BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63370.1
Length=3319
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951139 jgi|Araly1|951139|scaffold_803026.1 2939 0.0
> Ahg951139 jgi|Araly1|951139|scaffold_803026.1
Length=1894
Score = 2939 bits (1591), Expect = 0.0
Identities = 1797/1896 (95%), Gaps = 15/1896 (1%)
Strand=Plus/Plus
Query 412 TTTCTCATTGAGAAGAATACGATGGCAGCAGGGGGTGTTGATGTTTCCAGAAGTTCCGTT 471
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1 TTTCTCATTGAGAAGAATACGATGGCGGCAGGGGGTGTTGATGTCTCCAGAAGTTCTGTT 60
Query 472 GCTGTCAAAAAAGACTACGACTTTTACAGGAATGGTTCTCGTGATGTGTATGTTCGACAG 531
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCCGTCGAAAAAGACTACGACTTTTACAGGAATGGTTCTCGTGATGTGTATGTTCGACAG 120
Query 532 AGTGGTAGAGATGACGAGAGGCGTCAAATCAAAAGGCCTAGTGACCATGATCTCAGGAGG 591
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 AGTGGTAGAGATGCCGAGAGGCGTCAAATCAAACGGCCTAGTGACCATGATCTCAGGAGG 180
Query 592 AATGATGGGCGTCACCGATCACGGTTGGCATATGAGAAAGGGGAACTACGGGAGGAAGCA 651
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 181 AATGATGGGCGTCACCGATCACGGTTGGCTTATGAGAAAGGGGAACTACGAGAGGAAGCG 240
Query 652 GAGGTTCAGAGACCCTCTGAGAAAAGGAGGAAGTTTTCACCCATCGTGTGGAATGC---A 708
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 241 GAGGTTCAGAGACCCTCTGAGAAAAGGAGGAAGTTTTCACCCATCTTGTGGAATGCAAAA 300
Query 709 G-A-A-AAAGTGGGTAGAGCTCCATCTAGGGAGAAGACCAAGTCTCCTTTCCCTGTTCCG 765
| | | ||||||||||||||||| ||| ||||||| || ||||||||||||||| |||||
Sbjct 301 GAAGACAAAGTGGGTAGAGCTCCGTCTGGGGAGAAAACAAAGTCTCCTTTCCCTATTCCG 360
Query 766 ACTACAACTGTGATATCCAATCAGGCTGTTGCTGGTAAGACTACTTCAAACGATCAAGTG 825
|||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||
Sbjct 361 ACTACAACTGTGATATCCAACCAGGCTGTTGCTGGTAAGACTTCTTCAAAGGATCAAGTT 420
Query 826 AATGCCTTGATGTCGCCAGAACCTAGTTATCTTGCTCCAGTGCAGCCTTCAGAAGCCCTG 885
||| || ||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 421 AATTTTTTTATGTCGCCAGAACCTAGTTATCTTGTTCCAGTGCAGCCTTTAGAAGCCATG 480
Query 886 CTGGCTGTGAAACA-TCCTGTTGATGATTTGGAGGAGGGTCAGTTGGAGGAAGAACAGGT 944
||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTGTCTGTGAAACATTCC-GTTGATGATTTGGAGGAGGGTCAGTTGGAGGAAGAACAGGT 539
Query 945 GATGCAGGAGGATGTAAAGGAGGGTCTGTTGGAGGAAGAACAAGTGATGCAGGAACCAAA 1004
||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 540 GATGCAGAAGCATGTAAAAGAGGGTCTGTTGGAGGAAGAACAAGTGATGCAGGAACCATG 599
Query 1005 TATAAAGACATCTAGGTGGGGGACAGGTTTGACTTCCCCAAAGGAGGAGTTAATA--TC- 1061
||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 600 TATTAAGACATCTAGGTGGGGGACGGGTTTGACTTCCCCAAAGGAGGAGTTAATATCTCA 659
Query 1062 TG-T--TAACGTTTCCAAGACTAATAGATGGAACAGGAGCAGTTTGACACCGGAGTGCGA 1118
|| | ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 660 TGCTGATAATGTTTCCAAGACTAGTAGATGGAACAGGAGCAGTTTGACACCGGAGTGCGA 719
Query 1119 GGAAGTAATGGTGTCTGAAGAACAGCAGTGCTATTCGTCTGGATCTGGCAGTGGACATCT 1178
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 720 GGAAGTAATGGTGTCTGAAGAACCGCAGTGCTATTCATCTGGATCTGGCAGTGGACATCG 779
Query 1179 CAGCGTAGAGAAGCTTAGTGCAGATGGAAATTCTGGTCGTGAGTATTATAGTTCTGATCA 1238
|||||||||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 780 CAGCGTAGAGAATCTTAGTGCAGATGAAAATTCTGATCGTGAGTATTGTAGTTCTGATCA 839
Query 1239 TGATGAGTTAGAACATGAAGATCAAGATTCTTTAACTCCGGGAGAGATGAACATGATGTT 1298
||||||||||||| ||||||||| |||||||| ||||| ||||| |||| |||||||| |
Sbjct 840 TGATGAGTTAGAAAATGAAGATCCAGATTCTTCAACTCAGGGAGGGATGGACATGATGCT 899
Query 1299 TGGGAGCAGGTCTGTGAATGAATTTCAGAAGCTAAACAAGATAAATGAAGGAACATATGG 1358
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 TGGGAGCAGGTCTGTGAATGAATTTCAGAAGCTAAACAAGATAAATGAAGGAACGTATGG 959
Query 1359 AATTGTTTACAAAGCAAGGGATGAGAAAACAAAAGAGATTGTTGCGCTCAAAAAGATCAA 1418
|||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 960 AATTGTTTACAAAGCAAGAGATGAGAAAACAAAGGAGATTGTGGCGCTCAAAAAGATCAA 1019
Query 1419 GATGAAGGAAGATAGGTTCGAAGAAGAGTATGGATTCCCTTTGACATCATTGAGGGAAAT 1478
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1020 GATGAAGGAAGATAGGTTCGAAGAAGAGTATGGATTCCCTTTGACATCGTTGAGGGAAAT 1079
Query 1479 TAACATACTTTTGTCATGCAATCACCCTGCGATTGTGAACGTGAAGGAGGTTGTGGTTGG 1538
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TAACATACTTCTGTCATGCAATCACCCTGCGATTGTGAACGTGAAGGAGGTTGTGGTTGG 1139
Query 1539 AGGGAAAAACGATAATGATGTTTATATGGTCATGGAACACTTAGAACACGACCTGAGGGG 1598
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1140 AGGGAAAAACGATAGTGATGTTTATATGGTCATGGAACACTTAGAACATGACCTGAGGGG 1199
Query 1599 AGTAATGGATAGAAGGAAGGAACCTTTTAGCACTAGCGAAGTCAAGTGCTTGATGATGCA 1658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGTAATGGATAGAAGGAAGGAACCTTTTAGCACTAGCGAAGTCAAGTGCTTGATGATGCA 1259
Query 1659 GCTGTTGGATGGTTTGAAATACCTCCACACAAATTGGATTATCCACAGGGATCTGAAGCC 1718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GCTGTTGGATGGTTTGAAATACCTCCACACAAATTGGATTATCCACAGGGATCTGAAGCC 1319
Query 1719 ATCTAATCTTCTGATGAACAATTGTGGGGAGTTAAAAATATGTGATTTTGGGATGGCGCG 1778
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1320 ATCTAATCTTCTAATGAACAATTGTGGGGAGTTAAAAATATGTGATTTTGGGATGGCACG 1379
Query 1779 CCAGTATGGGAGCCCTATCAAGCCTTACACCCAGATGGTTATTACCCAGTGGTACAGGCC 1838
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 1380 CCAGTATGGGAGCCCTATCAAGCCGTATACCCAGATGGTTATTACTCAGTGGTACAGGCC 1439
Query 1839 ACCTGAACTTCTTCTAGGAGCAAAAGAGTACTCTACAGCAGTTGATATGTGGTCAGTGGG 1898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1440 ACCTGAACTTCTTCTAGGAGCAAAAGAGTACTCTACAGCAGTTGATATGTGGTCAGTTGG 1499
Query 1899 TTGCATTATGGCTGAACTGTTGTCTCAAAAGCCTTTGTTCCCGGGTAAGAGTGAGCTTGA 1958
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1500 TTGCATTATGGCTGAACTGTTGTCTCAAAAGCCTTTGTTCCCGGGCAAGAGTGAGCTTGA 1559
Query 1959 CCAACTTCAGAAGATCTTTGCGGTCCTTGGAACACCAAACGAAGCAATATGGCCTGGGTT 2018
||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||| ||
Sbjct 1560 CCAACTTCAAAAGATCTTTGCGGTCCTTGGAACACCAAACGAGGCAGTCTGGCCTGGATT 1619
Query 2019 CTCATCATTTCCGAATGCTAAAGCCAAGTTTCCTACACAGCCTTACAATATGTTACGTAA 2078
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1620 TTCATCATTCCCGAATGCGAAAGCCAAGTTTCCTACACAACCTTACAATATGTTACGTAA 1679
Query 2079 GAAGTTTCCAGCTATTTCATTTGTAGGTGGTCAAATTCTTTCTGAACGTGGATTTGATTT 2138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GAAGTTTCCAGCTATTTCATTTGTAGGTGGTCAAATTCTTTCTGAACGTGGATTTGATTT 1739
Query 2139 GCTGAACAGTCTACTAACTTTGGACCCTGAGAAACGTCTAACAGTGGAAGATGCTCTCAA 2198
||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1740 GCTGAACAGTCTATTAACTTTGGATCCTGAGAAACGTCTAACAGTGGAAGAGGCTCTCAA 1799
Query 2199 CCATGGTTGGTTCCATGAAGTCCCGTTACCAAAATCCAAAGATTTCATGCCGACATATCC 2258
||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 1800 CCATGGTTGGTTCCATGAAGTCCCGCTACCGAAATCCAAAGATTTCATGCCAACATATCC 1859
Query 2259 TCCAAAGCGGTAACTGAGAAAAAACGTGCTATCATT 2294
||||||||||||||||| ||||||| ||| ||||||
Sbjct 1860 TCCAAAGCGGTAACTGA-AAAAAACCTGCCATCATT 1894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125285530316
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5