BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63390.1
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332561 jgi|Araly1|332561|fgenesh1_pm.C_scaffold_8001904 2682 0.0
Ahg343087 jgi|Araly1|343087|fgenesh1_pg.C_scaffold_3002850 326 4e-88
> Ahg332561 jgi|Araly1|332561|fgenesh1_pm.C_scaffold_8001904
Length=1680
Score = 2682 bits (1452), Expect = 0.0
Identities = 1606/1682 (95%), Gaps = 4/1682 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAAATCGATGAGAACTATCAAAAATCCATTCTTTACTTCGCATCCGCCATCTCCA 60
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGCGAAGTCGATGAGAACTATCAAAAATCCATTCTTCACTTCGCATCCGCCATCTCCT 60
Query 61 TTCTTCCATCTCTCTCTCCTCTTCTTCACTCCCCTGAAGAAATCAAGTCCCCGATACCTA 120
||||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||
Sbjct 61 TTCTTCCATCTCTCTCTGCTCTTCTTCTCTCCACTGAAGAAATCCAGTCCCCGATACCTA 120
Query 121 AACCACCATCACCAAACTCGATGCCCACCTCCACAGtttttccttcttctcatctctctt 180
||||||||||||||||||||||||||||||||||||| | |||||||||||| || |||
Sbjct 121 AACCACCATCACCAAACTCGATGCCCACCTCCACAGTATCCCCTTCTTCTCATTTCACTT 180
Query 181 tctctcgttttctcgggaatttcatttctcacattttctttAGACACTGGATCGTCAACT 240
||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||||||
Sbjct 181 TCTCTCGTTTTCTCGGGAATTTCGTTTCTCACATTTTCTTTAAACCCTGAATCGTCAACT 240
Query 241 TGCGTCTCCACATCTTCCG-CTTCCTCTCTCAAATTCTTCATCTCCGATGTCGATCACCG 299
|||||||||||||||| || ||||||||||||||||||| |||||||| ||||| |||||
Sbjct 241 TGCGTCTCCACATCTT-CGACTTCCTCTCTCAAATTCTTAATCTCCGACGTCGACCACCG 299
Query 300 TCAGATCTTAACCTCCCTTGCTGTATCCGGAGCTTCCACGTTGTTTCCGTTACCGGCGAG 359
|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 300 TCAGATCTTAACCTCCCTCGCTGTCTCCGGAGCTTCCACATTGTTTCCGTTACCGACGAG 359
Query 360 AGGAGGACATTCCGGGAATATGACGGAGGAAGAGAAAGAGTTTTGGAAACAACCCAATGG 419
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 AGGAGGACATTCCGGGAATATGACGGAGGAAGAGAGAGAGTTTTGGAAACAACCCAATGG 419
Query 420 TGAAGGATACAAGCCTTGTTTGGATTTTAGTTTGGAGTACAAGAAGAAATCAGCTAGTGT 479
|||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| ||
Sbjct 420 TGAAGGATACAAGCCTTGTTTGGATTTTAGTTTGGATTACAGGAAGAAATCAGTTAGGGT 479
Query 480 TTCTAAAGAGAAGAAACGATTCCTTGTTGTTGTTGTCTCTGGTGGACTTAATCAACAACG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTCTAAAGAGAAGAAACGATTCCTTGTTGTTGTTGTCTCTGGTGGACTTAATCAACAACG 539
Query 540 GAATCAAATCGTTGATGCTGTTGTAATCGCTATGATTCTTGAAGCTGCTCTTGTTGTTCC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAATCAAATCGTTGATGCTGTTGTAATCGCTATGATTCTTGAAGCTGCTCTTGTTGTTCC 599
Query 600 TGTTTTGCAAGTGAATCGAGTCTGGGGAGACGAAAGTGAATTCTCAGATC-TTTTCGATG 658
||||||||| ||||||||||||||||||||||||||||| ||||| || | |||||||||
Sbjct 600 TGTTTTGCAGGTGAATCGAGTCTGGGGAGACGAAAGTGAGTTCTCTGA-CATTTTCGATG 658
Query 659 TAGAGCATTTCAAGAAAACGCTGAGATCTGATGTTCGTATCGTTTCTTCTCTACCGTCAA 718
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 659 TAGAGCATTTCAAGAAAACGCTGAGATCTGATGTGCGTATCGTTTCTTCTCTACCGTCAA 718
Query 719 CGCATCTTATGTCTAGACAAACAATTGAGAATCAGATTCCTTGGGATGTTTCTCCGGTTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CGCATCTTATGTCTAGACAAACAATTGAGAATCAGATTCCTTGGGATGTTTCTCCGGTTT 778
Query 779 GGATCCGTGCTAAATACTTCAAGCAGTTGAATGAGGAAGGACTTTTGGTGTTGAAAGGAT 838
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 GGATCCGTGCTAAATACTTCAAACAGTTGAATGAGGAAGGACTTTTGGTGTTGAAAGGAT 838
Query 839 TGGACTCAAAGTTAGCCAAGAATCTACCGCCGGATCTGCAGAAACTTCGATGCAAGGTTG 898
| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 839 TAGACTCAAAGTTAGCCAAGAATCTCCCGCCGGATCTTCAGAAGCTTCGATGCAAGGTTG 898
Query 899 CTTTCCATGCACTGAGATTCGCGGCACCAATTGAGAATCTCGGGAACAAACTCACGAGAA 958
|||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 899 CTTTCCATGCACTGAGATTCGCAGCACCGATTGAGAATCTCGGGAACAAACTCGCGAGAA 958
Query 959 GAATGTGGATAGAAGGTCCATATATTGCTCTCCATTTAAGGCTAGAGAAAGATGTTTGGG 1018
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 959 GAATGTGGATAGAAGGTCCATATATAGCTCTCCATTTAAGGCTAGAGAAAGATGTATGGG 1018
Query 1019 TAAGAACCGGTTGTCTCACTGGATTAGGCTCAGAATTCGATCGGATCATAGCAGAAACCA 1078
||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1019 TAAGAACTGGTTGTCTCACTGGATTAGGCTCAGAATTTGATAGGATCATAGCAGAAACCA 1078
Query 1079 GAACGTCTCAGCCTCGATACCTCACTGGTAGACTAAACTTGACCTATACAGAGCGTAGAC 1138
| || ||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 1079 GGACATCTCAGCCTCGATACCTTACTGGTAGACTAAACATGAGCTATACAGAGCGTAGAC 1138
Query 1139 TTGCTGGTTTTTGTCCTCTCAATGTATATGAGATTGCAAGGTTGTTGAAGGCTTTGGGAG 1198
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1139 TTGCTGGTTTTTGTCCTCTCAATGCATATGAGATTGCAAGGTTGTTGAAGGCCTTGGGAG 1198
Query 1199 CACCTAGTAATGCGTCGATATATATTGCAGGAGGTGAACCATTTGGTGGCTCACGAGCAT 1258
||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1199 CACCTAGGAATGCATCGATATATATTGCAGGAGGTGAGCCATTTGGTGGCTCACGAACAT 1258
Query 1259 TAGAGCCTCTCGCTAAAGAGTTCTCTAATTTGGTGACAAAGGAGACATTGGCTCATAAAG 1318
||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1259 TAGAGCCTCTCTCTAAAGAGTTCTCTAATTTGGTGACAAAGGGGACACTGGCTCATAAAG 1318
Query 1319 GCGAGCTCTTGCCTTACACCAATAGATCTTCAGCTTTAGCAGCTATTGACTACATTGTAT 1378
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1319 GCGAGCTCTTGCCTTACACCAATAGATCTTCAGCTTTAGCTGCTATTGACTACATTGTAT 1378
Query 1379 CACTTAGCAGCGATGTTTTTATTCCTTCCCATGGTGGAAACATGGCAAAAGCTATGCAGG 1438
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CACTTAGCAGCGATGTTTTTCTTCCTTCCCATGGTGGAAACATGGCAAAAGCTATGCAGG 1438
Query 1439 GAAATAGAGCTTATGTAGGACACAGGAAGTTTATAATGCCTAATAAGAGAGCGATGCTTC 1498
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1439 GAAACAGAGCTTATGTAGGACACAGGAAGTTTATAATGCCTAATAAGAGAGCAATGCTTC 1498
Query 1499 CTTTAATGGAGAATTCTTCTGTTTCAGATGCCGAGCTCAGTTTTCTAACTCGGAAGCTTC 1558
||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||
Sbjct 1499 CTTTAATGGAGAATTCTTCAGTTTCAGATGCCGAGCTCAGTTCTGTAACTCGGAAGCTTC 1558
Query 1559 ACCGTAAGTCCCAAGGCTATCCTGAGTCACGGAGAGGGCGGAGAGATCGTGACGTGATAG 1618
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 ACCGTAAGTCCCAAGGCCATCCTGAGTCACGGAGAGGGCGGAGAGATCGTGACGTGATAG 1618
Query 1619 CTTATCCTGTCCCGGAGTGTATGTGTCGACATAGAAAACACAGGTCTGTAGGTTTCTTCT 1678
||||||| ||||||||||||||||| || ||| |||||||||||||||||||| ||||||
Sbjct 1619 CTTATCCCGTCCCGGAGTGTATGTGCCGCCATGGAAAACACAGGTCTGTAGGTCTCTTCT 1678
Query 1679 AG 1680
||
Sbjct 1679 AG 1680
> Ahg343087 jgi|Araly1|343087|fgenesh1_pg.C_scaffold_3002850
Length=1026
Score = 326 bits (176), Expect = 4e-88
Identities = 198/209 (95%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 1229 GAGGTGAACCATTTGGTGGCTCACGAGCATTAGAGCCTCTCGCTAAAGAGTTCTCTAATT 1288
||||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 146 GAGGTGAGCTGTTTGGTGGCTCACGAGCATTAGAGCCTCTAGCGAAAGAGTTCTCTAATT 205
Query 1289 TGGTGACAAAGGAGACATTGGCTCATAAAGGCGAGCTCTTGCCTTACACCAATAGATCTT 1348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 206 TGGTGACAAAGGAGACATTGGCTCATAAAGGCGAGCTCTTGCCTTACACCAATAGATCCT 265
Query 1349 CAGCTTTAGCAGCTATTGACTACATTGTATCACTTAGCAGCGATGTTTTTATTCCTTCCC 1408
||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| |
Sbjct 266 CAGCTTTAGCAGCTATTGACTACATCGTATCACTTAGCAGCGACGTTTTTCTTCCTTCTC 325
Query 1409 ATGGTGGAAACATGGCAAAAGCTATGCAG 1437
||||||| |||||||||||||||||||||
Sbjct 326 ATGGTGGTAACATGGCAAAAGCTATGCAG 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001265230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5