BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63520.1
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358554 jgi|Araly1|358554|fgenesh1_pg.C_scaffold_8002341 2326 0.0
> Ahg358554 jgi|Araly1|358554|fgenesh1_pg.C_scaffold_8002341
Length=1581
Score = 2326 bits (1259), Expect = 0.0
Identities = 1474/1575 (94%), Gaps = 25/1575 (2%)
Strand=Plus/Plus
Query 13 GAAGGAGAT---GACGACAAAGGGAAAGAGCGAGAACTCAAAGAAGATGAAGACAGATAT 69
||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 24 GAAGGAGATGACGACGACAAAGGGAAAGAGCGAGAACTGGAAGAAGATGAAAACAGATA- 82
Query 70 GGCTGATATGGTTCCAATCGCCGCCATGAACGAAGACCTTCTCCACAACATTCTCTTGAG 129
| |||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 83 --C------GGTTCCAATCGCCGCCATGAACGAAGACCTTCTCCATAACATTCTTTTGAG 134
Query 130 ATTGCCGGCAAAATCGTTTGCTTTCGCTTCATGTGTTAACCGATTCTGGAGCAGCGTCTG 189
||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 135 ATTGCCGGCGAAATCGTTTGCTTTCGCTTCCTGTGTTAACCGATCCTGGAGCAGCGTCTG 194
Query 190 CAATCGAATTCTCTCTCGCCCCAAAATGATATCTGCTTTCTCTCGTAATCCTGATCAACT 249
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 195 CAATCGCATCCTCTCTCGCCCCAAAATGATCTCTGCTTTCTCTCGTAATCCTGATCAACT 254
Query 250 TAGAGCTGGAGAAGAAGTACTTGATAAGGTTTTGTCTGAGCCAATTCGACCACAGTTTGT 309
|||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 255 CAGAGCTGGAGAAGAAGTACTTGATAAGGTTTTATCTGAGCCAATTCGACCAGATTTTGT 314
Query 310 GATCGCAAACATTACATGTGGGAACATGGAAGAAACTTTGACACTGATAACAGAAAGAGT 369
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 315 AATCGCAAACATTACATGTGGAAACATGGAAGAAACTTTGACACTGATAACTGAAAGAGT 374
Query 370 GGGATCAAGGGTTCCTATCATTGTATCTGTTGTTACTGGAATCTTAGGAAAGGAAGCATG 429
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GGGATCAAGGGTTCCTATTATTGTATCTGTTGTTACTGGAATCTTAGGAAAGGAAGCATG 434
Query 430 CAATGACAAGGCTGGAGAGGTCAGACTGCATTCCACAAGTGATGATGAATTGTTCGA-TG 488
||||||||||||||||||||||| || ||||||||| ||||||||||||||||| | ||
Sbjct 435 CAATGACAAGGCTGGAGAGGTCAAACAGCATTCCACTGGTGATGATGAATTGTTC-ATTG 493
Query 489 TTGCAAATTTTGCTATACTGTTGACGATTGGCTACTTACCAGGAATGAAAGTCGACATTA 548
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 494 TTCCAAATTTTGCTATACTCTTGACGATTGGCTACTTACCAGGAATGAAAGTCGACGTTA 553
Query 549 TTCCTGTAATTCAGGCTAAAGGGGAATCTGG-AGCAGA-AATGGAAGACAAATTTGTGAT 606
||||||| |||||||||||||||||||| || | | || | ||| |||||||||||||||
Sbjct 554 TTCCTGTTATTCAGGCTAAAGGGGAATC-GGAATCGGATATTGG-AGACAAATTTGTGAT 611
Query 607 GGATATTAGAAATTATATGTCCATGGTTTCAGGTCATGCTGCTGCACCAGCATGTCTTAT 666
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 GGATATTAGAAATTATGTGTCCATGGTTTCAGGTCATGCTGCTGCACCAGCATGTCTTAT 671
Query 667 ACTCTTTGCGGAGGATACTCATGCCACAGAACCTGTTCTTCACAAACTGGATTATGCCAT 726
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 672 ACTCTTTGGGGAGGATACTCATGCCACAGAACCTGTCCTTCACAAACTGGATTATGCCAT 731
Query 727 GCCTGCTGAGACTGTTATTGTGGGTGGTCAAATTGGCGAGTTTTTACATAAACGTGGTAA 786
|||||| || |||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 732 GCCTGCAGAAACTGTTATTGTGGGTGATCAAATTGGCGAGTTTTTACATAAACGTAGTAA 791
Query 787 TGAACCAAGAAATGTTCAGTTGCAGAAAGATGATAT-CAGAGTTCTCGCTGGCTTAATAT 845
|||| |||||||||||||||||| |||||||||| | |||||||||||| ||||||||||
Sbjct 792 TGAATCAAGAAATGTTCAGTTGCCGAAAGATGAT-TGCAGAGTTCTCGCAGGCTTAATAT 850
Query 846 TTGCAAGAGATAGACACAGACCTGCTCAGGCTGAAAGAATTCAGTTTGACACTGCAATAT 905
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 851 TTGCAAGAGATAGACACAGACCCGCTCAGGCTGAAAGAATTCAGTTTGACACTGCAATAT 910
Query 906 CAAATGGAATGTCATCGGTTGATCTGAGGTACAAGGCGGCTAATGTCAATGTTAGCCTCG 965
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 911 CAAGGGGAATGTCATCGGTTGATCTGAGGTACAAGGCGGCTAATGTCAATGTTAG--TC- 967
Query 966 GCCCTAGTTGTCCTTCGACGCTTCTGACTGCCAAAAGAAGAGGAGAAGCAGAGGTTCTTG 1025
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 968 GCCCTAGATGTCCTTCGACGCTTCTGACTGCCAAAAGAAGAGGAGAAGCAGAGGTTCTGG 1027
Query 1026 ATGGCGATCAAATTCTAGATGACATAGATAATATTCTAGAAAACTATATCTGGGAGAATG 1085
||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1028 ATGGCGAGCAAATTCTAGATGACATAGATAATATTTTAGAAAACCATATCTGGGAGAATG 1087
Query 1086 ATTCATACCTCGGAGTAATAAAACGTAGAAAATACTCAATTGGTTTGGAGGAGAAGCCAA 1145
|| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1088 ATCCATATCTCGGAGTAATAAAACGAAGAAAATACTCAATTGGTTTGGAGGAGAAGCCAA 1147
Query 1146 AAATCATGTCCTCCCTTGTATTTCATCAAGTGAATGGATCTGACGATCAGGATCTTTTAG 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 AAATCATGTCCTCCCTTGTATTTCATCAAGTGAATGGATCTGACGATCAGGATCTTTTAG 1207
Query 1206 TTGATGGTGCCGGAATCAAAACCGGCGACCAATTCCAAGTATACCTCCCTGATCTCAAAG 1265
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 TCGATGGTGCCGGAATCAAAACCGGCGACCAATTCCAAGTATACCTCCCTGATCTCAAAG 1267
Query 1266 TGGCTGAAGCAGCACTAAATGATGTTTCTGCTCAACTTAGAAATCTCAAGTCTAAGCCGA 1325
||||||||||| ||||||||| |||| || |||| ||||||||||||||||||||| | |
Sbjct 1268 TGGCTGAAGCATCACTAAATGCTGTTACTTCTCAGCTTAGAAATCTCAAGTCTAAGGCAA 1327
Query 1326 ATAAACCGGAAGTCGTTGGAGGTTTTGCTTTCGTCGGTAGCTGTCGCGGTGA-TTCCTTC 1384
||||||||||| ||||||||||||||||||||||||||| | |||||||||| || |||
Sbjct 1328 ATAAACCGGAAATCGTTGGAGGTTTTGCTTTCGTCGGTAACAGTCGCGGTGACTTG-TTC 1386
Query 1385 TTTGGTTGTCCAAACGCAGACAGCTCACCGTTTTTAGAGAACTTCCCGGAGTTACCGTTT 1444
|||||| ||||| ||||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct 1387 TTTGGTCGTCCAGACGCAGACAGCTCACCGTTTTTAGAAAATTTCCCGGAGTTACGGTTT 1446
Query 1445 GGCGGTATATTCTGCGATGGTGAAATCGGACGCAGCTTAATCTTGGAGGAGGGAGAGGAA 1504
||||||||||||||||| ||||||| |||||||||||| || |||||||||||||||||
Sbjct 1447 GGCGGTATATTCTGCGACAGTGAAATAGGACGCAGCTTATTCGTGGAGGAGGGAGAGGAA 1506
Query 1505 AAGAAAGAAGTGAGCATCCAAAGATTTCTTCACGTTTATAGTTCGGTATATCTTATTGTC 1564
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 AAGAAAGAAGTGATCATCCGAAGATTTCTTCACGTTTATAGTTCGGTATATCTTATTGTC 1566
Query 1565 TCGTATACATCTTAA 1579
|||||||| ||||||
Sbjct 1567 TCGTATACTTCTTAA 1581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63839250620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5