BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G63440.2

Length=982
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg332565 jgi|Araly1|332565|fgenesh1_pm.C_scaffold_8001908          1175    0.0  


> Ahg332565 jgi|Araly1|332565|fgenesh1_pm.C_scaffold_8001908
Length=699

 Score = 1175 bits (636),  Expect = 0.0
 Identities = 678/699 (97%), Gaps = 0/699 (0%)
 Strand=Plus/Plus

Query  59   atgccgaagagaaCGACACACACGTACTCGAGCGAGGACGCCGCGCCGGATGGACCCGAC  118
            ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1    ATGCCGAAGAGAACGACGCACACGTACTCGAGCGAGGACGCGGCGCCGGATGGACCCGAC  60

Query  119  TCTGATCTCTTCGTATACTACTGCAAACACTGTGGTTCTCATGTCCTTATCACTGATACC  178
            |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  61   TCTGATCTCTTCGTTTACTACTGCAAGCACTGTGGTTCTCATGTCCTTATCACCGATACC  120

Query  179  CAGTTGCAGAAGATGCCAAAAAGGAAGACCGACAGGTCGAATGTACTTGACAAGAAGACG  238
            ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct  121  CAGTTGCAGAAGATGCCAAAAAGGAAGACCGACAGATCTAATGTACTTGACAAGAAGAAG  180

Query  239  CACCTTGCTAGGTTGAATGTCAGCGAGGGAGGAAAAGTTTTATTGAAACGTGGCGAAGGA  298
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  181  CACCTTGCTAGGTTGAATGTCAGCGAGGGAGGAAAAGTTCTATTGAAACGTGGCGAAGGA  240

Query  299  AAAATGGAGAGACAGTTTAGAATGAACTGTATCGGTTGTGAGCTTTTTGTTTGTTATCGT  358
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AAAATGGAGAGACAATTTAGAATGAACTGTATCGGTTGTGAGCTTTTTGTTTGTTATCGT  300

Query  359  GCTGAAGAGAATCTGGAAACAGCGTCTTTCATTTACATTGTTGATGGAGCACTTAGTGCT  418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GCTGAAGAGAATCTGGAAACAGCGTCTTTCATTTACATTGTTGATGGAGCACTTAGTGCT  360

Query  419  GTTGCTGCAGAAACCAACCCACAGGATGCACCAGTACCTCCCTGCATTTCACAACTCGAC  478
            |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  361  GTTGCTGCAGAAACTAACCCACAGGATGCACCTGTACCTCCCTGCATTTCCCAACTCGAC  420

Query  479  GGTGGACTTGTTCAGGTTGCAATAGAAGTGGAAGACCGTGCACAACGTTCAGCAATCACA  538
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  421  GGTGGACTTGTTCAGGTTGCAATAGAAGTGGAAGACCGTGCACAACGCTCAGCAATCACA  480

Query  539  AGGGTAAATGCTGATGATGTTCGTGTGACTGTTGCTGCACCAGCAGCCCGTGGGGAAGCT  598
            |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct  481  AGGGTAAATGCTGATGATGTTCGTGTCACTGTTGCCGCACCAGCAGCTCGTGGGGAAGCT  540

Query  599  AACAACGAGCTTCTGGAATTCATGGGAAGGGTTCTTGGTTTAAGGTTGAGCCAGATGACT  658
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  541  AACAACGAGCTTCTGGAATTCATGGGCAGGGTTCTTGGTTTAAGGTTGAGCCAGATGACT  600

Query  659  CTCCAAAGAGGTTGGAATAGCAAATCAAAACTCCTCGTGGTCGAGGATTTATCAGCTAGA  718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  601  CTCCAAAGAGGTTGGAATAGCAAATCAAAACTCCTCGTGGTCGAGGATTTATCTGCTAGA  660

Query  719  CAAGTGTATGAGAAGCTTCTCGAGGCCGTTGTACCGTAA  757
            |||||||||||||||||||| ||||| ||||||||||||
Sbjct  661  CAAGTGTATGAGAAGCTTCTTGAGGCTGTTGTACCGTAA  699



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36483631569


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5