BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63500.1
Length=385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951151 jgi|Araly1|951151|scaffold_803038.1 411 2e-114
> Ahg951151 jgi|Araly1|951151|scaffold_803038.1
Length=253
Score = 411 bits (222), Expect = 2e-114
Identities = 243/253 (96%), Gaps = 1/253 (0%)
Strand=Plus/Plus
Query 32 TCTCTCTTTAAGACAAGAAGTTATGGCGGATTGGGGCCCAGTGTTGATCGCCGTGATCCT 91
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTGTAAGACAAGAAGTTATGGCGGATTGGGGCCCAGTGTTGATCGCCGTGATCCT 60
Query 92 CTTCGTAGTTCTATCGCCGGGGCTTCTTTTCCAGATTCCGGCGGGAGGTCGAGTTGTCGA 151
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCGTAGTTCTATCGCCGGGACTTCTTTTCCAGATTCCGGCGGGAGGTCGAGTTGTCGA 120
Query 152 ATTCGGTAATATGCAGACGAGTGGCGCTTCGATTCTCGTTCACGCCATCATTTTCTTTGG 211
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 121 ATTCGGTAATATGCAGACGAGTGGCGCGTCGATTCTCGTTCACGCAATCATCTTCTTTGG 180
Query 212 TCTCATCACTATCTTTACCATCGCCATAAACGTCCACATCTATTCCGGTTAACTGTT-TA 270
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 181 TCTCATCACTATCTTCACCATCGCCATTAACGTCCACATCTATTCCGGTTAACTATTGTA 240
Query 271 GCCAGACAAACCG 283
|||||| ||||||
Sbjct 241 GCCAGAGAAACCG 253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13774167629
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5