BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63410.1
Length=2492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496527 jgi|Araly1|496527|fgenesh2_kg.8__2343__AT5G63410.1 3729 0.0
> Ahg496527 jgi|Araly1|496527|fgenesh2_kg.8__2343__AT5G63410.1
Length=2325
Score = 3729 bits (2019), Expect = 0.0
Identities = 2229/2332 (96%), Gaps = 8/2332 (0%)
Strand=Plus/Plus
Query 1 ACCTATTCTCACTAACAAACTCTGAACAAACCaaaaaaaaCtcttcttttttctatcttt 60
|||||||||||||||||||||||||||||||||||||||| | ||||||| || |||||
Sbjct 1 ACCTATTCTCACTAACAAACTCTGAACAAACCAAAAAAAA-AC-TCTTTTTCCTCTCTTT 58
Query 61 cacgcgttgaagattcttgattttctttcttctccttccttACACGACCACTGATATGTG 120
||||||||||||||||||| ||||||||| | | | |||||||||| |||||||||||||
Sbjct 59 CACGCGTTGAAGATTCTTGCTTTTCTTTC-T-T-C-TCCTTACACGGCCACTGATATGTG 114
Query 121 TCGGTGACTGAAACCATCTGTTCTCTTTTGCCTCTGATTTATCGATATGTTTTAAAGAAA 180
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 115 TCGGTGACTGAAAGAATCTGCTCTCTTTTGCCTCTGATTTATCGATATGTTTTAAAGAAA 174
Query 181 AACGGTGTTTGAAACTTTTGTAATTT-AAGGTTCATCAAATACTCAGATCTTGTCTGAGA 239
|| ||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 175 AA-AGTGTTTGCAACTTTTGAAATTTGCAGGTCCATCAAATACTCAGATCTTGTCTGAGA 233
Query 240 AATTAAGCTGAAATCTGATAAATGGGTTTGTTTAAATTCATCTTCTTGTTATCTCTTCTA 299
||| ||| ||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct 234 AATCAAGTTGAAATCTGATAAATGGGTTTCTTCAAATACATCTTCTTGTTATCTCTTCTA 293
Query 300 TGGAGTTTCTACAGTTTAGGCTCATCTCAGCTACAAGCTTCACAAGCACAAGTTCTTCTT 359
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 294 TGGAGTTTCTACAGTTTAGGCTCGTCTCAGCTACAAGCTTCACAAGCACAGGTTCTTCTT 353
Query 360 CAGCTGAAAAAACACTTAGAATATCCACAACAGCTAGAATCTTGGTATGATCACAGAACC 419
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 354 CAGCTGAAAAAACACTTAGAATACCCACAACAGCTAGAATCTTGGTATGATCACAGGACC 413
Query 420 AATTTCTGCTACTTACAAGCAACACCATCGATGAACATCACTTGTTTCTCTAATTCAGTC 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AATTTCTGCTATTTACAAGCAACACCATCGATGAACATCACTTGTTTCTCTAATTCAGTC 473
Query 480 TCAGAGCTAAACATCTTCGGTGATAAGTCATCAGAAAAAGCCAAAAGCTTTGATGGTTTT 539
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct 474 TCAGAGCTAAACATCTTCGGTGATAAATCATCGGAAAAGGCCAAAAGCTTTGAGGGTTTT 533
Query 540 GCTATCTCTAATGTTACTTTATCTGATGGATTCTCCATTGAATCATTTGTCACTACACTG 599
||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||
Sbjct 534 GCTATCTCTAATGTTACTTTATCTGATAGATTCTCTATTGAATCATTTTTCACTACACTC 593
Query 600 TCAAGGCTAAAATCTCTTAGGGTTCTTACTCTGGCTTCTCTAGGGATTTGGGGTCGTCTC 659
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 594 TCAAGGCTAAAATCTCTTAGGGTTCTTACTCTGTCCTCTCTAGGGATTTGGGGTCATCTC 653
Query 660 CCTGAGAAACTTCATCGTTTATCTTCACTTGAGTATTTGGATTTGAGCAATAACTTTCTG 719
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CCTGAGAAGCTTCATCGTTTATCTTCACTTGAGTATTTGGATTTGAGCAATAACTTTCTG 713
Query 720 TTTGGTTCAGTACCACCTAAGTTGTCTACAATGGTAAAGCTTGAAACTTTCAGATTTGAT 779
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TTTGGATCAGTACCACCTAAGTTGTCTACAATGGTAAAGCTTGAAACTTTCAGATTTGAT 773
Query 780 CATAACTTCTTCAATGGCACATTACCTAGCTGGTTTGATTCGTATTGGTATCTCAAAGTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CATAACTTCTTCAATGGCACATTACCTAGCTGGTTTGATTCGTATTGGTATCTCAAAGTT 833
Query 840 CTTAGCTTTAAAAGTAATAAGCTATCAGGAGAGCTACATTCTTCATTACTCTCGTTGTCA 899
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CTTAGCTTTAAGAGTAATAAGCTATCAGGAGAGCTACATTCTTCATTACTCTCGTTGTCG 893
Query 900 ACAATCGAGTATATCGATTTGAGAGCGAATTCTCTGAGTGGTTCACTTCCGGATGATCTG 959
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 894 ACAATCGAGTATATCGATTTGAGGGCGAATTCTCTGAGTGGTTCACTTCCGGAGGATCTG 953
Query 960 AAATGTGGAAGCAAACTCTGGTTTATCGACATTTCCGACAATAAGTTAACCGGAAAACTT 1019
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 954 AAATGTGGAAGCAAACTCTGGTTTATAGACATTTCCGACAATAAGTTAACCGGAAAACTA 1013
Query 1020 CCTCGTTGCTTAAGCAGCAAGCAAGATATTGCGTTGAGATTCAATGGAAACTGTTTATCT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CCTCGTTGCTTAAGCAGCAAGCAAGATATTGCGTTGAGATTCAATGGAAACTGTTTATCT 1073
Query 1080 CTAGAGAAACAGCAACATCCAGAATCTTTTTGTGTTAAAGAAGTTCGCGCTGCGGCTAAA 1139
||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 1074 CTAGAGAAACAGCAACATCCAGAATCTTTTTGTGTTAAAGAAGCTCAAGCTGAGGCTAAA 1133
Query 1140 GCTGAAGCAAAAGCAGAAGCAGAGGCTGCAAATGAATCAGGAAAAAGAAAATGGAAGAAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GCTGAAGCAAAAGCAGAAGCAGAGGCTGCAAATGAATCAGGAAAAAGAAAATGGAAGAAA 1193
Query 1200 GGAGCTTTAATCGGCTTAATCGTTGGTATATCAATGTCGGTATTGGTTTTAGTCTGCTGT 1259
||||||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1194 GGAGCTTTAATTGGTTTAATCGTTGGTATATCAATGGCGGTATTGGTTTTAATCTGCTGT 1253
Query 1260 GTATTTATCTTGCTCAGAAGAAAAGGAGTAACAAAGAAGCATGTCCACCATAATACTGTC 1319
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1254 GTATTCATCTTGCTCAGAAGAAAAGGAGTAACAAAGAAGCATGTGCACCATAATACAGTC 1313
Query 1320 CAAGATAATCATCCAACTACTGGATTTTCTTCCGAGATACTCTCAAACGCAAGGTACATT 1379
||||||||||||||| | ||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1314 CAAGATAATCATCCATCAACTGGATTTTCCTCTGAGATACTCTCAAATGCAAGGTACATT 1373
Query 1380 TCTGAAACATCCAAGTTTGGTTCAGAGGATTTACCGGTATGTAGACAGTTTAGCTTAGAA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TCTGAAACATCCAAGTTTGGTTCAGAGGATTTACCGGTATGTAGACAGTTTAGCTTAGAA 1433
Query 1440 GAGATAGTTAAAGCTACAAAGAACTTCGATAAGACTATGATACTCGGTGAAAGCTCCTTA 1499
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1434 GAGATAGTTAAAGCTACAAAGAACTTCGATAAGACCATGATACTCGGTGAAAGCTCATTA 1493
Query 1500 TATGGCACGCTTTACAAAGGAAATCTTGAGAATGGAACAAAAGTGGCAATAAGATGCTTA 1559
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1494 TATGGCACGCTTTACAAAGGAAATCTTGATAATGGAACAAAAGTGGCTATAAGATGCTTA 1553
Query 1560 CCTTCATCGAAGAAATACTCGATAAGGAATCTTAAACTGCGGTTGGATTTGCTCGCAAAG 1619
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 1554 CCTTCATCGAAGAAATACTCAATAAGGAATCTAAAACTGCGGTTAGATTTGCTCGCAAAG 1613
Query 1620 CTTAGACACCCGAATCTTGTCTGCTTGTTGGGTCATTGCATAGATTGTGGAGGAAAAGAT 1679
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1614 CTTAGACACCCGAATCTCGTTTGCTTGTTGGGTCATTGCATAGATTGTGGAGGAAAAGAT 1673
Query 1680 GATTACAGCGTTGAGAAAGTCTTTTTGATTTATGAGTACATTCCAAATGGAAACTTCCAA 1739
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1674 GATTACAGCGTCGAAAAAGTCTTTTTGATTTATGAATACATTCCAAATGGAAACTTCCAA 1733
Query 1740 TCTTGTCTCTCAGATAATAGTTCAGGTAAGGGTATGAATTGGTCAGAGAGGCTTAATGTT 1799
||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 1734 TCTTGTCTCTCAGATGATAGTTCAGGTAAGGCTATGAGTTGGTCAGAGAGGCTGAATGTT 1793
Query 1800 CTCACAGGTGTTGCAAAAGCTGTTCATTTTCTTCACACTGGAGTTATTCCTGGATTCTTC 1859
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 CTTACAGGTGTTGCAAAAGCTGTTCATTTTCTTCACACTGGAGTTATTCCTGGATTCTTC 1853
Query 1860 AGCAATAGACTCAAGACTAACAACGTTTTGCTTAACCAACATCGGTTTGCGAAGCTGAGT 1919
|||||||||||||||||||| || || |||||||||||||| |||||||| |||||||||
Sbjct 1854 AGCAATAGACTCAAGACTAATAATGTCTTGCTTAACCAACACCGGTTTGCAAAGCTGAGT 1913
Query 1920 GATTATGGTTTGTCCATTGTCTCTGAAGCAACCAGACATAACACAGAAATCGCAAAATCA 1979
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1914 GATTATGGTTTGTCCATTGTCTCTGAGGCAACCAGACATAACACAGAAATCGCAAAATCA 1973
Query 1980 TGGCAAATGTCAAGGCTAGAAGACGATGTTTACAGCTTTGGATTGATTCTTCTACAATCA 2039
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1974 TGGCAAATGTCAAGGCTAGAAGACGATGTTTACAGCTTCGGATTGATTCTTCTACAATCA 2033
Query 2040 ATCGTTGGACCATCTGTATCCGCAAGAGAAGAAGCATTTCTACGAGACGAACTGGCATCG 2099
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2034 ATCGTTGGACCATCTGTATCCGCAAGAGAAGAAGCATTTCTACGGGACGAACTGGCATCG 2093
Query 2100 TTGGAGAGCGAAGAAGGGAGGAGAAGAATGGTGAATCCGACAGTACAAGCCACTTGTCGA 2159
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2094 TTGGAGAGCGAGGAAGGGAGAAGAAGAATGGTGAATCCGACAGTACAAGCCACTTGTCGG 2153
Query 2160 AACGGATCACTGATAAGAGTGATAACTCTGATGAACAAATGTGTTTCACCTGAATCTTTA 2219
||||||||| ||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 2154 AACGGATCATTGATAAGAGTGATAACTCTAATGAACAAATGTGTTTCGCCGGAATCTTTA 2213
Query 2220 AGCCGACCGTCCTTCGAAGATATCTTGTGGAATTTACAGTATGCTTCTCAGTTGCAAGCT 2279
|||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 2214 AGCCGACCATCCTTCGAAGATATCTTGTGGAATCTACAATATGCTTCTCAGTTGCAAGCT 2273
Query 2280 GCTTCTGATGGTGACCAGTGTTAATATATTCATAGCTTCTTCTTCTCTTAGT 2331
||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2274 GCTTCAGATGGTGACCAGTGTTAATATATTCATAGCTTCTTCTTCTTTTAGT 2325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93930544170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5