BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63400.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496525 jgi|Araly1|496525|fgenesh2_kg.8__2341__AT5G63400.1 1688 0.0
> Ahg496525 jgi|Araly1|496525|fgenesh2_kg.8__2341__AT5G63400.1
Length=1032
Score = 1688 bits (914), Expect = 0.0
Identities = 978/1009 (97%), Gaps = 3/1009 (0%)
Strand=Plus/Plus
Query 52 CGAGAAAAACGAAGTTTTCTGAGCTAAACTAGATCAGCTATGGCGACCGGTGGTGCTGCG 111
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 CGAGAAAAACGAAGATTTCTGAGCGAAACTAGATCAGCTATGGCGACCGGTGGTGCTGCG 60
Query 112 GCGGATTTGGAAGATGTTCAGACGGTGGATCTCATGTCGGAGCTCCTCCGCCGCCTCAAG 171
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCGGATTTGGAAGATGTTCAGACGGTGGATCTCATGTCGGAGCTCCTCCGCCGCCTCAAA 120
Query 172 TGTTCTCAGAAGCCCGACAAACGCCTCATCTTCATTGGACCTCCAGGGTCAGGGAAAGGT 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTTCTCAGAAGCCCGACAAACGCCTCATCTTCATTGGACCTCCAGGGTCAGGGAAAGGT 180
Query 232 ACTCAATCTCCAGTAGTGAAGGATGAGTATTGCTTGTGTCACTTATCCACTGGAGACATG 291
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACACAATCTCCAGTAGTGAAGGATGAGTATTGCTTGTGTCACTTATCCACTGGAGACATG 240
Query 292 TTAAGAGCTGCTGTTGCTTCTAAGACCCCTCTTGGTGTCAAGGCTAAAGAAGCTATGGAA 351
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 241 TTAAGAGCTGCTGTTGCTTCTAAAACCCCTCTTGGTGTGAAGGCTAAAGAAGCTATGGAA 300
Query 352 AAAGGAGAGCTCGTCTCTGATGATTTGGTTGTTGGTATAATTGATGAAGCCATGAACAAG 411
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAAGGAGAGCTTGTCTCTGATGATTTGGTTGTTGGTATAATTGATGAAGCCATGAACAAG 360
Query 412 CCAAAATGTCAAAAAGGATTTATCCTTGATGGGTTCCCCAGGACTGTTACTCAGGCAGAG 471
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCAAAATGTCAAAAAGGATTCATCCTTGATGGGTTCCCCAGGACTGTTACTCAGGCAGAG 420
Query 472 AAGCTCGATGAGATGCTTAAGAGGCGAGGAACTGAAATTGACAAAGTTCTCAACTTTGCT 531
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 AAGCTCGATGAGATGCTTAAGAGGCGAGGAACTGAAATCGACAAAGTTCTCAACTTTGCT 480
Query 532 ATTGATGACGCAATCTTGGAGGAAAGAATAACCGGGCGATGGATCCACCCATCGAGTGGC 591
||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 481 ATTGATGACTCAATCTTGGAGGAAAGAATAACTGGGCGATGGATCCACCCATCAAGTGGC 540
Query 592 AGGAGTTACCACACCAAATTTGCTCCTCCCAAAACCCCTGGAGTTGATGATATTACTGGA 651
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 541 AGGAGTTACCACACCAAATTTGCGCCTCCCAAAACCCCTGGGGTTGATGATATTACCGGA 600
Query 652 GAGCCTCTGATCCAACGTAAAGATGATAACGCTGATGTTCTAAAGTCGAGGCTTGCAGCT 711
||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 601 GAGCCTCTGATCCAACGCAAAGATGATAACGCTGACGTTCTAAGGTCGAGGCTTGCAGCT 660
Query 712 TTCCACAGTCAAACTCAACCGGTGATTGATTACTACGCAAAGAAGGCCGTTCTCACAAAC 771
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTCCACAGTCAAACTGAACCGGTGATTGATTACTACGCAAAGAAGGCCGTTCTCACAAAC 720
Query 772 ATCCAGGCCGAGAAGGCTCCCCAAGAAGTTACATCAGAGGTTAAAAAAGCATTGTCATGA 831
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATCCATGCCGAGAAGGCTCCCCAAGAAGTTACATCAGAGGTTAAAAAAGCATTGTCATGA 780
Query 832 TCAAAGACTCCTCAAGCAAATCATCTCCTCTGGTTAGAATCCATTCTTTTCCTTACTACA 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCAAAGACTCCTCAAGCAAATCATCTCCTCTGGTTAGAATCCATTCTTTTCCTTACTACA 840
Query 892 AGAGAGAGACACATCTATATAATCCACTCATCTGCGGAATGACAGTTTTTTCTTTTAGTC 951
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGAGAGAGACACATCTATATA-TCCACTCATCTGCGGAATGACAGTTTTTTCTTTTAGTC 899
Query 952 CTTGCGCTTTTCCTTCTTCGACTAATATTCAAAATATGGAGAAGAGTTTTT-ACTCCTGA 1010
|||||||||| |||| ||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct 900 CTTGCGCTTTACCTT-TTCGACTAATATTCAAAATCTGGAGAAGAATTTTTTACTCCTGG 958
Query 1011 ATATTATCTACTGTCGCAGTCTCTTTACCAAATAAGTAACTTGTCTCAT 1059
|||||||||| ||||||||||| ||||| |||||||||| |||||||||
Sbjct 959 ATATTATCTATTGTCGCAGTCTTTTTACAAAATAAGTAATTTGTCTCAT 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5