BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63510.2
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496538 jgi|Araly1|496538|fgenesh2_kg.8__2354__AT5G63510.1 843 0.0
> Ahg496538 jgi|Araly1|496538|fgenesh2_kg.8__2354__AT5G63510.1
Length=1034
Score = 843 bits (456), Expect = 0.0
Identities = 538/576 (93%), Gaps = 11/576 (2%)
Strand=Plus/Plus
Query 551 GATTACCAGCAGCGACAATAATCGACAGGTATGTGACAGTAGGTGCCTACAGTCTTCTGA 610
|||||||||||| |||||| ||||||||||| |||||||| ||||||||||||||||| |
Sbjct 438 GATTACCAGCAGAGACAATTATCGACAGGTACGTGACAGTGGGTGCCTACAGTCTTCTAA 497
Query 611 GATCATGTACCATCGAACCAGAGTGCATCATCGGTCAACACTCAATACTAATGGAAGGCT 670
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 498 GATCATGTACCATCGAACCAGAGTGCATCATTGGCCAACACTCAATACTAATGGAAGGAT 557
Query 671 CACTGGTTGAGACCCGGTCAATCTTGGAAGCGGGTTCAGTTGTGCCGCCAGGAAGAAGGA 730
| ||||| ||||||||||||||| ||||||| ||||| |||||||| |||||||||||||
Sbjct 558 CTCTGGTCGAGACCCGGTCAATCCTGGAAGCAGGTTCGGTTGTGCCACCAGGAAGAAGGA 617
Query 731 TCCCATCAGGTGAACTATGGGGAGGCAATCCAGCAAGATTCATTAGAACCCTAACCAACG 790
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 618 TCCCATCAGGTGAACTATGGGGAGGCAATCCAGCAAGATTCATAAGAACCCTAACCAATG 677
Query 791 AAGAAACCCTAGAGATCCCAAAACTCGCTGTAGCCATCAACCACTTAAGCGGAGATTACT 850
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 AAGAAACACTAGAGATCCCAAAACTCGCTGTAGCCATCAACCACTTAAGCGGAGATTACT 737
Query 851 TCTCTGAGTTCCTACCTTACTCAACTGTCTACTTAGAGGTAGAGAAGTTCAAGAAGTCCC 910
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 738 TCTCTGAGTTCCTACCTTACTCAACCGTCTACTTAGAGGTAGAGAAGTTCAAGAAGTCCC 797
Query 911 TTGGGATCGCCGTTTAGAAGCTTCATCTTTTTCGTGATTCACTTTCATGTGTTTATCTAT 970
|||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 798 TTGGGATCGCAGTTTAGAAGCTTG-TCTTTTTCGTGATTCACTTTCATGTGCTTATCTAT 856
Query 971 CATATGAGGTCTTTCTCTCTGCATATTGCAATAAGTAGCTGATGAACATCAAAACAAGTC 1030
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 857 CATATGAGGTCTCTCTCTCTGCATATTGCAATAAGTAGCTGAAGAACATCAAAACAAGTC 916
Query 1031 CGGCTCT-CTT--TTTT-GGTTCTAAAACGTTTGTCATT-TCGTTTTTT---GGGTTCTT 1082
||||||| ||| |||| |||||| ||| ||||||| || ||||||||| |||||| |
Sbjct 917 CGGCTCTTCTTCGTTTTTGGTTCTCAAATGTTTGTC-TTCTCGTTTTTTTTTGGGTTCGT 975
Query 1083 TGTAAAATTCCATTTAAAACTGATTTTGGCTGAATA 1118
|||||||||||||||||| ||||||||||||| |||
Sbjct 976 TGTAAAATTCCATTTAAA-CTGATTTTGGCTGGATA 1010
Score = 715 bits (387), Expect = 0.0
Identities = 420/436 (96%), Gaps = 2/436 (0%)
Strand=Plus/Plus
Query 35 CTCTCTCTCTTTTCCTCTTTGCAAATCCTTGAAGAAATCCAAAATCCATAGCAATGGCGA 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 CTCTCTCTCTTTTCCTCTTTGCAAATCCTTGAAGAAATCCAAAATCCATAGCAATGGCGA 62
Query 95 CTTCGATAGCTCGATTGTCTCGGAGAGGAGTCACTTCTAACCTGATCCGTCGTTGCTTCG 154
|||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 63 CTTCAATAACTCGATTGTCTCGGAGAGGAGTTACTTCTAACCTGATCCGTCGTTGCTTCG 122
Query 155 CTGCGGAAGCGGCGTTGGCGAGGAAGACAGAGTTACCTAAACCGCAATTCACGGTGTCGC 214
||||||||||||||||||||| |||||||||| | ||||| |||||||| ||||||||||
Sbjct 123 CTGCGGAAGCGGCGTTGGCGACGAAGACAGAGGTGCCTAAGCCGCAATTGACGGTGTCGC 182
Query 215 CGTCGACGGATCGTGTGAAATGGGACTACAGAGGCCAACGACAGATCATTCCTTTGGGAC 274
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CGTCGCCGGATCGTGTGAAATGGGACTACAGAGGCCAACGACAGATCATTCCTTTGGGAC 242
Query 275 AGTGGCTT-CCGAAGGTAGCCGTTGATGCTTACGTGGCACCCAACGTTGTGCTGGCTGGT 333
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 AGTGG-TTACCGAAGGTAGCCGTTGATGCTTACGTGGCACCCAACGTTGTGCTGGCTGGT 301
Query 334 CAGGTCACAGTCTGGGACGGCTCGTCTGTTTGGAACGGTGCCGTTTTGCGCGGCGATCTC 393
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 302 CAGGTCACAGTCTGGGACGGCTCGTCGGTTTGGAACGGTGCCGTTTTACGCGGCGATCTC 361
Query 394 AACAAAATCACTGTTGGATTCTGCTCGAATGTACAGGAACGGTGTGTTGTTCATGCCGCC 453
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 AACAAAATCACCGTCGGATTCTGCTCGAATGTACAGGAACGGTGTGTTGTTCATGCCGCC 421
Query 454 TGGTCTTCCCCAACAG 469
||||| ||||||||||
Sbjct 422 TGGTCGTCCCCAACAG 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44260706637
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5