BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63350.1 Length=1184 Score E Sequences producing significant alignments: (Bits) Value Ahg496519 jgi|Araly1|496519|fgenesh2_kg.8__2335__AT5G63350.1 1421 0.0 > Ahg496519 jgi|Araly1|496519|fgenesh2_kg.8__2335__AT5G63350.1 Length=1061 Score = 1421 bits (769), Expect = 0.0 Identities = 913/982 (93%), Gaps = 12/982 (1%) Strand=Plus/Plus Query 60 ATGGACGGTAGGGGAGGTTGTTGCATAGCCAGATATGGTGGTTACGGTGGTCGCTACGGT 119 ||||||||||| ||||| |||||||||||||||||||| | |||||||||||| || ||| Sbjct 36 ATGGACGGTAGTGGAGGCTGTTGCATAGCCAGATATGGCGTTTACGGTGGTCGTTATGGT 95 Query 120 CTCTCCAAAGCAGATCGAATCATGCTTCGTTTTCGTCCCATTGCTCCTAAACCGGCCAGC 179 ||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||||| Sbjct 96 CTCTCCAAAGCTGATCGAATCATGCTTCGATTCCGTCCCATTGCTCCTAAACCAGCCAGC 155 Query 180 GA---CGGTGGAAGTGTCTCT--C-TCACCGGGAAG-AGCGGCTCCACCACAACTACAAG 232 || ||| |||||||||||| | ||||||| ||| | ||||||| ||||||||||||| Sbjct 156 GACGGCGGCGGAAGTGTCTCTCCCGTCACCGGAAAGTA-CGGCTCCCCCACAACTACAAG 214 Query 233 TGGTGGAAGCTCCGATCTCTCAGGTAAATCTGGGAGAGGAAAGAGAAAGTATCAAAAAGA 292 ||||||||||||||| | || ||||||||||||||||||||||| ||||| || | ||| Sbjct 215 CGGTGGAAGCTCCGATGTTTCCGGTAAATCTGGGAGAGGAAAGAGGAAGTACCAGAGAGA 274 Query 293 TTGTTCCGGTGGGAACTCCCGAAGGTGCAATAAGAAGAAGAGAGATCTAAGTGGAGACAC 352 | ||||||| || ||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 275 TAGTTCCGGCGGTAACTCCCGAAGGTGCAATAAGAAGAAGAGAGATCTCAGTGGAGATGC 334 Query 353 TGCTACTACCACGGCGGTTACATTGTCTCTTTTACCAGAGACGCCTGAGAAACG-AGTTT 411 |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| Sbjct 335 TGCTACTACCACGGCGGTTACATTGTCTCTTTTACCAGAGACGCCTGATAAA-GCAGTTT 393 Query 412 TTCCAGATCTGAATGCTTTTCCGGTGGAGAAGCAGAAGCGAAACGGTCCTTTATGGCTGA 471 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 394 TTCCAGATCTGAATGCTTTTCCGGTAGAGAAACAGAAGCGAAACGGTCCTTTATGGCTGA 453 Query 472 GTTTCAACGGCGGTGGTGAGATTTTAACGCCGTACAAAACGGCGGAGATATCACGAAGGA 531 |||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||| Sbjct 454 GTTTCAACGGCGGTAGTGAGATGTTAACGCCGTACAATTCGGCGGAGATATGTCGAAGGA 513 Query 532 CGGTGGTGGTTTCGTCGTGTGTGACGGTTGAGCGTGTGACTGACGCTTGGATCGACGGTT 591 ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 514 CGGTGGTTGTTTCGTCGTGTGTGACGGTTGAACGTGTGACTGACGCATGGATCGACGGTT 573 Query 592 ATGGATTAGGGGAGACAAATCAGGAGAGGAAGATGAATCTAGTGGAAGACACGTGTCCTG 651 ||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 574 ATGGATTAGGGAAGACAAATGAGGAGAGGAAGATGAATCTTGTGAAAGACACGTGTCCTG 633 Query 652 GTTTTATATCGGACGGTGTAGGGAGAGTCACGTGGACCAATGAGGCGTATAAGAAGATGG 711 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 634 GTTTTATATCGGACGGTGCAGGGAGAGTCACGTGGACCAATGAGGCGTATAAGAAGATGG 693 Query 712 CTAGAGAAGATATTAATATTCCGATGGAGGAAGGTGTACCGGAGGATATTAGTTACGATA 771 |||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| Sbjct 694 CTAGAGAAGATATTAATATTCCGATGGAGGAAGGTGTACCGGAGGAGATGAATTACGATA 753 Query 772 ATTTTCACGTGAACGTACGGTTAGTGATGAAGGAGAGGCCGATGCTAACGTACCCAGCTT 831 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 754 ATTTTCACGTGATCGTACGGTTAGTGATGAAGGAGAGGCCGATGCTAACGTACCCAGCTT 813 Query 832 TCACATGCAGAGTGAGATTACAGTACACGTGTCAAGATCGAGAAAGAGGATCCGTCACGG 891 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 814 TTACATGCAGAGTGAGATTACAGTACACGTGTCAAGATCGAGAAAGAGGTTCCGTCACGG 873 Query 892 TGCCTTGTGACGTGTGGAGAATGGACGGCGGTGGTTTTGCGTGGAGGCTTGACGTTAAGG 951 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 874 TGCCTTGTGACGTGTGGAGAATGGACGGCGGTGGTTTTGCGTGGAGACTTGACGTTAAGG 933 Query 952 CAGCTTTGTGTCT-GTGACGTTCTTTCATTCGCCACCGTTGGATTTACAATGGTGAAAAT 1010 |||||||||| || |||||||||||||| || || || ||||||| |||||||||||||| Sbjct 934 CAGCTTTGTG-CTTGTGACGTTCTTTCAATCTCCGCCATTGGATTCACAATGGTGAAAAT 992 Query 1011 GATGAATGGTCCCGATCGTATC 1032 |||||| ||||||||||||||| Sbjct 993 GATGAACGGTCCCGATCGTATC 1014 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44184460803 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5