTAAG 733
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGAAAAAATTTAGTTCACAAGTTGAAGATGGAGCTTCAACAGGTCAGGGACCTTAGTAAG 539
Query 734 AAGATTGCATCTTTCAGTTCAGACACTGTTCTGTTGTCGCCATACAATG--A-TCATAGC 790
||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 540 AAGATTGCATCTTTCAGTTCAGATGCTGTTCTGTTGTCGCCATACAATGATATTCATAGC 599
Query 791 TGCAGTGATGGGCCTAGGAGGCCGCCACCAGAAAACTTTGCTACATTTGTTGGGTCACAG 850
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 TGCAGTGATGGGCCTAGGAGGCCGCCACCAGAAAACTTTGCTAAATTTGTTGGGTCACAG 659
Query 851 GGCAAAAAGCGCCCTCCTGTGCGCAGTGATAAGCAGCGGAATAAGAAAGGTCCATCTCGA 910
||||||||||| ||||||||||||| ||||||||| |||| |||||||||||||||||||
Sbjct 660 GGCAAAAAGCGTCCTCCTGTGCGCAATGATAAGCACCGGACTAAGAAAGGTCCATCTCGA 719
Query 911 TTAAATGTCCCAACAAGTTATACTGTTGCTTCAGTGATGAAGGAGTGTGAGACGTTACTC 970
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTAAATGTCCCAACAAGTTCTACTGTTGCTTCAGTGATGAAGGAGTGTGAGACGTTACTC 779
Query 971 AATCGTTTATGGTCACATAAGTCGGGGTGGCCATTTCGTACTCCAGTTGATCCAGTGATG 1030
|||||| | ||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 780 AATCGTCTGTGGTCACATAAGTTGGGGTGGGCATTTCGTACTCCAGTTGATCCAGTGATG 839
Query 1031 TTGAATATTCCAGACTATTTTAATGTGATTAAACATCCAATGGATCTTGGAACGATACGA 1090
|||||||| ||||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 840 TTGAATATACCAGACTATTTTACTGTGATTAAGCACCCAATGGATCTTGGAACGATACGA 899
Query 1091 AGCAGGCTGTGTAAAGGTGAATACTCTAGTCCTTTGGACTTTGCAGCAGATGTGCGTCTT 1150
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 900 AGCAGGCTGCGTAAAGGTGAATACTCTAGTCCTTTGGACTTCGCAGCAGATGTGCGTCTT 959
Query 1151 ACATTTTCAAATTCTATAGCTTACAATCCACCAGGAAATCAGTTCCATACTATGGCTCAG 1210
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ACATTTTCAAATTCTATAGCTTACAATCCACCAGGAAATCAGTTCCATACTATGGCTCAA 1019
Query 1211 GGTATCAGTAAATATTTTGAATCGGGATGGAAAAGTATAGAGaaaaaaaTACCTATGTCT 1270
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1020 GGTATCAGTAAATATTTTGAATCGGGATGGAAAAGTATAGAGAAAAAAATACCTGTGACT 1079
Query 1271 AAACCACCAGTTATTCCCCTAACCAGTTCTGCTTCTCTGGAGTCTGAAATCCCTTTCGAA 1330
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1080 AAACCACCAGTCATTCCCCTAACCAGTTCTGCTTCTCTGGAGTCTGAAATTCCTTTTGAA 1139
Query 1331 GTAGCACCGATGAGAAAGAAGGAAGCTGCAATGAACGATAACAAGCTGAGGGTGGAACCT 1390
||||||||| ||||||| || ||||||||||||||| | |||||||||||||||||||
Sbjct 1140 GTAGCACCGTTGAGAAATAAATCAGCTGCAATGAACGAGAGCAAGCTGAGGGTGGAACCT 1199
Query 1391 GCTAAGTTGGTCATGACAGATGGTGAGAAGAAAAAATTAGGCCAAGATCTGATGGCATTA 1450
||||||||||||||||||||| |||||||||||||||| |||| |||||| |||| |||
Sbjct 1200 CCTAAGTTGGTCATGACAGATGATGAGAAGAAAAAATTAAGCCAGGATCTGGTGGCGTTA 1259
Query 1451 GAAGAAGATTTCCCTCAAAAGATT-GCTGATCTCCTGAGAGAGCAAAGTGGCAGTGATGG 1509
|||||||| ||||| ||||| ||| | |||| ||||||||||||||||||||||||||||
Sbjct 1260 GAAGAAGAGTTCCCACAAAACATTAG-TGATTTCCTGAGAGAGCAAAGTGGCAGTGATGG 1318
Query 1510 TCAATCTGGAGAAGGTGAGATTGAGATAGATATAGAAGCGCTTTCTGATGAAATCTTGTT 1569
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1319 TCAATCTGGAGAAGTTGAGATTGAGATAGATATAGAAACGCTTTCTGATGAAATCTTGTT 1378
Query 1570 CATGGTTCGGAAACTCCTGGATGACTATTTAAGGGAGAAAAAGAAATCCATGGAAAAGAG 1629
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1379 CATGGTTCGGAAACTCCTGGATGACTATTTAAGGGAGAAAAAGAAATCCCTGGAAAAGAG 1438
Query 1630 CGAACCTTGTGAGATGGAGATTGTTCATGACTCTGGATTCAGTAATTCCCCTTTGCAGCC 1689
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1439 CGAACCTTGTGAGATGGAGATTGTTCATGACTCTGGATTCAGTAATTCCCCTCTGCAGGC 1498
Query 1690 TAGTAAAGGTGATCTGCAAATTGACGAGGATGTTGACATAGTTGGTGGGAATGACCCCTC 1749
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1499 TAGTAAAGGAGATCTGCAAATTGACGAGGATGTTGACATAGTTGGTGGGAATGACCCTTC 1558
Query 1750 GGTCTCAAGCCATCCTCCTCTTAAGATAGAAAAAGATGCTGCATGTAGAAATAATGAAAG 1809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GGTCTCAAGCCATCCTCCTCTTAAGATAGAAAAAGATGCTGCATGTAGAAATAATGAAAG 1618
Query 1810 CAGCAGTTCGAGTAGCTCTAGTAGTGAATCAGGCTCTTCATCTAGTGATTC 1860
||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1619 CAGCAGTTCGAGTAGCTCTAGTAGTGAATCAGGGTCTTCATCTAGTGGTTC 1669
Score = 257 bits (139), Expect = 3e-67
Identities = 179/197 (91%), Gaps = 7/197 (4%)
Strand=Plus/Plus
Query 4 GATCTAGGGTTTT-CCAAATCGATTTTGGTACCttttttttGACTCAGTCGAGGGTTTTT 62
||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 51 GATCTAGGGTTTTCCCAAATCGATTTTGGTA-TTTTTTTTTTACTCAGTCGAGGGTTTTT 109
Query 63 CTAGGGTTTCGATT-AGCTTTTTTGCCAATTGCCGTTGAGGAAGATACT-TCTTCGGTGA 120
|||||||||||||| |||||||| |||||||||||||||||||| | | || |||||||
Sbjct 110 CTAGGGTTTCGATTTAGCTTTTTCCCCAATTGCCGTTGAGGAAGACAATCTCCTCGGTGA 169
Query 121 ATTTGATTT-GATTTTGACCTGAGGGAGAAGCAAGAAGCTTAGACCAATTGGGATTCTCA 179
||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 170 ATTTGATTTTGATTTTGACCTGAGGGAGAAGGAAGAAGCTTAGACCAATTCG-ATTCTCA 228
Query 180 GTTT-GGTAAGTCAACG 195
||| ||||||| ||||
Sbjct 229 ATTTTGGTAAGTAAACG 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137844529406
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5