BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63540.2
Length=2349
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951157 jgi|Araly1|951157|scaffold_803044.1 1458 0.0
> Ahg951157 jgi|Araly1|951157|scaffold_803044.1
Length=1963
Score = 1458 bits (789), Expect = 0.0
Identities = 1014/1114 (91%), Gaps = 50/1114 (4%)
Strand=Plus/Plus
Query 1016 AACAAGGGTAGGAGTGGTTCCTTCTTTAACAACCAGAGCAACTCTAGCTGCGTGGTCGCT 1075
||||||| |||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 890 AACAAGGATAGGAGTGGTTCCTTCATTGACAACCAGAGCAACCCTAGCTGCGTGGTCGC- 948
Query 1076 AAATGGCAATGATACTGGTAATCATGTACATGATACTGGTAATCATGTAAATAGTTCTGC 1135
| | | | ||| | | |||||||||||||||||||| |||||||| |
Sbjct 949 ---T----A--A-A-TGG----C----A-ATGATACTGGTAATCATGTAGATAGTTCTAC 988
Query 1136 CTCGGGCAATGCTAGTCACACTCAAGCCAA---TCAAGGCATACCCGTACATGTAACGAG 1192
||||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||
Sbjct 989 CTCGGGCAATGCTAGTCACGCTCAGGCCAATCCTCAAGGCATACCCGTAAATGTAACGAG 1048
Query 1193 AACTCACAATAGTTCACGGGCGATGGATGAACCTCTTGCTTCTACCAATGTGGGAGCTAC 1252
|||||||| ||||||||||||||||||||| | || ||||||||||||||||| ||||||
Sbjct 1049 AACTCACATTAGTTCACGGGCGATGGATGAGCATCCTGCTTCTACCAATGTGGAAGCTAC 1108
Query 1253 TGTTTCAAGGGTTGAGCATATGCAGATTGATACTGCTTCTGCGCACGGGGAAAGAACGTT 1312
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1109 TGTTTCTAGGGTTGAGCATATGCAGATTGATACTGCTTCTGCGCATGGGGAAAGAACGTT 1168
Query 1313 TTCTGATATACATTCAACTTCTAGTAACATTCACCGAG-CAGCATCCACAGCTGGTACTG 1371
||||| |||||| ||||||||||||||||||||||| | ||||||||||| | |||
Sbjct 1169 TTCTGGTATACACTCAACTTCTAGTAACATTCACCG-GCCAGCATCCACA----G--CTG 1221
Query 1372 GTACTAGCTGCAGTGGTGCCTGCAGTGGTGCAAGATCTTTTGCCAACAACGTTGGCGGAA 1431
|||||||||||||| | | | | ||||||||||| |||||||||||||| |||
Sbjct 1222 GTACTAGCTGCAGT-G-G--T--A------CAAGATCTTTTTCCAACAACGTTGGCAGAA 1269
Query 1432 ATTCATTGGAT---CAAACATCTAACGTGACTTCATTTGTTGAAGAAATGCATATTGACA 1488
| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 GTACATTGGATCAACAAACTTCTAACGTGACTTCATTTGTTGAAGAAATGCATATTGACA 1329
Query 1489 CTGGTCGTGTAAGGGATACAACGACTCATATATATGGTTCAGATTCAGGCGGTGTAGC-- 1546
| ||||||||||| ||||||||| ||||| |||||||||||| ||||||||| |||||
Sbjct 1330 CGGGTCGTGTAAGAGATACAACGTCTCATGTATATGGTTCAGGTTCAGGCGGAGTAGCAG 1389
Query 1547 A-GCAGAATTCAGTAATATGGTTGTCGATTTGGAAGGCCCTTCTGTGCTGTCTACAAATA 1605
| |||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1390 ATGCAGAAGTCAGTAATAAAATTGTCGATTTGGAAGGCCCTTCTGTGATGTCTACAAATA 1449
Query 1606 CAGAGAAACCTTTCACATACTTAGCCGAGTTGTCTCAAAAATGGGCAGTTATGAAAGATA 1665
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 CAGAGAAGCCTTTCACTTACTTAGCCGAGTTGTCTCAAAAATGGGCAGTTATGAAAGATA 1509
Query 1666 CCATACATTTTGTTCAAGGAAGGATCAAGTGCTTTCTAACTGGAGTGAAGAAATTCCAGT 1725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 CCATACATTTTGTTCAAGGAAGGATCAAGTGCTTTCTAACTGGAGTGAAGAAATTCCAGT 1569
Query 1726 TCAAGCAACAGTCTACGTATGAGCTTCTATGCTATGTTGATGATGGTAGTCTCATCTGTG 1785
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1570 TCAAGCAACAGTCTACGTATGAGCTTCTATGCTACGTTGATGATGGAAGTCTCATCTGTG 1629
Query 1786 AGATTTTGCTCCATAACGACGTTGTACAAAAAAGGATAGGACATTCATCCATGGAAGTCA 1845
|||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1630 AGATCTTGCTCCATAACGATGTTGTACAAAAAAGGATAGGACATACATCCATGGAAGTCA 1689
Query 1846 CAGCTGCTCTTTCCTCGTCAGCTCCAACATCACTAAATGCCATGATGAAAGAGAAACTGA 1905
|||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1690 CAGCTGCTCTTTCCTCTTCAGCACCAACATCAGTAAATGCCATGATGAAAGAGAAACTGA 1749
Query 1906 AACGCTTCCAGTTGTTTCTCGCTGACTTTGAGGGAATAATGGTGGTAGAAATGAACAGAT 1965
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1750 AACGCTTCCAGTTGTTTCTCGCTGACTTCGAGGGAATAATGATGGTAGAAATGAACAGAT 1809
Query 1966 CGTCGCAATATCCAGTAGCTATCGAAATGAATCAGGGATGTTCGCTAACCGATGCTCGGT 2025
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1810 CGTCGCAATATCCAGTAGCTATTGAAATGAATCAGGGATGTTCGCTAACCGATGCTCGGT 1869
Query 2026 TACTCTTGGACAGAATCAAATCTTCTTCAAGAACATCCTCAAGCTTAAATCCAGTTGTTG 2085
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1870 TACTCTTGGAAAGAATCAAATCTTCTTCAAGAACATCCTCAAGCTTAAATCCAGTTGTTG 1929
Query 2086 TTCTGTCCCCTTGATCCAGTACTCAACTAAAAGC 2119
|||| |||||||||||||||| ||||||||||||
Sbjct 1930 TTCTATCCCCTTGATCCAGTAGTCAACTAAAAGC 1963
Score = 1312 bits (710), Expect = 0.0
Identities = 836/893 (94%), Gaps = 24/893 (3%)
Strand=Plus/Plus
Query 44 CCTAAATTTCGCCGGCGAAGAAATGCGTAGACGGCGCCTGCAACTCCGGTACTCCTCCGA 103
||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 CCTAAATTTCGCCGGCG-A-AAATGCGTAGACGACGCCTGCAACTCCGGTACTCCTCCGA 58
Query 104 C---GAAGAAGAAG-A--AGATGAAACTGGAACAAGCGGAGTTGGTGATTCTGT-TCAGA 156
| |||||||||| | ||| |||||||||||||||||| ||||||||||| | |||||
Sbjct 59 CGAAGAAGAAGAAGAAGGAGAAGAAACTGGAACAAGCGGAATTGGTGATTCT-TCTCAGA 117
Query 157 GCTTTGGT-ATTGCTTCATCTATACAACCGGAAACCTCAGTATCGTCGAATTCTAACCCT 215
| ||||| | ||| |||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 118 GAATTGGTCA-TGCCTCATCTGTACAACCGGAAACCTCAGTAGCGTCGAATTCTAACCCT 176
Query 216 AATCCCGGTGAGAGAATCGCTATATCGGAAGTTGAGATTATCGACGTTTTTGGTAATCCC 275
|||||||| || | ||| ||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 177 AATCCCGGCGAAACAATTGCTGTATCGGAAGTTGAGATTATCGACGTATTTGGCAATCCC 236
Query 276 CAGCCTACACCGCCGGATTCTAGTATTCCTACACCGTATCCGGTTTATCCGTC---G--- 329
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 237 CAGCCTACACCGCCGGATTCTAGTATTCCTACGCCGTATCCGGTTTATCCGTCGGAGTCA 296
Query 330 GAGTC--A----GTGAGCGGCAATGACTATGAATCGCCGATCAGTGAGGTTCTTTCTCGA 383
||||| | ||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 297 GAGTCGGAGTTGGTGAGAGGAAATAACTATGAATCGCCGATCAGTGAGGTTCTTTCTCGA 356
Query 384 ATGGGGATTAAATTGAAGAGGGAGTGGTGGGTATCTTGTCTTTCAGGACTTGAAACTTCA 443
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 357 ATGGGGATTAAATTGAAGAGGGAGTGGTGGGTATCTTGTCTTTCTGGACTTGAAACTTCA 416
Query 444 ATTCCACAATTTTCCTACCTCGATGTTGCAGCTAAAGCTAAGCATTGCTTCGAGCAGTTT 503
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 417 ATTCCACAATTTTCGTACCTCGATGTTGCAGCTAAAGCTAAGCATTGCTTTGAGCAGTTT 476
Query 504 ATGTTTTTCGATATGAATTTATGCGGAGGTGGTGTTCTTCCTCCGAACGTTGCGTCTATG 563
||||||| |||| ||||||||||||||| |||||||||||||| ||| ||||||||||||
Sbjct 477 ATGTTTTCCGATGTGAATTTATGCGGAGCTGGTGTTCTTCCTCGGAATGTTGCGTCTATG 536
Query 564 AATCGTATAGAACTCGCTGGTCCGTTTGTTCTGCAGGTTGATGAGATTGTTAACATTGGC 623
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AATCTTATAGAACTCGCTGGTCCGTTTGTTCTGCAGGTTGATGAGATTGTTAACATTGGC 596
Query 624 TGCCCACTCAAAGGGAGGTATGAGAATGCTAATGCAGGGCTTAAGAGGTGCCTTAAGCTG 683
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 597 TGCCCACTCAAAGGGAGGTACGAAAATGCTAATGCAGGGCTTAAGAGGTGCCTTAAGCTC 656
Query 684 TCTATGACAGATGGTGTTCAACGCGTTTTTGGTATGGAATACAGGCCTATTAAAGATCTT 743
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCCATGACAGATGGTGTTCAACGCGTTTTTGGTATGGAATACAGGCCTATTAAAGATCTT 716
Query 744 CAAGTCTTGGCTCCTGCTGGTTTAAAGATTGTTGTATCTAGTGTACAAGTTCGGCATGGG 803
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 717 CAAGTCTTGGCTCCTGCTGGTTTAAAGGTTGTTGTATCTAGTGTACAAGTTCGGCATGGG 776
Query 804 CTTTTAATGCTAGTACCTGAGATTGTAGAAGTTTTAGGAGGGATGGTTGAAGAACTAGAA 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CTTTTAATGCTAGTACCTGAGATTGTAGAAGTTTTAGGAGGGATGGTTGAAGAACTAGAA 836
Query 864 GAAGCACGAAAGCGTCTGGTTGTTGAAGTAAACAAACCTCCAAGAGGAAAAAG 916
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GAAGCACGAAAGCGTCTGGTTGTTGAAGTAAACAAACCTCCAAGAGGAAAAAG 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88483639135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5