BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63450.1
Length=1679
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496532 jgi|Araly1|496532|fgenesh2_kg.8__2348__AT5G63450.1 2579 0.0
Ahg485210 jgi|Araly1|485210|fgenesh2_kg.5__1202__AT3G48520.1 987 0.0
Ahg927566 jgi|Araly1|927566|scaffold_300023.1 106 6e-22
> Ahg496532 jgi|Araly1|496532|fgenesh2_kg.8__2348__AT5G63450.1
Length=1677
Score = 2579 bits (1396), Expect = 0.0
Identities = 1588/1680 (95%), Gaps = 15/1680 (1%)
Strand=Plus/Plus
Query 1 ACAAATCAAAACAACATAATTAACTTACCCAAACAAGAAACCCAAGAATCCAAAATGGAA 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACACATCAAAACAACATAATTAACTTACCCAAACAAGAAACCCAAGAATCCAAAATGGAA 60
Query 61 ATGCTCAACGCAATAATTCTCATCCTATTTCCAATCATAGGGTTTGTATTAATCTTCTCA 120
||||||| ||||| ||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 61 ATGCTCAGGGCAATCATTCTCATCATATTTCCAATCTTAGGGTTTATATTAATCTTCTCA 120
Query 121 TTCCCAACAAAAACCCTAAAAGCC-AAA--ACCGCATCACCCTCTAATCCGACATCGTA- 176
|| |||||||||||||||||||| ||| ||| || || ||||||||||||| | ||
Sbjct 121 TTTTCAACAAAAACCCTAAAAGCCAAAACCACCACACCATCCTCTAATCCGACGGCATAT 180
Query 177 CCAACTCATCGGCTCTATTCTCTCCTTCAACAAAAACCGCCACCGTCTTCTCCAATGGTA 236
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CC-ACTCATCGGCTCTATTCTCTCCTTCAACAAAAACCGCCACCGTCTTCTCCAATGGTA 239
Query 237 CACAGATCTCCTCCGTCTCTCTCCGTCTCAAACCATCACCGTCGATCTCCTCTTCGGTCG 296
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 CACAGATCTTCTCCGTCTCTCTCCCTCTCAAACCATCACCGTCGATCTCCTCTTCGGTCG 299
Query 297 TCGGACTATCATCACTGCAAACCCTGAAAACGTTGAGCACATTCTCAAAACAAATTTTTA 356
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCGGACTATTATCACTGCAAACCCTGAAAACGTTGAGCACATTCTCAAAACAAATTTTTA 359
Query 357 TAACTTCCCTAAAGGCAAACCTTTCACCGACCTCCTAGGAGATCTACTCGGCGGCGGAAT 416
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 TAACTTCCCTAAAGGCAAACCTTTCACCGACCTCCTAGGAGATCTACTGGGCGGCGGAAT 419
Query 417 CTTTAATTCTGACGGCGAGTTATGGAGCTCACAGCGTAAACTCGCGAGCCACGAGTTTAC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTTTAATTCTGACGGCGAGTTATGGAGCTCACAGCGTAAACTCGCGAGCCACGAGTTTAC 479
Query 477 AATGCGTTCTCTTAGGGAATTCACTTTCGAAATCCTCCGTGAAGAAGTCCAAAACCGCCT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AATGCGTTCTCTTAGGGAATTCACTTTCGAAATCCTCCGTGAAGAAGTCCAAAACCGCCT 539
Query 537 CATTCCGGTGCTTTCCTCCGCCGTGGACTGTGGAGAGACGGTTGATTTTCAGGAGGTTTT 596
|||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||
Sbjct 540 CATTCCGGTGCTTTCCTCCGCCGTGGACGGTGGAGGGACGGTTGACTTTCAGGAGGTTTT 599
Query 597 GAAGCGCTTTGCTTTCGATGTTGTATGCAAAGTGTCGTTGGGTTGGGATCCGGATTGTTT 656
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 GAAGCGCTTTGCTTTCGATGTTGTATGCAAAGTTTCGTTGGGTTGGGATCCGGATTGTTT 659
Query 657 GGATTTGACCCGACCCGTTCCAGAACTTGTTAAGGCTTTTGATGTAGCGGCGGAGATCAG 716
||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||
Sbjct 660 GGATTTGACCCGACCCGTTCCGGATCTCGTTAAAGCTTTTGATGTAGCGGCGGAGATCAG 719
Query 717 CGCTCGCCGCGCCACGGAGCCGGTTTACGCCGTGTGGAAAG-T-AAAGCGTTTCTTGAAC 774
||||||||||||||||||||| ||||||||||| ||||| | | ||| ||||| ||||||
Sbjct 720 CGCTCGCCGCGCCACGGAGCCAGTTTACGCCGTTTGGAA-GCTGAAA-CGTTTGTTGAAC 777
Query 775 GTAGGGAGCGAGAAGAGGTTGAGAGAAGCCATCAAGACCGTACACTTGTCTGTGTCTGAG 834
|||||||||||||||||| ||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 778 GTAGGGAGCGAGAAGAGGCTGAGAGAAGCCATCAAGACAGTACACGTGTCTGTCTCTGAG 837
Query 835 ATCATCCGGGCCAAAAAGAAAAGCCTCGATATCGGTGGTGACGTGTCGGACAAGCAGGAC 894
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATCATCCGTGCCAAAAAGAAAAGCCTCGATATCGGTGGTGACGTGTCGGACAAGCAGGAC 897
Query 895 CTGCTGTCGAGGTTTCTCGCCGCTGGCCACGGGGAAGAAGCCGTGAGGGATAGTGTAATC 954
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTCCTGTCGAGGTTTCTCGCCGCTGGCCACGGGGAAGAAGCCGTGAGGGATAGTGTAATC 957
Query 955 AGCTTTATTATGGCGGGAAGGGATACAACGTCGGCAGCGATGACGTGGCTGTTTTGGTTG 1014
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 958 AGCTTCATTATGGCGGGAAGGGATACCACGTCGGCAGCGATGACGTGGCTGTTTTGGTTG 1017
Query 1015 TTGAGTCAAAATGATGACGTGGAGACGAAGATACTCGACGAATTGAGAAACAAAGGGTCT 1074
||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||| |||
Sbjct 1018 TTGAGTCAAAATGATGACGTGGAGAAGAAGATACTAGAAGAAGTGAGAAACAAAGGATCT 1077
Query 1075 TTAGGGTTAGGGTTTGAGGATTTGAGAGAGATGAGTTACACAAAAGCTTGTCTGTGTGAA 1134
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1078 TTAGGGTTAGGGTTTGAGGATTTGAGAGAGATGAGTTACACGAAAGCTTGTCTCTGTGAA 1137
Query 1135 GCAATGAGGCTTTACCCACCAGTGGCTTGGGACTCAAAGCATGCAGCAAACGACGACATT 1194
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1138 GCAATGAGGCTTTACCCGCCAGTGGCTTGGGACTCGAAGCATGCAGCAAACGACGACGTT 1197
Query 1195 TTGCCAGATGGAACACCTCTCAAAAAGGGAGACAAAGTCACTTATTTCCCTTACGGTATG 1254
||||||||||| |||| ||||||||| ||||||||||| ||||| |||||||| ||||||
Sbjct 1198 TTGCCAGATGGTACACTTCTCAAAAAAGGAGACAAAGTTACTTACTTCCCTTATGGTATG 1257
Query 1255 GGAAGGATGGAGAAGGTGTGGGGTAAAGATTGGGACGAGTTTAAACCAAACCGGTGGTTT 1314
|||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1258 GGAAGGATGGAGAATGTGTGGGGTAAAGACTGGGAAGAGTTTAAACCGAACCGGTGGTTT 1317
Query 1315 GAGGAAGAACCGAGTTACGGTACAAAACCGGTTTTGAAAAGTGTGAGTTCGTTCAAGTTT 1374
||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1318 GAGGAAGAACCGAGTAACGGTACAAAACGGGTTTTGAAAAGTGTCAGTTCGTTCAAGTTT 1377
Query 1375 CCGGTTTTCCAAGCCGGACCAAGGGTTTGCATAGGTAAAGAAATGGCTTTTACACAAATG 1434
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1378 CCGGTTTTCCAAGCCGGACCAAGGGTTTGCATAGGGAAAGAAATGGCTTTTACACAAATG 1437
Query 1435 AAATACGTGGTTGGTTCAGTTTTGAGTCGGTTTAAGATTATACCGGTTTGCAATAACCGG 1494
||||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||||||
Sbjct 1438 AAATACGTGGTTGGTTCGGTTTTGAGTCGATTTGAGATTATACCGGTTTGTGATAACCGG 1497
Query 1495 -C--CGGTCTTTGTTCCTCTTCTAACCGCTCACATGGCTGGTGGGCTAAAGGTGAAGATC 1551
| |||| |||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1498 GCGGCGGTTTTTGTTCCTCTTTTAACGGCTCACATGGCTGGTGGGCTAAAGGTGAAGATC 1557
Query 1552 AAGAGGAGAGAGCAA-TGTGATTCGATGTATAT-TT-AATTAATTGATTAATCAAGTCAT 1608
||||||||||||||| ||||||||||||||| | || |||||||| | ||||||||||||
Sbjct 1558 AAGAGGAGAGAGCAAATGTGATTCGATGTATTTATTCAATTAATTAACTAATCAAGTCAT 1617
Query 1609 GTCCTTGTAGAATATCCAACTAATATGTAAAATGTGTGGTTTATAAATTAAATCAAATAA 1668
|||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1618 GTCCTTATAGAATATCCAACTAATATGTAAAATGTGTGGGTTATACCTTAAATCAAATAA 1677
> Ahg485210 jgi|Araly1|485210|fgenesh2_kg.5__1202__AT3G48520.1
Length=1647
Score = 987 bits (534), Expect = 0.0
Identities = 1135/1420 (80%), Gaps = 61/1420 (4%)
Strand=Plus/Plus
Query 170 CATCGTA-CCAACTCATCGGCTCTATTCTCTCCTTCAACAAAAACCGCCACCGTCTTCTC 228
||||||| || |||||| ||||| || |||||||||||||||||||| ||||||||||||
Sbjct 110 CATCGTATCC-ACTCATTGGCTCCATACTCTCCTTCAACAAAAACCGTCACCGTCTTCTC 168
Query 229 CAATGGTACACAGATCTCCTCCGTCTCTCTCCGTCTCAAACCATCACCG-TCGATCTCCT 287
||||||||||| || || |||||| ||||||||| |||||||||| | || ||||||
Sbjct 169 CAATGGTACACCGAACTTCTCCGTATCTCTCCGTATCAAACCATCTTAGTTC-CTCTCCT 227
Query 288 CTTCGGTCGTCGGACTATCATCACTGCAAACCCTGAAAACGTTGAGCACATTCTCAAAAC 347
| | ||||| || || |||| |||||||| |||||||| || ||||||||| |||
Sbjct 228 CGGCAACCGTCGCACCATTGTCACAGCAAACCCAGAAAACGTCGAATACATTCTCAGAAC 287
Query 348 AAA-TTTTTATAACTTCCCTAAAGGCAAACCTTTCACCGACCTCCTAGGAGATCTACTCG 406
||| ||||| |||||||||||||| |||||||| ||||| || || || ||||| ||||
Sbjct 288 AAACTTTTT-CAACTTCCCTAAAGGTAAACCTTTTACCGATCTTCTTGGTGATCTCCTCG 346
Query 407 GCGGCGGAATCTTT-AA-TTCTGACGG-CGAGTTATGGAGCTCACAGCGTAAACTCGCGA 463
|||| || || ||| || || ||||| | | | |||||||||||| ||||||||||| |
Sbjct 347 GCGGAGGCAT-TTTCAACGTC-GACGGTC-ACTCATGGAGCTCACAACGTAAACTCGCTA 403
Query 464 GCCACGAGTT-TAC-AATGCGTTCTCTTAGGGA-ATTCACTTTCGAAATCCTCCGTGAAG 520
|||||||||| | | | | |||||||||| ||| || |||| || | || || |
Sbjct 404 GCCACGAGTTCT-CGACT-CGTTCTCTTA-GGAGTTTTGCTTTTGAGGTTCTTAAAGACG 460
Query 521 AAGTCCAAAACCGCCTCATTCCGGTGCTTTCCT-CCGCCG-TGGACTG-TGGAGA-GACG 576
|||| ||||||| ||| |||| ||||| | || | || | | || || ||| | |||
Sbjct 461 AAGTAGAAAACCGTCTCGTTCCCGTGCTAT-CTGCGGCGGCT-GA-TGTTGG-CACGAC- 515
Query 577 GTT-GATTTTCAGGAGGTTTTGAAGCGCTTTGCTTTCGATGTTGTATGCAAAGTGTCGTT 635
|| ||||| || || |||||||| || |||||||| |||||||| || ||||| |||||
Sbjct 516 CTTGGATTTGCAAGATGTTTTGAAACGTTTTGCTTTTGATGTTGTTTGTAAAGTCTCGTT 575
Query 636 GGGTTGGGATCCGGATTGTTTGGATTTGACCCGACCCGTTCCAGAA-CTTGTTAAGGCTT 694
||||||||||||||||||||||||| | |||||||| ||| | ||||| ||||||
Sbjct 576 GGGTTGGGATCCGGATTGTTTGGATCTAACCCGACCAGTTA-ATCCTCTTGTGGAGGCTT 634
Query 695 TTGATGTAGCGGCGGAGATCAGCGCTCGCCGCGCCACGGAGCCGGTTTACGCCGTGTGGA 754
|||| ||||| ||||| || |||||||| || || |||||||||||||| || ||||
Sbjct 635 TTGACACCGCGGCTGAGATTAGTGCTCGCCGTGCTACAGAGCCGGTTTACGCTGTTTGGA 694
Query 755 AAGTAAAGCGTTTCTTGAACGTAGGGA-GCGAGAAGAGGTTGAGAGAAGCCATCAAGACC 813
|| |||||| | |||||||| |||| |||||| |||| | |||||||| |||| ||||
Sbjct 695 TGGTGAAGCGTGTGTTGAACGT-GGGAAGCGAGAGGAGGCTAAGAGAAGCGATCAGGACC 753
Query 814 GTACACTTGTCTG-TGTCTGAGATCATCCGGGCCAAAAAGAAAAGCCTCGATATCGG--- 869
|||||| ||| || | |||||||| || | || || ||||| || || || |||||
Sbjct 754 GTACACGTGT-TGGTCTCTGAGATTGTCAGAGCTAAGAAGAAGAGTCTTGAGATCGGAAC 812
Query 870 TGGTGACGT-GTCGGACAAGCAGGACCTGCTGTCGAGGTTTCTCGCCGCTGGCCACGG-G 927
||| || | | || | | ||| || || ||||||||||||| ||||| |||||| |
Sbjct 813 TGGAGAAGAAG-CG-A-A-GCAAGATCTTTTGTCGAGGTTTCTAGCCGCCGGCCACAACG 868
Query 928 GAAGAAGCCGTGAGGGATAGTG-TAATCAGCTTTATTATGGCGGGAAGGGATACAACGTC 986
| ||||| |||||||| | || | || || ||||| ||||||||||| ||||| |||||
Sbjct 869 GT-GAAGCAGTGAGGGACA-TGGTTATTAGTTTTATCATGGCGGGAAGAGATACGACGTC 926
Query 987 GGCAGCGATGACGTGGCTGTTTTGGTTGTTGAGTCAAAATGATGACGTGGAGACGAAGAT 1046
||||||||||||||||||||||||||||||| | | || ||||||||||||| ||||||
Sbjct 927 AGCAGCGATGACGTGGCTGTTTTGGTTGTTGACTGAGAACGATGACGTGGAGAGGAAGAT 986
Query 1047 ACTCGACGAA-TTGAGAAACAAAGGGTC-TTTAGGGTTAGGGTTTGAGGATTTGAGAGAG 1104
| || ||| |||| | || | |||||||||||||||||||||||| | ||||
Sbjct 987 TTTAGAAGAAGTTGACC--CGTTGGTTAGTTTAGGGTTAGGGTTTGAGGATTTAAAAGAG 1044
Query 1105 ATGAGTTACACAAAAGCTTGTCTGTGTGAAGCAATGAGGCTTTACCCACCAGTGGCTTGG 1164
|||| ||| ||||| |||||||| |||||||| ||||||||||| || |||||| | |||
Sbjct 1045 ATGAATTATACAAAGGCTTGTCTATGTGAAGCCATGAGGCTTTATCCTCCAGTGTCGTGG 1104
Query 1165 GACTCAAAGCATGCAGCAAACGACGACATTTTGCCAGATGGAACACCTCTCAAAA-AGGG 1223
||||| |||||||| |||||||||||| |||| ||||| || |||| | | || | |||
Sbjct 1105 GACTCTAAGCATGCTGCAAACGACGACGTTTTACCAGACGGGACACGTGTGAAGAGAGG- 1163
Query 1224 AGACAAAGTCACTTATTTCCCTTACGGTATGGGAAGGATGGAGAAGGTGTGGGGTAAAGA 1283
|||||| || ||||||||||| ||||||||||| |||||||||| | | ||||| | ||
Sbjct 1164 AGACAAGGTGACTTATTTCCCATACGGTATGGGGAGGATGGAGACGTTATGGGGCACGGA 1223
Query 1284 TTGGGACGAGTTTAAACCAAACCGGTGGTTTGAGGAAGAACCGAGTTACGGTACAAAACC 1343
|| || |||||||||||||||||||||||||| |||||| || | | |||| |||
Sbjct 1224 TTCAGAAGAGTTTAAACCAAACCGGTGGTTTGATTCTGAACCGGGT-A-G-TACACGACC 1280
Query 1344 GGTTTTGAAAAGTGTGAGTTCGTT-CAAGTTTCCGGTTTTCCAAGCCGGACCAAGGGTTT 1402
|||||||||| | ||| | || ||| ||||||||||| ||||||||||| |||||||
Sbjct 1281 GGTTTTGAAACCCATTAGTCC-TTACAAATTTCCGGTTTTTCAAGCCGGACCGAGGGTTT 1339
Query 1403 GCATAGGTAAAGAA-ATGGCTTTTACACAAATGAAATACGTGGTTGGTTCAGTTTTGAGT 1461
| |||| |||| | ||||| |||| || |||||||||||||||||||| |||||||||
Sbjct 1340 GTGTAGG-AAAGGAGATGGCGTTTATGCAGATGAAATACGTGGTTGGTTCTGTTTTGAGT 1398
Query 1462 CGGTTTAAGATTATACCGGTTTGCAATA-ACCGGCCGGTCTTTGTTCCTCTTCTAACCGC 1520
|||||| |||||||||||||| | || |||||||||| |||||||||||| |||| ||
Sbjct 1399 CGGTTTGAGATTATACCGGTTAACC-TAGACCGGCCGGTTTTTGTTCCTCTTTTAACGGC 1457
Query 1521 TCACATGGCTGGTGGGCTAAAGGTGAAGATCAAGAGGAGA 1560
|| |||||||||||||| ||||||||||||||||| |||
Sbjct 1458 ACATATGGCTGGTGGGCTCAAGGTGAAGATCAAGAGAAGA 1497
> Ahg927566 jgi|Araly1|927566|scaffold_300023.1
Length=1538
Score = 106 bits (57), Expect = 6e-22
Identities = 139/176 (79%), Gaps = 15/176 (9%)
Strand=Plus/Plus
Query 1237 TATTTCCCTTACGGTATGGGAAGGATGGAGAAG-GTGTGGGGTAAAGATTGGGACGAGTT 1295
||||| || || |||||||| || |||||| || | ||||| |||||||||| |||||
Sbjct 1170 TATTTTCCATATGGTATGGGGAGAATGGAGGAGCAT-TGGGGGGAAGATTGGGATGAGTT 1228
Query 1296 TAAACCAAACCGGTGGTTTGAGGAAGAACCGAGTTACGGTACAAA---AC--C-G-GTTT 1348
|||||||||||||||| |||| | || || || | || ||| | | | ||||
Sbjct 1229 TAAACCAAACCGGTGGGTTGATG-AG--TCGTCCTATGATA-AAACCTGCTGCAGAGTTT 1284
Query 1349 TG-AAAAGTGTGAGTTCGTTCAAGTTTCCGGTTTTCCAAGCCGGACCAAGGGTTTG 1403
|| ||||| |||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 1285 TGAAAAAG-GTGAATCCGTTCAAGTTTCCGGTTTTCCAAGCCGGCCCAAGGGTTTG 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62963174985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5