BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63480.1
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496535 jgi|Araly1|496535|fgenesh2_kg.8__2351__AT5G63480.1 1099 0.0
Ahg496536 jgi|Araly1|496536|fgenesh2_kg.8__2352__AT5G63490.1 52.8 4e-06
> Ahg496535 jgi|Araly1|496535|fgenesh2_kg.8__2351__AT5G63480.1
Length=763
Score = 1099 bits (595), Expect = 0.0
Identities = 695/743 (94%), Gaps = 7/743 (1%)
Strand=Plus/Plus
Query 3 CGTATTAATAGTTTAGTCAACCGACGCCGTGATAAAGTGTGTTCACGGTGATGCTGCAGA 62
||||||||||||| ||| || |||||||||||||| | |||||||| ||| || | |||
Sbjct 1 CGTATTAATAGTTGAGT-AAACGACGCCGTGATAAGGCGTGTTCACTGTGCTGGAGAAGA 59
Query 63 AACAGGTCTcgacgacgacgacgatgacgacACAGGAGCTAGCGATGGAAGGAGAGAAGC 122
||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AACAGGTTTCGA--A-GACGACGATGACGACACAGGAGCTAGCGATGGAAGGAGAGAAGC 116
Query 123 AATTGGAAGAAACTATTGAAGCGGCGTTTCAGATAATTTCAGCCATGAATGATGAGCTTT 182
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ATTTGGAAGAAACTATTGAAGCGGCGTTTCAGATAATTTCAGCCATGAATGATGAGCTTT 176
Query 183 GTAATCCGTCTTTGTGGTCTACTTCAGCTACCCCGAGTTCCGCCGCGACGACGACGGGTT 242
||||||| || || |||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 177 GTAATCCTTCCTTATGGTCTACATCAGCTACCCCGAGTTCCGCCGCGACGGCGACGGGTT 236
Query 243 CTAATGGTTCGGCTCTCGTTTCCGCCGATGCGGCTGCGATTGATGGAACATCGCATCATT 302
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 237 CTAATGGTTCGGCTCTCGTTTCTGTCGATGCGGCTGCGATTGATGGAACATCGCATCATT 296
Query 303 CGGAATCTGCTGGTGGTGGCGGGGGCGGAGGAAGTGGAAATAGTGTTTTGGATGAGGCGA 362
||||||||| ||||||||| || ||||||||||| || ||||||||||||||||||||||
Sbjct 297 CGGAATCTGGTGGTGGTGGTGGCGGCGGAGGAAGCGGGAATAGTGTTTTGGATGAGGCGA 356
Query 363 GTCTTCGGTATAAGAACTCAGTGACTTCGCTTCGTGCTGTTCTTGCTGCGATTCCAAATT 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GTCTTCGGTATAAGAACTCAGTGACTTCGCTTCGTGCTGTTCTTGCTGCGATTCCAAATT 416
Query 423 CGCAGAAGGCAAAAGCATCTGAAATGCAAAATGGTTTAGGATCTCCTGAAAGTGAAGACG 482
|||| ||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 417 CGCACAAGGCAAAAGCATCTGAGACGGAAAATGGTTTAGGATCTCCTGAAAGTGAAGACG 476
Query 483 AGATCGAAAAATTGGAGGAGCAAGCCTTAAGTCTCAGAATGGAGATTGCAAAGAAGAATG 542
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAATCGAATTGTTGGAGGAGCAAGCCTTAAGTCTCAGAATGGAGATTGCAAAGAAGAATG 536
Query 543 TTCATGTTAAAGAACTTATAGATAAACTTCGGGAACTTATAGCAGATATCTCTACATGGC 602
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTCATGTCAAAGAACTTATCGATAAACTTCGGGAACTTATAGCAGATATCTCTACATGGC 596
Query 603 AAAGCCCTTGTTCTGTTTGAGTTTTAtttttttGACAATAGTGAGATCAGTTTAGACAAA 662
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 597 AAAGCCCTTGTTCTGTTTGAGTTTGATTTTTTTGACAATAGTGAGATCAGTTTAGACAAA 656
Query 663 GATTCTAAGCCTTGTTCTTGAATTACTCC---ATGTATTAGTTTTAGATATTTGTTATTT 719
||||| ||| |||||||||||||| ||| |||| ||||||||||||||||||| |||
Sbjct 657 GATTCAAAGTCTTGTTCTTGAATTCCTCATTGATGTCTTAGTTTTAGATATTTGTTGTTT 716
Query 720 TGATATCATGAAGCCaaaaaaaT 742
||||||||||||||| |||||||
Sbjct 717 TGATATCATGAAGCCTAAAAAAT 739
> Ahg496536 jgi|Araly1|496536|fgenesh2_kg.8__2352__AT5G63490.1
Length=1785
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 757 TTTGTATATAAAAATATTTCAGACAAAA 784
||||||||||||||||||||||||||||
Sbjct 1785 TTTGTATATAAAAATATTTCAGACAAAA 1758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28935294003
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5