BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63350.1
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496519 jgi|Araly1|496519|fgenesh2_kg.8__2335__AT5G63350.1 1421 0.0
> Ahg496519 jgi|Araly1|496519|fgenesh2_kg.8__2335__AT5G63350.1
Length=1061
Score = 1421 bits (769), Expect = 0.0
Identities = 913/982 (93%), Gaps = 12/982 (1%)
Strand=Plus/Plus
Query 60 ATGGACGGTAGGGGAGGTTGTTGCATAGCCAGATATGGTGGTTACGGTGGTCGCTACGGT 119
||||||||||| ||||| |||||||||||||||||||| | |||||||||||| || |||
Sbjct 36 ATGGACGGTAGTGGAGGCTGTTGCATAGCCAGATATGGCGTTTACGGTGGTCGTTATGGT 95
Query 120 CTCTCCAAAGCAGATCGAATCATGCTTCGTTTTCGTCCCATTGCTCCTAAACCGGCCAGC 179
||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 96 CTCTCCAAAGCTGATCGAATCATGCTTCGATTCCGTCCCATTGCTCCTAAACCAGCCAGC 155
Query 180 GA---CGGTGGAAGTGTCTCT--C-TCACCGGGAAG-AGCGGCTCCACCACAACTACAAG 232
|| ||| |||||||||||| | ||||||| ||| | ||||||| |||||||||||||
Sbjct 156 GACGGCGGCGGAAGTGTCTCTCCCGTCACCGGAAAGTA-CGGCTCCCCCACAACTACAAG 214
Query 233 TGGTGGAAGCTCCGATCTCTCAGGTAAATCTGGGAGAGGAAAGAGAAAGTATCAAAAAGA 292
||||||||||||||| | || ||||||||||||||||||||||| ||||| || | |||
Sbjct 215 CGGTGGAAGCTCCGATGTTTCCGGTAAATCTGGGAGAGGAAAGAGGAAGTACCAGAGAGA 274
Query 293 TTGTTCCGGTGGGAACTCCCGAAGGTGCAATAAGAAGAAGAGAGATCTAAGTGGAGACAC 352
| ||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 275 TAGTTCCGGCGGTAACTCCCGAAGGTGCAATAAGAAGAAGAGAGATCTCAGTGGAGATGC 334
Query 353 TGCTACTACCACGGCGGTTACATTGTCTCTTTTACCAGAGACGCCTGAGAAACG-AGTTT 411
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 335 TGCTACTACCACGGCGGTTACATTGTCTCTTTTACCAGAGACGCCTGATAAA-GCAGTTT 393
Query 412 TTCCAGATCTGAATGCTTTTCCGGTGGAGAAGCAGAAGCGAAACGGTCCTTTATGGCTGA 471
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 394 TTCCAGATCTGAATGCTTTTCCGGTAGAGAAACAGAAGCGAAACGGTCCTTTATGGCTGA 453
Query 472 GTTTCAACGGCGGTGGTGAGATTTTAACGCCGTACAAAACGGCGGAGATATCACGAAGGA 531
|||||||||||||| ||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 454 GTTTCAACGGCGGTAGTGAGATGTTAACGCCGTACAATTCGGCGGAGATATGTCGAAGGA 513
Query 532 CGGTGGTGGTTTCGTCGTGTGTGACGGTTGAGCGTGTGACTGACGCTTGGATCGACGGTT 591
||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 514 CGGTGGTTGTTTCGTCGTGTGTGACGGTTGAACGTGTGACTGACGCATGGATCGACGGTT 573
Query 592 ATGGATTAGGGGAGACAAATCAGGAGAGGAAGATGAATCTAGTGGAAGACACGTGTCCTG 651
||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||||||||
Sbjct 574 ATGGATTAGGGAAGACAAATGAGGAGAGGAAGATGAATCTTGTGAAAGACACGTGTCCTG 633
Query 652 GTTTTATATCGGACGGTGTAGGGAGAGTCACGTGGACCAATGAGGCGTATAAGAAGATGG 711
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GTTTTATATCGGACGGTGCAGGGAGAGTCACGTGGACCAATGAGGCGTATAAGAAGATGG 693
Query 712 CTAGAGAAGATATTAATATTCCGATGGAGGAAGGTGTACCGGAGGATATTAGTTACGATA 771
|||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 694 CTAGAGAAGATATTAATATTCCGATGGAGGAAGGTGTACCGGAGGAGATGAATTACGATA 753
Query 772 ATTTTCACGTGAACGTACGGTTAGTGATGAAGGAGAGGCCGATGCTAACGTACCCAGCTT 831
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 ATTTTCACGTGATCGTACGGTTAGTGATGAAGGAGAGGCCGATGCTAACGTACCCAGCTT 813
Query 832 TCACATGCAGAGTGAGATTACAGTACACGTGTCAAGATCGAGAAAGAGGATCCGTCACGG 891
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 814 TTACATGCAGAGTGAGATTACAGTACACGTGTCAAGATCGAGAAAGAGGTTCCGTCACGG 873
Query 892 TGCCTTGTGACGTGTGGAGAATGGACGGCGGTGGTTTTGCGTGGAGGCTTGACGTTAAGG 951
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 874 TGCCTTGTGACGTGTGGAGAATGGACGGCGGTGGTTTTGCGTGGAGACTTGACGTTAAGG 933
Query 952 CAGCTTTGTGTCT-GTGACGTTCTTTCATTCGCCACCGTTGGATTTACAATGGTGAAAAT 1010
|||||||||| || |||||||||||||| || || || ||||||| ||||||||||||||
Sbjct 934 CAGCTTTGTG-CTTGTGACGTTCTTTCAATCTCCGCCATTGGATTCACAATGGTGAAAAT 992
Query 1011 GATGAATGGTCCCGATCGTATC 1032
|||||| |||||||||||||||
Sbjct 993 GATGAACGGTCCCGATCGTATC 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44184460803
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5