BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63490.1
Length=1807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496536 jgi|Araly1|496536|fgenesh2_kg.8__2352__AT5G63490.1 2939 0.0
Ahg331457 jgi|Araly1|331457|fgenesh1_pm.C_scaffold_8000800 571 5e-162
> Ahg496536 jgi|Araly1|496536|fgenesh2_kg.8__2352__AT5G63490.1
Length=1785
Score = 2939 bits (1591), Expect = 0.0
Identities = 1724/1787 (96%), Gaps = 13/1787 (1%)
Strand=Plus/Plus
Query 18 AATCCATTTGTTGACCCGACGAA-TCCGCCTGTAGATATGGCTAGCCAAGGCGGG-C--C 73
||||||||||||||||||||||| | || ||||||| |||||||||||||||||| | |
Sbjct 1 AATCCATTTGTTGACCCGACGAATTTCGTCTGTAGAAATGGCTAGCCAAGGCGGGTCATC 60
Query 74 AAGACGGAGCTTATCCGTTACGACTGCGTCATTGCACGGAAAGAAGAAATCCATGGATAT 133
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGACGGAGCTTATCTGTTACGACTGCGTCATTGCACGGAAAGAAGAAATCCATGGATAT 120
Query 134 -GGCCGAACGAGGTCTCGATACTGGCCGGAGATCTCTTACTGTTTCTCGTTCTCCTTTGG 192
|| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGG-TGAACGAGGTCCCGACACTGGCCGGAGATCTCTTACTGTTTCTCGTTCTCCTTTGG 179
Query 193 GTTTAACAGGAGGCGAGCGGACTGTGAAACGGTTAAGGCTATCGAAAGCACTTACAGTAC 252
||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||
Sbjct 180 GTTTAACAGGAGGCGAGCGAACTGTTAAACGGTTAAGGCTTTCGAAAGCTCTTACAGTAC 239
Query 253 CAGCAACAACAACTATATATGAAGCTTGTAAAAGGATGGCTTCACGACGAGTTGATGCCT 312
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 CAGCAACAACAACTATTTATGAAGCTTGTAAAAGGATGGCTTCACGACGAGTTGATGCTT 299
Query 313 TGTTGTTGACTGACTCTAATGAAATGCTTTGTGGTATTCTTACTGATAAGGACATAGCTA 372
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 300 TGTTGTTGACTGACTCTAATGAAATGCTCTGTGGGATTCTTACTGATAAGGACATAGCTA 359
Query 373 CAAGAGTGATTTCACAGGAACTTAATGTCGAGGAAACACCTGTATCTAAGGTTATGACGA 432
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 360 CAAGAGTGATTTCACAGGAAGTTAATGTCGAGGAAACACCTGTATCCAAGGTTATGACGA 419
Query 433 AGAACCCAATGTTTGTTCTCTCAGAAACACTTGCTGTTGAAGCTCTCCAAAAGATGGTCC 492
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 420 AGAACCCAATGTTTGTTCTCTCTGAAACACTTGCTGTTGAAGCCCTCCAAAAGATGGTCC 479
Query 493 AAGGAAAATTCAGACATTTGCCGGTTGTTGAAAATGGCGAAGTTATTGCTTTATTAGATA 552
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 AAGGAAAATTCAGATATCTGCCTGTTGTTGAAAATGGCGAAGTTATTGCTTTATTAGATA 539
Query 553 TAGCAAAGTGTTTGTATGATGCAATTGCTCGTATGGAGAGGGCTGCTGAGAAAGGTAAGG 612
||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 540 TAGCAAAGTGTCTGTATGATGCGATTGCTCGTATGGAGAGGGCAGCTGAGAAAGGTAAGG 599
Query 613 CAATAGCTGCTGCTGTTGAAGGTGTTGAAAAAAGTTGGGGGACAAACACTTCAGTTCCCA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAATAGCTGCTGCTGTTGAAGGTGTTGAAAAAAGTTGGGGGACAAACACTTCAGTTCCCA 659
Query 673 ACACTTTTATTGAAACGCTACGAGACCGGATGTTTAGACCTTCTTTATCAACAATTATAC 732
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACACTTTCATTGAAACGCTACGAGACCGGATGTTTAGACCTTCTTTATCAACAATTATAC 719
Query 733 CAGATGATACAAAGGTTTTGAAAGTCTCACCAACTGACACAGTGTTGACTGTAGCAAAGA 792
||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||
Sbjct 720 CAGATGATACAAAGGTTCTGAAAGTCTCACCGACAGACACAGTGTTGACTGTAGCAAAGA 779
Query 793 AGATGGTTGAATTCCAATCAAGCTGTGCAGTCGTGATAATCGAGGACAAGCTTCGAGGGA 852
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGATGGTTGAATTTCAATCAAGCTGTGCAGTCGTGATAATCGAGGACAAGCTTCGAGGGA 839
Query 853 TATTTACTTCCAAGGATATACTGATGCGGGTTGTGGCTGAAAATCTTCCTCCATCTGAGA 912
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 TATTTACTTCCAAGGATATACTGATGCGGGTTGTGGCTGAAAATCTTTCTCCATCTGAGA 899
Query 913 CTCTAGTGGAAACGGTTATGACTCAGAATCCAGAATCTACGATAGTTGACACACCAATTG 972
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 900 CTCTAGTGGAAACGGTTATGACTCAAAATCCAGAATCTACGATAGTTGACACACCAATTG 959
Query 973 TTGAAGCTCTACACATCATGCACGAGGGAAAATTCTTACACCTTCCCGTTACTGACAAAG 1032
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTGAAGCTCTGCACATCATGCACGAGGGAAAATTCTTACACCTTCCCGTTACTGACAAAG 1019
Query 1033 AAGGAGATGTAGTTGCTGTTGTCGATGTAATCCATGTCACTCACGCTGCTGTTGCCACAG 1092
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1020 AAGGAGATGTAGTTGCAGTTGTCGATGTAATCCATGTCACTCACGCGGCTGTTGCCACAG 1079
Query 1093 CTGGAACTACTGCGGGAATAGGTAATGAGGCGACAAACACAATGATGCAAAAGTTTTGGG 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CTGGAACTACTGCGGGAATAGGTAATGAGGCGACAAACACAATGATGCAAAAGTTTTGGG 1139
Query 1153 ATTCAGCTATGGCATTGTCTCCTAATGAGGACGATGAGGACTCGAGAAGTGAGAGCTCCA 1212
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATTCAGCAATGGCATTGTCTCCTAATGAGGACGATGAGGACTCGAGAAGTGAGAGCTCCA 1199
Query 1213 TGAAGGTTGCTTCCGAAGCTGAGACAGGAAAATCTTTCCCTTTTGCAAATACATTTTCTT 1272
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1200 TGAAAGTTGCTTCCGAAGCTGAGACAGGAAAATCTTTCCCTTTTGCAAATACATTTTCGT 1259
Query 1273 TCAAAATTGAAGACAAAAAGCACAGGAAACACAGATTCATAAGCGACACTCGGAGTTTGA 1332
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1260 TCAAGATTGAAGACAAAAAGCACAGAAAACACAGATTCATAAGCGACACTCGGAGTTTGA 1319
Query 1333 CAGAGGTGATAACCGCGATCATTCAGAGGGTAGGGGATGATATCGATCCAGATAACTTCC 1392
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1320 CAGAGGTGATAACCGCGATCATTCAGAGGGTAGGGGATGATATCGATCCAGATAACTTAC 1379
Query 1393 CCCAAATTTTGTATGAAGATGAAGACCACGATAAAGTGTTGTTGGCTTCAGATAGTGACC 1452
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1380 CCCAAATTTTGTATGAAGACGAAGACCATGATAAAGTGTTGTTGGCTTCAGATAGTGACC 1439
Query 1453 TTCAAGCAGCCATAGAGCATGCAAAATCAATTGGCTGGAAGAGTCTGAGATTACATTTGG 1512
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1440 TTCAAGCAGCCATAGAACATGCAAAATCAATTGGCTGGAAGAGTCTCAGATTACATTTGG 1499
Query 1513 ATGATTCAAGAGAAGGCAAAGGAAGAAGAAGGAGAAGAGCATCAGGATCAGCAGAATCAA 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 ATGATTCAAGAGAAGGCAAAGGAAGAAGAAGGAGAAGAGCATCAGGATCAGCAGAATCAA 1559
Query 1573 TGGAGTATGTAGAGACAGACGCTTGGGCTGCTGCTTATAGTGGAGTTGCGGCTGGTGCAG 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TGGAGTATGTAGAGACAGACGCTTGGGCTGCTGCTTATAGTGGAGTTGCGGCTGGTGCAG 1619
Query 1633 CATTAGTAGCTGGTCTTGGTTTTATGGCTTTTCTCAGAAAATTCGGTCATTGATTCCTCA 1692
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1620 CATTAGTAGCTGGTCTTGGTTTTATGGCCTTTCTCAGAAAATTCGGTCATTGATTCCTCA 1679
Query 1693 GAAA-CACTACAAGAAGTGTTTCTTTAACAGATCAATACAAACaaaaaa-----gaaaaa 1746
||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1680 -AAATCACTACAAAAAGTGTTTCTTTAACAGAACAATACAAACAAAAAAAAAAAGAAAAA 1738
Query 1747 CAGACACAGGGTTTGAAGGTTTTGTCTGAAATATTTTTATATACAAA 1793
||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1739 CAGACACAGATTTTGAAGGTTTTGTCTGAAATATTTTTATATACAAA 1785
> Ahg331457 jgi|Araly1|331457|fgenesh1_pm.C_scaffold_8000800
Length=1647
Score = 571 bits (309), Expect = 5e-162
Identities = 1001/1323 (76%), Gaps = 95/1323 (7%)
Strand=Plus/Plus
Query 240 GCACTTACAGTACCAGCA-A-CAACAACTATATATGAAGCTTGTAAAAGGATGGCTTCAC 297
|||||||| ||||| | | | | |||||| ||| |||||||||| ||| |||||| |||
Sbjct 211 GCACTTACTGTACCCG-ATAGC-ACAACTTTATTTGAAGCTTGTCGAAGAATGGCTGCAC 268
Query 298 GACGAGTTGATGC-CTTGTTGTTGACTGACTCTAATGAAATGCTTTGTGGTATTCTTACT 356
| || |||||||| | | ||| ||||||| || |||| | | || ||||| || |||||
Sbjct 269 GTCGCGTTGATGCGC-TATTGCTGACTGATTCCAATGCATTACTCTGTGGGATCCTTACA 327
Query 357 GATAAGGACATAGCTAC-AAGAGTGATTTC-ACAGGAACTTAATGTCGAGGAAACACCTG 414
|| | ||| ||||| || || ||||||| | | | ||||||| | || ||||||||||
Sbjct 328 GACAGGGATATAGCAACGAA-AGTGATTGCTA-AACAACTTAACCTTGAAGAAACACCTG 385
Query 415 TATCTAAGGTTATGACGAAGAACCCAATGTTTGTTCTCTCAGAAAC-ACTTGCTGTTGAA 473
||||||| |||||||| |||||||| | |||||| | || || || | ||||||| |||
Sbjct 386 TATCTAAAGTTATGACCAAGAACCCTGTTTTTGTTTTGTCTGATACTA-TTGCTGTGGAA 444
Query 474 GCTCTCCAAAAGATGGTCCAAGGAAAATTCAGACATTTGCCGGTTGTTGAAAATGGCGAA 533
||||| ||||||||||| ||||| ||||| |||||||||||||| || || ||||| |||
Sbjct 445 GCTCTTCAAAAGATGGTGCAAGGCAAATTTAGACATTTGCCGGTGGTGGAGAATGGAGAA 504
Query 534 GTTATTGC-TTTATTAGATATAGCAAAGTGTTTGTATGATGCAATTGCTCGTATGGAGAG 592
|||||||| || | ||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 505 GTTATTGCGCTT-CTCGATATTGCAAAGTGTTTGTATGATGCAATTGCTCGCATGGAAAG 563
Query 593 GGCTGCTGAGAAAGGTAAGGCAATAGCTGCTGCTGTTGAAGGTGTTGAAAA-AAGTTGGG 651
| | |||||| |||||||| || ||||| ||||||||||| |||||||| || | |||
Sbjct 564 ATCAGTTGAGAAGGGTAAGGCTATTGCTGCAGCTGTTGAAGGCGTTGAAAAGAACT-GGG 622
Query 652 GGACAAAC-ACTT-CAGTTCCCAACACTTTTATTGAAACGCT-ACGAGACCGGATGT-TT 707
| ||| | | || ||| || ||||||||||| || || || | |||| || | || ||
Sbjct 623 GAACAT-CTA-TTGCAGGACCAAACACTTTTATGGAGACACTTA-GAGAACG-A-GTATT 677
Query 708 -A-GACCTTCT-TTATCAACAATTATACCAGATGA-TACAAAGGTTTTGAAAG-TCTC-A 761
| | ||||| || ||||| || || ||||| || |||||||||||| |||| | | |
Sbjct 678 CAAG-CCTTCACTT-TCAACTATAATTCCAGA-GAATACAAAGGTTTT-AAAGGT-TGGA 732
Query 762 CCA-ACTGACACAGTGTT-G-ACTGTAGCAAAGAAGATGGTTGAAT-TCCAATCAAGCTG 817
| ||| || ||||| | | ||| | | ||||||||| |||| || | || ||| |
Sbjct 733 TTGGA-TGATACTGTGTTAGGA--GTAACCATGAAGATGGTCGAATATC-AGTCTAGC-G 787
Query 818 T-GC-AGTCGTGATAATCGAGGACAAGCTTCG-AGGGATATTT-ACTTCCAAGGATATAC 873
|| | | ||||| | ||| |||| || | |||||| ||| || || ||||| || |
Sbjct 788 CAGCCA-TGGTGATGGTTGAGAACAAA-TTAGTAGGGAT-TTTGACATCAAAGGACAT-C 843
Query 874 T-GATGCGGGTTG-TGGCTGAAAATCTTCCTCCATCTGAGA-CT-CTAGTGGA-AACGGT 928
| ||||||||| | | | |||| ||||||| | || | || || ||||| || |||
Sbjct 844 TTGATGCGGGT-GATATCCCAAAACCTTCCTCAAGA-GACAACTACT-GTGGAGAA-GGT 899
Query 929 TATGACTCAGAATCCAGAATCTACGATAGTTGACACACCAATTGTTGAAGCTCTA-CACA 987
|||||| ||||||||||||||| | | |||||| | |||||||||| || || || |
Sbjct 900 TATGACACAGAATCCAGAATCTGCAACAGTTGATATGGCAATTGTTGATGC-CTTGCATA 958
Query 988 TCATGCACGAGGGAAAATT-CTTACACCTTCCCGTTACT-GACAAAGAAGGAGATGTAGT 1045
||||||| | |||||||| || || ||||| || | | || ||||| |||||||| ||
Sbjct 959 TCATGCATAATGGAAAATTTCTG-CATCTTCCTGT-ATTAGATAAAGATGGAGATGTTGT 1016
Query 1046 TGCTGTTG-TCGATGTAATCCATGTCACTCACGCTGCTGTTGCCACAGCTGGAACTACTG 1104
||||| | | ||||| ||||| | ||||| ||||||||| | || || |||| ||| |
Sbjct 1017 CGCTGT-GATTGATGTGATCCACATAACTCATGCTGCTGTTACTACGGCGGGAAGTACCG 1075
Query 1105 CGGGAATAGGTAATGAGGC-GACAAACACAATGATGCAAAAGTTTTGGGATTCAGCTATG 1163
| |||||| ||||||| | | ||||| ||||||||||||||||||||||||| || |||
Sbjct 1076 CTGGAATAAATAATGAGACAG-CAAACTCAATGATGCAAAAGTTTTGGGATTCTGCGATG 1134
Query 1164 GCATTGTCTCCTAATGAGGACGAT-GAGGACTCGAGAAGTGA-GA-GC-TCCATGAAGGT 1219
|| | || |||| ||| || || || || |||| ||||| || | || ||||| |
Sbjct 1135 GCGCTATCGCCTACTGAAGAT-ATAGATGAAACGAGGAGTGAAGAAGAATCGATGAAATT 1193
Query 1220 -TGCTTCCGAAGCTGAGACAGG-A-AAA-TCTTTCCCTTTTGCAAATACATTTTCTTTCA 1275
| |||| || | | ||| ||| | ||| || ||| | | | | || |||||| ||||||
Sbjct 1194 AT-CTTCGGA-GAT-AGA-AGGGACAAAATCATTCTCATATCCCAACACATTTGCTTTCA 1249
Query 1276 AAATTGAAGACAAAAAGC-ACAGGAAA-CACAGATTCATAAGCGACACTCGGAGTTTGAC 1333
|| | |||| |||||| || | || || ||||| || | || || | |||||||||
Sbjct 1250 AACTCCAAGATAAAAAGGGAC-G-AATGCATAGATTTATGTGTGAAACACAGAGTTTGAC 1307
Query 1334 AGAGG-TGATAACCGCGAT-CATTCAGAGGGTAGGGGATGATATCGATCCAGATAACTTC 1391
| | ||||||| || || | | || || | ||||||||||| || || ||||||||
Sbjct 1308 A-ACTCTGATAACAGCAATTC-TACAAAGAATGGGGGATGATATTGAGCCTGATAACTTG 1365
Query 1392 CCCCAAATTTTGTATGAAGATGAAGACCACGATAAAGT-GTTGTTGGCTTCAGATAGTGA 1450
|| ||||| |||| |||||||||||| | || ||||| ||| || || ||||||| |||
Sbjct 1366 CCTCAAATAATGTACGAAGATGAAGACAATGACAAAGTCGTT-TTAGCATCAGATAATGA 1424
Query 1451 CCTTCAAGCAGCCATAGAGCATGCAAAATCAATTGGCTGGAAGAGTCTGAGATTACATTT 1510
||| ||| ||| |||| || ||||||||||| ||||||||| || | | ||| |||||
Sbjct 1425 TCTTGGAGCTGCCGTAGAACACGCAAAATCAATAGGCTGGAAGGGTTTAAAATTGCATTT 1484
Query 1511 GGA 1513
|||
Sbjct 1485 GGA 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67838726345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5