BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63450.1 Length=1679 Score E Sequences producing significant alignments: (Bits) Value Ahg496532 jgi|Araly1|496532|fgenesh2_kg.8__2348__AT5G63450.1 2579 0.0 Ahg485210 jgi|Araly1|485210|fgenesh2_kg.5__1202__AT3G48520.1 987 0.0 Ahg927566 jgi|Araly1|927566|scaffold_300023.1 106 6e-22 > Ahg496532 jgi|Araly1|496532|fgenesh2_kg.8__2348__AT5G63450.1 Length=1677 Score = 2579 bits (1396), Expect = 0.0 Identities = 1588/1680 (95%), Gaps = 15/1680 (1%) Strand=Plus/Plus Query 1 ACAAATCAAAACAACATAATTAACTTACCCAAACAAGAAACCCAAGAATCCAAAATGGAA 60 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACACATCAAAACAACATAATTAACTTACCCAAACAAGAAACCCAAGAATCCAAAATGGAA 60 Query 61 ATGCTCAACGCAATAATTCTCATCCTATTTCCAATCATAGGGTTTGTATTAATCTTCTCA 120 ||||||| ||||| ||||||||| ||||||||||| |||||||| |||||||||||||| Sbjct 61 ATGCTCAGGGCAATCATTCTCATCATATTTCCAATCTTAGGGTTTATATTAATCTTCTCA 120 Query 121 TTCCCAACAAAAACCCTAAAAGCC-AAA--ACCGCATCACCCTCTAATCCGACATCGTA- 176 || |||||||||||||||||||| ||| ||| || || ||||||||||||| | || Sbjct 121 TTTTCAACAAAAACCCTAAAAGCCAAAACCACCACACCATCCTCTAATCCGACGGCATAT 180 Query 177 CCAACTCATCGGCTCTATTCTCTCCTTCAACAAAAACCGCCACCGTCTTCTCCAATGGTA 236 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CC-ACTCATCGGCTCTATTCTCTCCTTCAACAAAAACCGCCACCGTCTTCTCCAATGGTA 239 Query 237 CACAGATCTCCTCCGTCTCTCTCCGTCTCAAACCATCACCGTCGATCTCCTCTTCGGTCG 296 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 240 CACAGATCTTCTCCGTCTCTCTCCCTCTCAAACCATCACCGTCGATCTCCTCTTCGGTCG 299 Query 297 TCGGACTATCATCACTGCAAACCCTGAAAACGTTGAGCACATTCTCAAAACAAATTTTTA 356 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TCGGACTATTATCACTGCAAACCCTGAAAACGTTGAGCACATTCTCAAAACAAATTTTTA 359 Query 357 TAACTTCCCTAAAGGCAAACCTTTCACCGACCTCCTAGGAGATCTACTCGGCGGCGGAAT 416 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 360 TAACTTCCCTAAAGGCAAACCTTTCACCGACCTCCTAGGAGATCTACTGGGCGGCGGAAT 419 Query 417 CTTTAATTCTGACGGCGAGTTATGGAGCTCACAGCGTAAACTCGCGAGCCACGAGTTTAC 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 CTTTAATTCTGACGGCGAGTTATGGAGCTCACAGCGTAAACTCGCGAGCCACGAGTTTAC 479 Query 477 AATGCGTTCTCTTAGGGAATTCACTTTCGAAATCCTCCGTGAAGAAGTCCAAAACCGCCT 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AATGCGTTCTCTTAGGGAATTCACTTTCGAAATCCTCCGTGAAGAAGTCCAAAACCGCCT 539 Query 537 CATTCCGGTGCTTTCCTCCGCCGTGGACTGTGGAGAGACGGTTGATTTTCAGGAGGTTTT 596 |||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| Sbjct 540 CATTCCGGTGCTTTCCTCCGCCGTGGACGGTGGAGGGACGGTTGACTTTCAGGAGGTTTT 599 Query 597 GAAGCGCTTTGCTTTCGATGTTGTATGCAAAGTGTCGTTGGGTTGGGATCCGGATTGTTT 656 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 600 GAAGCGCTTTGCTTTCGATGTTGTATGCAAAGTTTCGTTGGGTTGGGATCCGGATTGTTT 659 Query 657 GGATTTGACCCGACCCGTTCCAGAACTTGTTAAGGCTTTTGATGTAGCGGCGGAGATCAG 716 ||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||| Sbjct 660 GGATTTGACCCGACCCGTTCCGGATCTCGTTAAAGCTTTTGATGTAGCGGCGGAGATCAG 719 Query 717 CGCTCGCCGCGCCACGGAGCCGGTTTACGCCGTGTGGAAAG-T-AAAGCGTTTCTTGAAC 774 ||||||||||||||||||||| ||||||||||| ||||| | | ||| ||||| |||||| Sbjct 720 CGCTCGCCGCGCCACGGAGCCAGTTTACGCCGTTTGGAA-GCTGAAA-CGTTTGTTGAAC 777 Query 775 GTAGGGAGCGAGAAGAGGTTGAGAGAAGCCATCAAGACCGTACACTTGTCTGTGTCTGAG 834 |||||||||||||||||| ||||||||||||||||||| |||||| ||||||| |||||| Sbjct 778 GTAGGGAGCGAGAAGAGGCTGAGAGAAGCCATCAAGACAGTACACGTGTCTGTCTCTGAG 837 Query 835 ATCATCCGGGCCAAAAAGAAAAGCCTCGATATCGGTGGTGACGTGTCGGACAAGCAGGAC 894 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 ATCATCCGTGCCAAAAAGAAAAGCCTCGATATCGGTGGTGACGTGTCGGACAAGCAGGAC 897 Query 895 CTGCTGTCGAGGTTTCTCGCCGCTGGCCACGGGGAAGAAGCCGTGAGGGATAGTGTAATC 954 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 CTCCTGTCGAGGTTTCTCGCCGCTGGCCACGGGGAAGAAGCCGTGAGGGATAGTGTAATC 957 Query 955 AGCTTTATTATGGCGGGAAGGGATACAACGTCGGCAGCGATGACGTGGCTGTTTTGGTTG 1014 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 958 AGCTTCATTATGGCGGGAAGGGATACCACGTCGGCAGCGATGACGTGGCTGTTTTGGTTG 1017 Query 1015 TTGAGTCAAAATGATGACGTGGAGACGAAGATACTCGACGAATTGAGAAACAAAGGGTCT 1074 ||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||| ||| Sbjct 1018 TTGAGTCAAAATGATGACGTGGAGAAGAAGATACTAGAAGAAGTGAGAAACAAAGGATCT 1077 Query 1075 TTAGGGTTAGGGTTTGAGGATTTGAGAGAGATGAGTTACACAAAAGCTTGTCTGTGTGAA 1134 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 1078 TTAGGGTTAGGGTTTGAGGATTTGAGAGAGATGAGTTACACGAAAGCTTGTCTCTGTGAA 1137 Query 1135 GCAATGAGGCTTTACCCACCAGTGGCTTGGGACTCAAAGCATGCAGCAAACGACGACATT 1194 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| || Sbjct 1138 GCAATGAGGCTTTACCCGCCAGTGGCTTGGGACTCGAAGCATGCAGCAAACGACGACGTT 1197 Query 1195 TTGCCAGATGGAACACCTCTCAAAAAGGGAGACAAAGTCACTTATTTCCCTTACGGTATG 1254 ||||||||||| |||| ||||||||| ||||||||||| ||||| |||||||| |||||| Sbjct 1198 TTGCCAGATGGTACACTTCTCAAAAAAGGAGACAAAGTTACTTACTTCCCTTATGGTATG 1257 Query 1255 GGAAGGATGGAGAAGGTGTGGGGTAAAGATTGGGACGAGTTTAAACCAAACCGGTGGTTT 1314 |||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 1258 GGAAGGATGGAGAATGTGTGGGGTAAAGACTGGGAAGAGTTTAAACCGAACCGGTGGTTT 1317 Query 1315 GAGGAAGAACCGAGTTACGGTACAAAACCGGTTTTGAAAAGTGTGAGTTCGTTCAAGTTT 1374 ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 1318 GAGGAAGAACCGAGTAACGGTACAAAACGGGTTTTGAAAAGTGTCAGTTCGTTCAAGTTT 1377 Query 1375 CCGGTTTTCCAAGCCGGACCAAGGGTTTGCATAGGTAAAGAAATGGCTTTTACACAAATG 1434 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1378 CCGGTTTTCCAAGCCGGACCAAGGGTTTGCATAGGGAAAGAAATGGCTTTTACACAAATG 1437 Query 1435 AAATACGTGGTTGGTTCAGTTTTGAGTCGGTTTAAGATTATACCGGTTTGCAATAACCGG 1494 ||||||||||||||||| ||||||||||| ||| |||||||||||||||| |||||||| Sbjct 1438 AAATACGTGGTTGGTTCGGTTTTGAGTCGATTTGAGATTATACCGGTTTGTGATAACCGG 1497 Query 1495 -C--CGGTCTTTGTTCCTCTTCTAACCGCTCACATGGCTGGTGGGCTAAAGGTGAAGATC 1551 | |||| |||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 1498 GCGGCGGTTTTTGTTCCTCTTTTAACGGCTCACATGGCTGGTGGGCTAAAGGTGAAGATC 1557 Query 1552 AAGAGGAGAGAGCAA-TGTGATTCGATGTATAT-TT-AATTAATTGATTAATCAAGTCAT 1608 ||||||||||||||| ||||||||||||||| | || |||||||| | |||||||||||| Sbjct 1558 AAGAGGAGAGAGCAAATGTGATTCGATGTATTTATTCAATTAATTAACTAATCAAGTCAT 1617 Query 1609 GTCCTTGTAGAATATCCAACTAATATGTAAAATGTGTGGTTTATAAATTAAATCAAATAA 1668 |||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1618 GTCCTTATAGAATATCCAACTAATATGTAAAATGTGTGGGTTATACCTTAAATCAAATAA 1677 > Ahg485210 jgi|Araly1|485210|fgenesh2_kg.5__1202__AT3G48520.1 Length=1647 Score = 987 bits (534), Expect = 0.0 Identities = 1135/1420 (80%), Gaps = 61/1420 (4%) Strand=Plus/Plus Query 170 CATCGTA-CCAACTCATCGGCTCTATTCTCTCCTTCAACAAAAACCGCCACCGTCTTCTC 228 ||||||| || |||||| ||||| || |||||||||||||||||||| |||||||||||| Sbjct 110 CATCGTATCC-ACTCATTGGCTCCATACTCTCCTTCAACAAAAACCGTCACCGTCTTCTC 168 Query 229 CAATGGTACACAGATCTCCTCCGTCTCTCTCCGTCTCAAACCATCACCG-TCGATCTCCT 287 ||||||||||| || || |||||| ||||||||| |||||||||| | || |||||| Sbjct 169 CAATGGTACACCGAACTTCTCCGTATCTCTCCGTATCAAACCATCTTAGTTC-CTCTCCT 227 Query 288 CTTCGGTCGTCGGACTATCATCACTGCAAACCCTGAAAACGTTGAGCACATTCTCAAAAC 347 | | ||||| || || |||| |||||||| |||||||| || ||||||||| ||| Sbjct 228 CGGCAACCGTCGCACCATTGTCACAGCAAACCCAGAAAACGTCGAATACATTCTCAGAAC 287 Query 348 AAA-TTTTTATAACTTCCCTAAAGGCAAACCTTTCACCGACCTCCTAGGAGATCTACTCG 406 ||| ||||| |||||||||||||| |||||||| ||||| || || || ||||| |||| Sbjct 288 AAACTTTTT-CAACTTCCCTAAAGGTAAACCTTTTACCGATCTTCTTGGTGATCTCCTCG 346 Query 407 GCGGCGGAATCTTT-AA-TTCTGACGG-CGAGTTATGGAGCTCACAGCGTAAACTCGCGA 463 |||| || || ||| || || ||||| | | | |||||||||||| ||||||||||| | Sbjct 347 GCGGAGGCAT-TTTCAACGTC-GACGGTC-ACTCATGGAGCTCACAACGTAAACTCGCTA 403 Query 464 GCCACGAGTT-TAC-AATGCGTTCTCTTAGGGA-ATTCACTTTCGAAATCCTCCGTGAAG 520 |||||||||| | | | | |||||||||| ||| || |||| || | || || | Sbjct 404 GCCACGAGTTCT-CGACT-CGTTCTCTTA-GGAGTTTTGCTTTTGAGGTTCTTAAAGACG 460 Query 521 AAGTCCAAAACCGCCTCATTCCGGTGCTTTCCT-CCGCCG-TGGACTG-TGGAGA-GACG 576 |||| ||||||| ||| |||| ||||| | || | || | | || || ||| | ||| Sbjct 461 AAGTAGAAAACCGTCTCGTTCCCGTGCTAT-CTGCGGCGGCT-GA-TGTTGG-CACGAC- 515 Query 577 GTT-GATTTTCAGGAGGTTTTGAAGCGCTTTGCTTTCGATGTTGTATGCAAAGTGTCGTT 635 || ||||| || || |||||||| || |||||||| |||||||| || ||||| ||||| Sbjct 516 CTTGGATTTGCAAGATGTTTTGAAACGTTTTGCTTTTGATGTTGTTTGTAAAGTCTCGTT 575 Query 636 GGGTTGGGATCCGGATTGTTTGGATTTGACCCGACCCGTTCCAGAA-CTTGTTAAGGCTT 694 ||||||||||||||||||||||||| | |||||||| ||| | ||||| |||||| Sbjct 576 GGGTTGGGATCCGGATTGTTTGGATCTAACCCGACCAGTTA-ATCCTCTTGTGGAGGCTT 634 Query 695 TTGATGTAGCGGCGGAGATCAGCGCTCGCCGCGCCACGGAGCCGGTTTACGCCGTGTGGA 754 |||| ||||| ||||| || |||||||| || || |||||||||||||| || |||| Sbjct 635 TTGACACCGCGGCTGAGATTAGTGCTCGCCGTGCTACAGAGCCGGTTTACGCTGTTTGGA 694 Query 755 AAGTAAAGCGTTTCTTGAACGTAGGGA-GCGAGAAGAGGTTGAGAGAAGCCATCAAGACC 813 || |||||| | |||||||| |||| |||||| |||| | |||||||| |||| |||| Sbjct 695 TGGTGAAGCGTGTGTTGAACGT-GGGAAGCGAGAGGAGGCTAAGAGAAGCGATCAGGACC 753 Query 814 GTACACTTGTCTG-TGTCTGAGATCATCCGGGCCAAAAAGAAAAGCCTCGATATCGG--- 869 |||||| ||| || | |||||||| || | || || ||||| || || || ||||| Sbjct 754 GTACACGTGT-TGGTCTCTGAGATTGTCAGAGCTAAGAAGAAGAGTCTTGAGATCGGAAC 812 Query 870 TGGTGACGT-GTCGGACAAGCAGGACCTGCTGTCGAGGTTTCTCGCCGCTGGCCACGG-G 927 ||| || | | || | | ||| || || ||||||||||||| ||||| |||||| | Sbjct 813 TGGAGAAGAAG-CG-A-A-GCAAGATCTTTTGTCGAGGTTTCTAGCCGCCGGCCACAACG 868 Query 928 GAAGAAGCCGTGAGGGATAGTG-TAATCAGCTTTATTATGGCGGGAAGGGATACAACGTC 986 | ||||| |||||||| | || | || || ||||| ||||||||||| ||||| ||||| Sbjct 869 GT-GAAGCAGTGAGGGACA-TGGTTATTAGTTTTATCATGGCGGGAAGAGATACGACGTC 926 Query 987 GGCAGCGATGACGTGGCTGTTTTGGTTGTTGAGTCAAAATGATGACGTGGAGACGAAGAT 1046 ||||||||||||||||||||||||||||||| | | || ||||||||||||| |||||| Sbjct 927 AGCAGCGATGACGTGGCTGTTTTGGTTGTTGACTGAGAACGATGACGTGGAGAGGAAGAT 986 Query 1047 ACTCGACGAA-TTGAGAAACAAAGGGTC-TTTAGGGTTAGGGTTTGAGGATTTGAGAGAG 1104 | || ||| |||| | || | |||||||||||||||||||||||| | |||| Sbjct 987 TTTAGAAGAAGTTGACC--CGTTGGTTAGTTTAGGGTTAGGGTTTGAGGATTTAAAAGAG 1044 Query 1105 ATGAGTTACACAAAAGCTTGTCTGTGTGAAGCAATGAGGCTTTACCCACCAGTGGCTTGG 1164 |||| ||| ||||| |||||||| |||||||| ||||||||||| || |||||| | ||| Sbjct 1045 ATGAATTATACAAAGGCTTGTCTATGTGAAGCCATGAGGCTTTATCCTCCAGTGTCGTGG 1104 Query 1165 GACTCAAAGCATGCAGCAAACGACGACATTTTGCCAGATGGAACACCTCTCAAAA-AGGG 1223 ||||| |||||||| |||||||||||| |||| ||||| || |||| | | || | ||| Sbjct 1105 GACTCTAAGCATGCTGCAAACGACGACGTTTTACCAGACGGGACACGTGTGAAGAGAGG- 1163 Query 1224 AGACAAAGTCACTTATTTCCCTTACGGTATGGGAAGGATGGAGAAGGTGTGGGGTAAAGA 1283 |||||| || ||||||||||| ||||||||||| |||||||||| | | ||||| | || Sbjct 1164 AGACAAGGTGACTTATTTCCCATACGGTATGGGGAGGATGGAGACGTTATGGGGCACGGA 1223 Query 1284 TTGGGACGAGTTTAAACCAAACCGGTGGTTTGAGGAAGAACCGAGTTACGGTACAAAACC 1343 || || |||||||||||||||||||||||||| |||||| || | | |||| ||| Sbjct 1224 TTCAGAAGAGTTTAAACCAAACCGGTGGTTTGATTCTGAACCGGGT-A-G-TACACGACC 1280 Query 1344 GGTTTTGAAAAGTGTGAGTTCGTT-CAAGTTTCCGGTTTTCCAAGCCGGACCAAGGGTTT 1402 |||||||||| | ||| | || ||| ||||||||||| ||||||||||| ||||||| Sbjct 1281 GGTTTTGAAACCCATTAGTCC-TTACAAATTTCCGGTTTTTCAAGCCGGACCGAGGGTTT 1339 Query 1403 GCATAGGTAAAGAA-ATGGCTTTTACACAAATGAAATACGTGGTTGGTTCAGTTTTGAGT 1461 | |||| |||| | ||||| |||| || |||||||||||||||||||| ||||||||| Sbjct 1340 GTGTAGG-AAAGGAGATGGCGTTTATGCAGATGAAATACGTGGTTGGTTCTGTTTTGAGT 1398 Query 1462 CGGTTTAAGATTATACCGGTTTGCAATA-ACCGGCCGGTCTTTGTTCCTCTTCTAACCGC 1520 |||||| |||||||||||||| | || |||||||||| |||||||||||| |||| || Sbjct 1399 CGGTTTGAGATTATACCGGTTAACC-TAGACCGGCCGGTTTTTGTTCCTCTTTTAACGGC 1457 Query 1521 TCACATGGCTGGTGGGCTAAAGGTGAAGATCAAGAGGAGA 1560 || |||||||||||||| ||||||||||||||||| ||| Sbjct 1458 ACATATGGCTGGTGGGCTCAAGGTGAAGATCAAGAGAAGA 1497 > Ahg927566 jgi|Araly1|927566|scaffold_300023.1 Length=1538 Score = 106 bits (57), Expect = 6e-22 Identities = 139/176 (79%), Gaps = 15/176 (9%) Strand=Plus/Plus Query 1237 TATTTCCCTTACGGTATGGGAAGGATGGAGAAG-GTGTGGGGTAAAGATTGGGACGAGTT 1295 ||||| || || |||||||| || |||||| || | ||||| |||||||||| ||||| Sbjct 1170 TATTTTCCATATGGTATGGGGAGAATGGAGGAGCAT-TGGGGGGAAGATTGGGATGAGTT 1228 Query 1296 TAAACCAAACCGGTGGTTTGAGGAAGAACCGAGTTACGGTACAAA---AC--C-G-GTTT 1348 |||||||||||||||| |||| | || || || | || ||| | | | |||| Sbjct 1229 TAAACCAAACCGGTGGGTTGATG-AG--TCGTCCTATGATA-AAACCTGCTGCAGAGTTT 1284 Query 1349 TG-AAAAGTGTGAGTTCGTTCAAGTTTCCGGTTTTCCAAGCCGGACCAAGGGTTTG 1403 || ||||| |||| | |||||||||||||||||||||||||||| ||||||||||| Sbjct 1285 TGAAAAAG-GTGAATCCGTTCAAGTTTCCGGTTTTCCAAGCCGGCCCAAGGGTTTG 1339 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62963174985 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5