BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63470.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496533 jgi|Araly1|496533|fgenesh2_kg.8__2349__AT5G63470.1 1256 0.0
Ahg485217 jgi|Araly1|485217|fgenesh2_kg.5__1209__AT3G48590.1 652 0.0
Ahg474760 jgi|Araly1|474760|fgenesh2_kg.1__4714__AT1G54830.1 187 1e-46
> Ahg496533 jgi|Araly1|496533|fgenesh2_kg.8__2349__AT5G63470.1
Length=887
Score = 1256 bits (680), Expect = 0.0
Identities = 768/808 (95%), Gaps = 15/808 (2%)
Strand=Plus/Plus
Query 4 GCAAAGATCCAATGGACAATaacaacaacaacaacaaccagcaaccaccaccaaccTCCG 63
||| |||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 1 GCATAGATCCAATGGACAAT---AACAACAACAACAACCAACCACCACCACCAACCTCCG 57
Query 64 TCTATCCACCTGGCTCCGCCGTCACAACCGTAATCCCTCCTCCACCATCTGGATCT-GCA 122
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| | |
Sbjct 58 TCTATCCACCTGGCTCCGCCGGCACAACCGTAATCCCTCCTCCTCCATCTGGATCTAG-A 116
Query 123 TCAATAGTCACCGGAGGAGGAGCGACATACCACCACCTCCTCCAGCAACAACAGCAACAG 182
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 117 TCTATAGTGACCGGAGGAGGAGCGACGTACCACCACCTCCTCCAGCAACAACAACAACAG 176
Query 183 CTTCAAATGTTCTGGACATACCAGAGACAAGAGATCGAACAGGTAAACGATTTCAAAAAC 242
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 177 CTTCAAATGTTCTGGAAATACCAGAGGCAAGAGATCGAACAGGTAAACGATTTCAAAAAC 236
Query 243 CATCAGCTCCCTCTAGCTCGTATCaaaaaaaTCATGAAAGCTGATGAAGATGTGCGTATG 302
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 237 CATCAGCTTCCTCTAGCTCGGATCAAAAAAATCATGAAAGCTGATGAAGATGTGCGTATG 296
Query 303 ATCTCCGCCGAAGCACCGATTCTCTTCGCGAAAGCTTGTGAGCTTTTCATTCTCGAACTT 362
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 297 ATCTCCGCCGAAGCACCGATTCTCTTCGCCAAAGCTTGTGAGCTTTTCATTCTCGAGCTT 356
Query 363 ACGATTAGATCTTGGCTTCACGCTGAAGAGAACAAACGTCGTACGCTTCAGAAAAACGAT 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACGATTAGATCTTGGCTTCACGCTGAAGAGAACAAACGTCGTACGCTTCAGAAAAACGAT 416
Query 423 ATCGCTGCTGCGATTACTAGAACCGATATCTTCGATTTCCTTGTTGATATTGTTCCTAGG 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ATCGCTGCTGCGATTACTAGAACCGATATCTTCGATTTCCTTGTTGATATTGTTCCTAGG 476
Query 483 GAAGAGATCAAGGAAGAGGAAGATGCAGCATCGGC---TCTTGGTGGAGGAGGTATGGTT 539
|||||||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct 477 GAAGAGATCAAGGAAGAGGAAGATGCTGCGGCGGCGGCTCTTGGTGGAGGAGGTATGGTT 536
Query 540 GCTCCCGCCGCGAGCGGTGTTCCTTATTATTATCCACCGATGGGACAACCGGCGGTTCCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GCTCCCGCCGCGAGCGGTGTTCCTTATTATTATCCACCGATGGGACAACCGGCGGTTCCT 596
Query 600 GGAGGGATGATGATTGGAAGACCGGCGATGGATCCTAGCGGTGTTTATGCTCAGCCTCCT 659
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GGAGGGATGATGATCGGAAGACCGGCGATGGATCCTAGCGGTGTTTATGCTCAGCCTCCT 656
Query 660 TCTCAGGCATGGCAAAGCGTTTGGCAGAATTCAGCTGGTGGTGGTGATGATGTGTCTTAT 719
||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 657 TCTCAGGCATGGCAAAGCGTTTGGCAGAATTCAGCTGGTGGTG---ATGACGTGTCATAT 713
Query 720 GGAAGTGGAGGAAGTAGCGGCCATGGTAATCTCGATAGCCAAGGTT--G--AGCTATGGA 775
|||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct 714 GGAAGTGGAGGAAGTAGCGGCCATGGAAATCTCGATAGCCAAGGTTAAGTGAGCTATGGA 773
Query 776 ACCAGAAGCTTAGAGATTTAATCATCAT 803
|||||||||| |||| || |||||||||
Sbjct 774 ACCAGAAGCTGAGAGGTTAAATCATCAT 801
Score = 78.7 bits (42), Expect = 8e-14
Identities = 52/56 (93%), Gaps = 3/56 (5%)
Strand=Plus/Plus
Query 913 CTGTTAAC-T-TA-TAAGTTATTGCAGCAAAACTGCAGACTTGCTTAACTATATAT 965
|||||||| | || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 832 CTGTTAACTTATACTAAGTTATTGCAGCAAAACTGCAGACTTACTTAACTATATAT 887
> Ahg485217 jgi|Araly1|485217|fgenesh2_kg.5__1209__AT3G48590.1
Length=916
Score = 652 bits (353), Expect = 0.0
Identities = 556/651 (85%), Gaps = 25/651 (4%)
Strand=Plus/Plus
Query 91 CCGTAATCCCTCCTCCACCATCTGG-ATCTGCATCAAT-AGTCACCGGAGGAGGAGCGAC 148
||| |||||||||||| ||| |||| | | |||| | | | ||||||||||||| |
Sbjct 56 CCGGAATCCCTCCTCCTCCACCTGGAACCACCATC--TCCGCCGCCGGAGGAGGAGCTTC 113
Query 149 ATACCACCACCTCCTCCAGCAACAACAGCAACAGCTTCAAATGTTCTGGACATACCAGA- 207
||||||||||| ||||| |||||||| |||||||| ||| | |||||||| ||||| |
Sbjct 114 TTACCACCACCTTCTCCAACAACAACAACAACAGCTCCAACTATTCTGGACCTACCA-AC 172
Query 208 GACAAGAGATCGAACAGGTAAACGATTTCAAAAACCATCAGCTCCCTCTAGCTCGTATCa 267
| |||||||||||||| || ||||||||||||||||||||||| || |||||||| ||||
Sbjct 173 GCCAAGAGATCGAACAAGTTAACGATTTCAAAAACCATCAGCTTCCACTAGCTCGGATCA 232
Query 268 aaaaaaTCATGAAAGCTGATGAAGATGTGCGTATGATCTCCGCCGAAGCACCGATTCTCT 327
|||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 233 AAAAGATCATGAAAGCCGATGAAGATGTTCGTATGATCTCCGCAGAAGCACCGATTCTCT 292
Query 328 TCGCGAAAGCTTGTGAGCTTTTCATTCTCGAACTTACGATTAGATCTTGGCTTCACGCTG 387
|||| |||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 293 TCGCCAAAGCTTGTGAGCTTTTCATTCTCGAGCTCACGATCAGATCTTGGCTTCACGCTG 352
Query 388 AAGAGAACAAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCGATTACTAGAACCG 447
| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 353 AGGAGAATAAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCTATTACTAGGACCG 412
Query 448 ATATCTTCGATTTCCTTGTTGATATTGTTCCTAGGGAAGAGATCAAGGAAGAGGAAGATG 507
|||||||||||||||||||||||||||||||||| || ||||| ||||| |||| | |
Sbjct 413 ATATCTTCGATTTCCTTGTTGATATTGTTCCTAGAGATGAGATTAAGGACGAGGCCGCCG 472
Query 508 CAGCATCGGCTCTTGGTGGAGGA-GGTATGGTTGCTCCCGCCGCGAGCGGTGTTCCTTAT 566
|| | ||| ||||| | | ||| ||| |||||| |||||||||| || |||||
Sbjct 473 T-GC-TGGGC----GGTGG-G-ATGGT--GGTGGCTCCCACCGCGAGCGGCGTGCCTTAC 522
Query 567 TATTATCCACCGATGGGACAACCGGC-GGTTCCTGGAGGGATGATGATTGGAAGACCGGC 625
|||||||| |||||||||||||| || ||| |||||||||||||||||||| ||||| ||
Sbjct 523 TATTATCCGCCGATGGGACAACCAGCTGGT-CCTGGAGGGATGATGATTGGGAGACCAGC 581
Query 626 GATGGATCCTAGCGGTGTTTATGCT-CAGCCTCCTTCTCAGGCATGGCAAAGCGTTTGGC 684
|||||||| || |||||||||| | |||||||| |||||||| ||||| ||||| ||||
Sbjct 582 TATGGATCCGAGTGGTGTTTATG-TGCAGCCTCCGTCTCAGGCGTGGCAGAGCGTATGGC 640
Query 685 AGAATTCAGCTGGTGG--TGGTGATGATGTGTCTTATGGAAGTGGAGGAAG 733
||| ||| || || || ||| |||||||| ||||| || ||||| |||||
Sbjct 641 AGACTTCGGC-GG-GGACTGGAGATGATGTCTCTTACGGCAGTGGTGGAAG 689
> Ahg474760 jgi|Araly1|474760|fgenesh2_kg.1__4714__AT1G54830.1
Length=865
Score = 187 bits (101), Expect = 1e-46
Identities = 206/255 (81%), Gaps = 14/255 (5%)
Strand=Plus/Plus
Query 231 GATTTCAAAAACCATCAG-C-TCCCTCTAGCTCGTATCaaaaaaaTCATGAAAGCTGATG 288
|||||||| |||||| || | ||| | | || | ||||| || ||||||||||||||||
Sbjct 388 GATTTCAAGAACCAT-AGCCTTCCAT-TGGCGAGAATCAAGAAGATCATGAAAGCTGATG 445
Query 289 AAGATGTGCGTATGATCTCCGCCGAAGCACC-GATTCTCTTCGCGAAAGCTTGTGAGCT- 346
||||||||||||||||||| ||||| || || | || | ||||| | ||||||||| |
Sbjct 446 AAGATGTGCGTATGATCTCGGCCGAGGCGCCTG-TTGTGTTCGCTAGGGCTTGTGAGATG 504
Query 347 TTTCATTCTCGAACTTACGATT-AGATCTTGGCTTCACGCTGAAGAGAACAAACGTCGTA 405
||| ||||| || |||||| || || |||||| ||| |||| ||||||||| | | |
Sbjct 505 TTT-ATTCTGGAGCTTACG-TTGAGGTCTTGGAACCACACTGAGGAGAACAAAAGGAGGA 562
Query 406 CGCTT-CAGAAAAACGATATCGCTGCTGC-GATTACTAGAACCGATATCTTCGATTTCCT 463
|| || ||||| ||||||||||| ||||| | | |||||||| |||||||| ||||||||
Sbjct 563 CG-TTGCAGAAGAACGATATCGCGGCTGCTG-TGACTAGAACTGATATCTTTGATTTCCT 620
Query 464 TGTTGATATTGTTCC 478
||| |||||||||||
Sbjct 621 TGTGGATATTGTTCC 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5