BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G63460.4

Length=872
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951147 jgi|Araly1|951147|scaffold_803034.1                        584    3e-166


> Ahg951147 jgi|Araly1|951147|scaffold_803034.1
Length=533

 Score =  584 bits (316),  Expect = 3e-166
 Identities = 334/343 (97%), Gaps = 0/343 (0%)
 Strand=Plus/Plus

Query  307  AAGGACAGCTTATCAAAACAAACCAGCAAAATATACTAATCAGATCTCTCTTGTTAAAGA  366
            ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  185  AAGGACAGCATATCAAAACAAACCAGCAAAATATACTAATTAGATCTCTCTTGTTAAAGA  244

Query  367  AGCAAAAAGGCGAATCTAGTTCTAAAGACTCAAAAGGAACTGCTGAAGATGGTCCTAAAA  426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  245  AGCAAAAAGGCGAATCTAGTTCTAAAGACTCAAAAGGAACTGCTGAAGATGGTCCTAAAA  304

Query  427  AGAGGGCTGCAAATAGAGCTCTGGACGACAGAAGCTCAGCTAAAAGAGCTGCTAATGCAT  486
            |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct  305  AGAGGGCTGCAAATAGGGCTCTAGACGACAGAAGCTCAGCTAAAAGAGCTGCTAATGCAT  364

Query  487  CTAGACAAGAAGGATCAAGCAGTCGCACAGGCGAAAGAGACTTTCAGTCTTTGACCGTTG  546
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct  365  CTAGACAAGAAGGATCAAGCAGTCGCACTGGCGAAAGAGACTTTCAGTCTTTGACAGTTG  424

Query  547  AGAAGCTCCGCGCCATGCTCAAGGAGAAGGGCCTTCCAACAAAAGGAAGAAAGGATGAGC  606
            |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  425  AGAAGCTCCGTGCCCTGCTCAAGGAGAAGGGCCTTCCAACAAAAGGAAGAAAGGATGAGC  484

Query  607  TCATTGCGCGTCTGAAGAGTGCCAACTGAAATGAAGTTGAGAA  649
            |||||||||||||||||||||||||||||||| ||||||||||
Sbjct  485  TCATTGCGCGTCTGAAGAGTGCCAACTGAAATCAAGTTGAGAA  527


 Score =  296 bits (160),  Expect = 2e-79
 Identities = 176/184 (96%), Gaps = 0/184 (0%)
 Strand=Plus/Plus

Query  87   CTAGGGTTTATCAGTGGTTTGTCAATGGAGGCTTCATCATCTCAACCATCCGATTCTTCT  146
            |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  1    CTAGGGTTTATCAGTGGTTTGTCAATGGAGGCTTCATCGTCTCAGCCATCCGATTCTTCT  60

Query  147  GATCAAACTGCTTCCAAGTTCCTTTCTGACCTCCCGTCTCGAGGTTTCTTGTCTTCTACC  206
            || ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct  61   GACCAAACTGCTTCTAAGTTCCTATCTGACCTCCCGTCTCGCGGTTTCTTGTCTTCTACC  120

Query  207  GTCGTCTCTTCCAATCCGGGAAGCTTGCGGGTCTACATTTGTGAGCATGACACATCTCCC  266
            || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  121  GTTGTCTCTTCCAATCCGGGAAGCATGCGGGTCTACATTTGTGAGCATGACACATCTCCC  180

Query  267  CCAG  270
            ||||
Sbjct  181  CCAG  184



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32290110699


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5