BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63390.1 Length=1680 Score E Sequences producing significant alignments: (Bits) Value Ahg332561 jgi|Araly1|332561|fgenesh1_pm.C_scaffold_8001904 2682 0.0 Ahg343087 jgi|Araly1|343087|fgenesh1_pg.C_scaffold_3002850 326 4e-88 > Ahg332561 jgi|Araly1|332561|fgenesh1_pm.C_scaffold_8001904 Length=1680 Score = 2682 bits (1452), Expect = 0.0 Identities = 1606/1682 (95%), Gaps = 4/1682 (0%) Strand=Plus/Plus Query 1 ATGGCGAAATCGATGAGAACTATCAAAAATCCATTCTTTACTTCGCATCCGCCATCTCCA 60 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 ATGGCGAAGTCGATGAGAACTATCAAAAATCCATTCTTCACTTCGCATCCGCCATCTCCT 60 Query 61 TTCTTCCATCTCTCTCTCCTCTTCTTCACTCCCCTGAAGAAATCAAGTCCCCGATACCTA 120 ||||||||||||||||| ||||||||| |||| ||||||||||| ||||||||||||||| Sbjct 61 TTCTTCCATCTCTCTCTGCTCTTCTTCTCTCCACTGAAGAAATCCAGTCCCCGATACCTA 120 Query 121 AACCACCATCACCAAACTCGATGCCCACCTCCACAGtttttccttcttctcatctctctt 180 ||||||||||||||||||||||||||||||||||||| | |||||||||||| || ||| Sbjct 121 AACCACCATCACCAAACTCGATGCCCACCTCCACAGTATCCCCTTCTTCTCATTTCACTT 180 Query 181 tctctcgttttctcgggaatttcatttctcacattttctttAGACACTGGATCGTCAACT 240 ||||||||||||||||||||||| |||||||||||||||||| || ||| |||||||||| Sbjct 181 TCTCTCGTTTTCTCGGGAATTTCGTTTCTCACATTTTCTTTAAACCCTGAATCGTCAACT 240 Query 241 TGCGTCTCCACATCTTCCG-CTTCCTCTCTCAAATTCTTCATCTCCGATGTCGATCACCG 299 |||||||||||||||| || ||||||||||||||||||| |||||||| ||||| ||||| Sbjct 241 TGCGTCTCCACATCTT-CGACTTCCTCTCTCAAATTCTTAATCTCCGACGTCGACCACCG 299 Query 300 TCAGATCTTAACCTCCCTTGCTGTATCCGGAGCTTCCACGTTGTTTCCGTTACCGGCGAG 359 |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||| Sbjct 300 TCAGATCTTAACCTCCCTCGCTGTCTCCGGAGCTTCCACATTGTTTCCGTTACCGACGAG 359 Query 360 AGGAGGACATTCCGGGAATATGACGGAGGAAGAGAAAGAGTTTTGGAAACAACCCAATGG 419 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 360 AGGAGGACATTCCGGGAATATGACGGAGGAAGAGAGAGAGTTTTGGAAACAACCCAATGG 419 Query 420 TGAAGGATACAAGCCTTGTTTGGATTTTAGTTTGGAGTACAAGAAGAAATCAGCTAGTGT 479 |||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| || Sbjct 420 TGAAGGATACAAGCCTTGTTTGGATTTTAGTTTGGATTACAGGAAGAAATCAGTTAGGGT 479 Query 480 TTCTAAAGAGAAGAAACGATTCCTTGTTGTTGTTGTCTCTGGTGGACTTAATCAACAACG 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TTCTAAAGAGAAGAAACGATTCCTTGTTGTTGTTGTCTCTGGTGGACTTAATCAACAACG 539 Query 540 GAATCAAATCGTTGATGCTGTTGTAATCGCTATGATTCTTGAAGCTGCTCTTGTTGTTCC 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GAATCAAATCGTTGATGCTGTTGTAATCGCTATGATTCTTGAAGCTGCTCTTGTTGTTCC 599 Query 600 TGTTTTGCAAGTGAATCGAGTCTGGGGAGACGAAAGTGAATTCTCAGATC-TTTTCGATG 658 ||||||||| ||||||||||||||||||||||||||||| ||||| || | ||||||||| Sbjct 600 TGTTTTGCAGGTGAATCGAGTCTGGGGAGACGAAAGTGAGTTCTCTGA-CATTTTCGATG 658 Query 659 TAGAGCATTTCAAGAAAACGCTGAGATCTGATGTTCGTATCGTTTCTTCTCTACCGTCAA 718 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 659 TAGAGCATTTCAAGAAAACGCTGAGATCTGATGTGCGTATCGTTTCTTCTCTACCGTCAA 718 Query 719 CGCATCTTATGTCTAGACAAACAATTGAGAATCAGATTCCTTGGGATGTTTCTCCGGTTT 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 CGCATCTTATGTCTAGACAAACAATTGAGAATCAGATTCCTTGGGATGTTTCTCCGGTTT 778 Query 779 GGATCCGTGCTAAATACTTCAAGCAGTTGAATGAGGAAGGACTTTTGGTGTTGAAAGGAT 838 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 779 GGATCCGTGCTAAATACTTCAAACAGTTGAATGAGGAAGGACTTTTGGTGTTGAAAGGAT 838 Query 839 TGGACTCAAAGTTAGCCAAGAATCTACCGCCGGATCTGCAGAAACTTCGATGCAAGGTTG 898 | ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| Sbjct 839 TAGACTCAAAGTTAGCCAAGAATCTCCCGCCGGATCTTCAGAAGCTTCGATGCAAGGTTG 898 Query 899 CTTTCCATGCACTGAGATTCGCGGCACCAATTGAGAATCTCGGGAACAAACTCACGAGAA 958 |||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| Sbjct 899 CTTTCCATGCACTGAGATTCGCAGCACCGATTGAGAATCTCGGGAACAAACTCGCGAGAA 958 Query 959 GAATGTGGATAGAAGGTCCATATATTGCTCTCCATTTAAGGCTAGAGAAAGATGTTTGGG 1018 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 959 GAATGTGGATAGAAGGTCCATATATAGCTCTCCATTTAAGGCTAGAGAAAGATGTATGGG 1018 Query 1019 TAAGAACCGGTTGTCTCACTGGATTAGGCTCAGAATTCGATCGGATCATAGCAGAAACCA 1078 ||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 1019 TAAGAACTGGTTGTCTCACTGGATTAGGCTCAGAATTTGATAGGATCATAGCAGAAACCA 1078 Query 1079 GAACGTCTCAGCCTCGATACCTCACTGGTAGACTAAACTTGACCTATACAGAGCGTAGAC 1138 | || ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| Sbjct 1079 GGACATCTCAGCCTCGATACCTTACTGGTAGACTAAACATGAGCTATACAGAGCGTAGAC 1138 Query 1139 TTGCTGGTTTTTGTCCTCTCAATGTATATGAGATTGCAAGGTTGTTGAAGGCTTTGGGAG 1198 |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 1139 TTGCTGGTTTTTGTCCTCTCAATGCATATGAGATTGCAAGGTTGTTGAAGGCCTTGGGAG 1198 Query 1199 CACCTAGTAATGCGTCGATATATATTGCAGGAGGTGAACCATTTGGTGGCTCACGAGCAT 1258 ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 1199 CACCTAGGAATGCATCGATATATATTGCAGGAGGTGAGCCATTTGGTGGCTCACGAACAT 1258 Query 1259 TAGAGCCTCTCGCTAAAGAGTTCTCTAATTTGGTGACAAAGGAGACATTGGCTCATAAAG 1318 ||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 1259 TAGAGCCTCTCTCTAAAGAGTTCTCTAATTTGGTGACAAAGGGGACACTGGCTCATAAAG 1318 Query 1319 GCGAGCTCTTGCCTTACACCAATAGATCTTCAGCTTTAGCAGCTATTGACTACATTGTAT 1378 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1319 GCGAGCTCTTGCCTTACACCAATAGATCTTCAGCTTTAGCTGCTATTGACTACATTGTAT 1378 Query 1379 CACTTAGCAGCGATGTTTTTATTCCTTCCCATGGTGGAAACATGGCAAAAGCTATGCAGG 1438 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1379 CACTTAGCAGCGATGTTTTTCTTCCTTCCCATGGTGGAAACATGGCAAAAGCTATGCAGG 1438 Query 1439 GAAATAGAGCTTATGTAGGACACAGGAAGTTTATAATGCCTAATAAGAGAGCGATGCTTC 1498 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1439 GAAACAGAGCTTATGTAGGACACAGGAAGTTTATAATGCCTAATAAGAGAGCAATGCTTC 1498 Query 1499 CTTTAATGGAGAATTCTTCTGTTTCAGATGCCGAGCTCAGTTTTCTAACTCGGAAGCTTC 1558 ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| Sbjct 1499 CTTTAATGGAGAATTCTTCAGTTTCAGATGCCGAGCTCAGTTCTGTAACTCGGAAGCTTC 1558 Query 1559 ACCGTAAGTCCCAAGGCTATCCTGAGTCACGGAGAGGGCGGAGAGATCGTGACGTGATAG 1618 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 ACCGTAAGTCCCAAGGCCATCCTGAGTCACGGAGAGGGCGGAGAGATCGTGACGTGATAG 1618 Query 1619 CTTATCCTGTCCCGGAGTGTATGTGTCGACATAGAAAACACAGGTCTGTAGGTTTCTTCT 1678 ||||||| ||||||||||||||||| || ||| |||||||||||||||||||| |||||| Sbjct 1619 CTTATCCCGTCCCGGAGTGTATGTGCCGCCATGGAAAACACAGGTCTGTAGGTCTCTTCT 1678 Query 1679 AG 1680 || Sbjct 1679 AG 1680 > Ahg343087 jgi|Araly1|343087|fgenesh1_pg.C_scaffold_3002850 Length=1026 Score = 326 bits (176), Expect = 4e-88 Identities = 198/209 (95%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 1229 GAGGTGAACCATTTGGTGGCTCACGAGCATTAGAGCCTCTCGCTAAAGAGTTCTCTAATT 1288 ||||||| | ||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 146 GAGGTGAGCTGTTTGGTGGCTCACGAGCATTAGAGCCTCTAGCGAAAGAGTTCTCTAATT 205 Query 1289 TGGTGACAAAGGAGACATTGGCTCATAAAGGCGAGCTCTTGCCTTACACCAATAGATCTT 1348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 206 TGGTGACAAAGGAGACATTGGCTCATAAAGGCGAGCTCTTGCCTTACACCAATAGATCCT 265 Query 1349 CAGCTTTAGCAGCTATTGACTACATTGTATCACTTAGCAGCGATGTTTTTATTCCTTCCC 1408 ||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| | Sbjct 266 CAGCTTTAGCAGCTATTGACTACATCGTATCACTTAGCAGCGACGTTTTTCTTCCTTCTC 325 Query 1409 ATGGTGGAAACATGGCAAAAGCTATGCAG 1437 ||||||| ||||||||||||||||||||| Sbjct 326 ATGGTGGTAACATGGCAAAAGCTATGCAG 354 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63001265230 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5