BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G63550.2 Length=1967 Score E Sequences producing significant alignments: (Bits) Value Ahg332577 jgi|Araly1|332577|fgenesh1_pm.C_scaffold_8001920 2372 0.0 Ahg485225 jgi|Araly1|485225|fgenesh2_kg.5__1217__AT3G48710.1 630 9e-180 > Ahg332577 jgi|Araly1|332577|fgenesh1_pm.C_scaffold_8001920 Length=1620 Score = 2372 bits (1284), Expect = 0.0 Identities = 1500/1602 (94%), Gaps = 24/1602 (1%) Strand=Plus/Plus Query 134 ATGGCGACTGAAACCCTAGATGAGAAGACACCGGAAGTGAATTCTCCGGCGAAGGAGGAA 193 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | Sbjct 1 ATGGCGACTGAAACCCTAGAAGAGAAGATACCGGAAGTGAATTCTCCGGCGAAGGATGTT 60 Query 194 ATTGATGTTGTTCCGAAGGAGGAGAAGGAGGTAGAGAAAGAAAAAGTGGATTCGCCgaga 253 ||||| || | ||||||||||| |||| ||||||||||||||| ||||||||||||| Sbjct 61 GGTGATGCTGCTGCGAAGGAGGAGGTGGAGATAGAGAAAGAAAAAGCGGATTCGCCGAGA 120 Query 254 attggcgaagcggaggaggagaagaaggaagatgaagaagagggtgaagcgaaagaagga 313 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATTGAAGAAGCGGAGGAGGAGAAGAAGGAAGATGAAGAAGAGGGTGAAGCGAAAGAAGGA 180 Query 314 gaattgg-gtgagaaagataaagaagacgatgtagaaagtgaggaggaagaagaagaaga 372 ||||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 181 GAATTGGAG-GAGAAAGATAAAGAAGACGATGTCGAAAGTGAGGAGGAGGAAGAAGAAGA 239 Query 373 agaaggaagtggaagtaagaaatcgtcggagaaggaaACGGTGACTCCGACTAGTGAGAG 432 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 240 AGAAGGAAGTGGAAGTAAGAAATCGTCGGAGAAGGAAGCGGTGACTCCGACTAGTGAGAG 299 Query 433 ACCAACGAGGGAGAGAAAGAAGGTTGAGCGTTTCTCGTTGTCGACTCCTATGCGGGCTCC 492 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 300 ACCAACGAGGGAGAGAAAGAAAGTTGAGCGTTTCTCGTTGTCGACTCCTATGCGGGCTAC 359 Query 493 ACCGAGCAAGTCCGTTTCAATTGAAAAGGGTCGTGGAACACCTCTCAGAGAAATTCCAAA 552 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 ACCAAGCAAGTCCGTTTCAATTGAAAAGGGTCGTGGAACACCTCTCAGAGAAATTCCAAA 419 Query 553 TGTGGCTCATAAACTATCGAAGAGAAAAGCTGATGACAACCTGATGTTACTACACACCAT 612 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 420 TGTGGCTCATAAACTATCCAAGAGGAAAGCTGATGACAACCTGATGTTACTACACACCAT 479 Query 613 TCTTTTTGGGAAGAAAGCAAAGGCACAGATGGTTAAGAGAAACATTGGTCAATTTTCTGG 672 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TCTTTATGGGAAGAAAGCAAAGGCACAGATGGTTAAGAGAAACATTGGTCAATTTTCTGG 539 Query 673 CTTTGCCTGGTCAGAGAAAGAGGAGGAGAAGCAGAGAGCACGAATAAAAGAGAAGATTGA 732 |||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 540 CTTTGCATGGTCAGAGAATGAGGAGGAGAAGCAGAGAGCACGCATAAAAGAGAAGATTGA 599 Query 733 CAAATGCGTAAAAGAAAAATTGATTGTTTTTTGTGATGTGCTTGATATCCCTATAAGCAG 792 ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 600 CAAATGCATAAAAGAAAAATTGATTGTTTTTTGTGATGTGCTTGATATACCTATAAGTAG 659 Query 793 AAGTAACGTGAAAAAAGAAGAACTAGCTGTCAAAGTGCTTGAATTTTTGGAATCTCCCAA 852 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 660 AAGTAACATGAAAAAAGAAGAACTTGCTGTCAAAGTGCTTGAATTTTTGGAATCTCCCAA 719 Query 853 GGAAACTAGAGATGTTATAATTGCTGATCAAGAAAAGCAGGCGAAAAAGCGCAAGAGTAC 912 |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GGAAACAAGAGATGTTGTAATTGCTGATCAAGAAAAGCAGGCGAAAAAGCGCAAGAGTAC 779 Query 913 ACCAAA-AAGGGGGAAATCTGGAGAATCTTCGGACACCCCTGCCAAGAGGAAAAGGCAAA 971 || ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 780 AC-AAAGAAGGGGGAAATCTGGAGAATCTTCGGACACCCCAGCCAAGAGGAAAAGGCAAA 838 Query 972 CTAAAAAGCGAGATCTTCCATCTGACACGGAAGAAGGCAAGGATGAGGGAGATGCTGACT 1031 | |||||| |||||| ||||||||||| ||||| ||||||||||| ||||||||||| | Sbjct 839 CAAAAAAGAGAGATCAGCCATCTGACACTGAAGAGGGCAAGGATGAAGGAGATGCTGATT 898 Query 1032 CTGAAGGAACTAATGATCCTCATGAAGAAGATGATGCAGCGCCAGAGGAAGAAAGTGACC 1091 |||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct 899 CTGAAGGAACTAATGATCCTCATGAAGAAGATGAGGCAACTCCAGAGGAAGAAAGTGACC 958 Query 1092 ATGAAAAGACTGACACTGACGATGAGAAAGATGAAG-TAGAGGTTGAGAAACCATCCAAG 1150 ||||||||||||||||||| ||||| ||||| ||| | |||||||||||||||||||| Sbjct 959 ATGAAAAGACTGACACTGAAGATGAAAAAGACAAAGCT-GAGGTTGAGAAACCATCCAAT 1017 Query 1151 AAGAAAAGCTCATCGAAAAAGACTGTAGAGGAGAGTTCAGGGTCCAAAGGTAAGGATAAG 1210 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1018 AAGAAAAGATCATCGAAAAAGACTGTAGAGGAGAGCTCAGGGTCCAAAGGTAAGGATAAG 1077 Query 1211 CAACCTTCTGCCAAAGGTTCTGCAAGATCTGGGGAAAAGTCCTCCAAACAAATTGCTAAG 1270 ||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||| Sbjct 1078 CAAGCTTCTGCCAAAGGTTCTGCAAAATCTGGTGAAAAGTTCTCCAAACAAATTGCTAAG 1137 Query 1271 TCAACTTCATCCCCAGCTAAGAAGCAAAAAGTTGATCACGTTGAGTCTTCTAAAGAGAAA 1330 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1138 TCAACTTCATCCCCAGCTAAGAAGCAAAAAGTTGATCATGTCGAGTCTTCTAAAGAGAAA 1197 Query 1331 AGCAAGAAACAGCCGAGTAAGCCACAGGCTAAGGGATCTAAAGAGAAAGGAAAAGCCACT 1390 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 1198 AGCAAGAAACAGCCGAGTAAGCCACAGGCTAAGGCATCTAAAGAGAAAGGTAAAGCCACT 1257 Query 1391 AAGAAAGGCAAAGCCAAAGCAGAGCCCACCAGAAAAGAGATGCTTGAAGTGGTGTCCAAA 1450 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1258 AAGAAAGGCAAAGCCAAAGCAGAGCCCACCAGAGAAGAGATGCTTGAAGTGGTGTCCAAA 1317 Query 1451 ATTCTGAAGGAAGTAGACTTCAATACGGCAACACTATCAGATATTCTGCAGAAGCTAAGT 1510 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1318 ATTCTGAAGGAAGTAGACTTCAATACGGCTACACTGTCAGATATTCTGCAGAAGCTAAGC 1377 Query 1511 GACCATTTTGGTGTCGAGCTGTCGCATAGAAAACCAGAGGTGAAGGATGTTATCACAGAG 1570 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 GACCATTTTGGTGTCGAACTGTCGCATAGAAAACCAGAGGTGAAGGATGTTATCACAGAT 1437 Query 1571 GCCATAAATGCAATGACtgatga------tga--a-gaagaagatgaagaggaagaagct 1621 ||||||||||||||||||||||| ||| | |||||||| ||||||||| |||| Sbjct 1438 GCCATAAATGCAATGACTGATGACGAAGATGATGAAGAAGAAGACGAAGAGGAAAAAGCC 1497 Query 1622 gaggcaggaagtgacaaagaaaaggaagaagta-aa-a-g--ga-ga-g--gaagaagag 1672 |||| ||||||||||||| |||||||||| | || | | || || | ||||||||| Sbjct 1498 AAGGCTGGAAGTGACAAAGTGAAGGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAG 1557 Query 1673 gaaaaagctgaggctgaaagtgacaaagagaaggaaaaagaa 1714 |||| ||||||||||||||||||||||||||||||| ||||| Sbjct 1558 GAAACAGCTGAGGCTGAAAGTGACAAAGAGAAGGAAGAAGAA 1599 > Ahg485225 jgi|Araly1|485225|fgenesh2_kg.5__1217__AT3G48710.1 Length=1698 Score = 630 bits (341), Expect = 9e-180 Identities = 893/1148 (78%), Gaps = 84/1148 (7%) Strand=Plus/Plus Query 499 CAAGTCC-GTTTCAATTGAAAAGGGTCGTGGAACACCTCTCAGAGAAATTCCAAATGTGG 557 |||| || || |||||||| ||||||||||||||| || || |||||||||||||| | Sbjct 350 CAAG-CCTGTGTCAATTGAGCAGGGTCGTGGAACACGGCTTAGGGAAATTCCAAATGTTG 408 Query 558 CTCATAAACTATCGAAGAGAAAAGCTGATGACAACCTGATGTTACTACACACCATTCTTT 617 || ||||||| || ||||||||| |||| |||||||| | ||||| ||||||||||||| Sbjct 409 CTTATAAACTGTCCAAGAGAAAACCTGACGACAACCTCTTCTTACTTCACACCATTCTTT 468 Query 618 TTGGGAAGAAA-GCAAAGGCACAGATGGTTAAGAGAAACATTGGTCAATTTTCTGGCTTT 676 || || ||| | ||||||||||||| | |||| ||||||||| || ||||| || ||| Sbjct 469 ACGGCAA-AAAGGGAAAGGCACAGATGCTGAAGAAAAACATTGGCCAGTTTTCGGGTTTT 527 Query 677 GCCTGGTCAGAGAAAGAGGAGGAGAAGCAGAGAGCACGA-ATAAAAGAGAAGATTGACAA 735 | ||||||||| |||||||||||||||| |||||| || | || |||||| |||| || Sbjct 528 GTATGGTCAGAGCAAGAGGAGGAGAAGCAAAGAGCAAGAGCT-AAGGAGAAGCTTGAGAA 586 Query 736 ATGCGTAAAAGAAAAATTGATTGTTTTTTGTGATGTGCTTGATATCCCTATAAGCAGAAG 795 ||| | |||||||| ||||||| ||| ||||||||||||||||| || |||| || ||| Sbjct 587 ATGTATCAAAGAAAAGTTGATTGATTTCTGTGATGTGCTTGATATACCAATAAACAAAAG 646 Query 796 TAAC-GTGAAAAAAGAAGAACTAGCTGTCAA-AGTGCTTGAATTTTTGGAAT-CTCCCAA 852 | || |||||||| |||||||| ||||| || ||||||||||||||||| || | ||||| Sbjct 647 T-ACTGTGAAAAAGGAAGAACTGGCTGT-AAGAGTGCTTGAATTTTTGGTATGC-CCCAA 703 Query 853 GGAAACTAGAGATGTTATAATTGCTGATCA-AGAAAAGCAGGCGAAAAAGCGC---AAGA 908 | ||| || ||| || || |||||||| | |||||| | | ||||||||| |||| Sbjct 704 AGCAACAAGGGATATTCTACTTGCTGAT-AGTGAAAAGGAAACTAAAAAGCGCAAGAAGA 762 Query 909 GTACACC-AAAAAGGGGGAAATCTGGAGAATCTTCGGACAC-CCCTGCCAAGAGGA-AA- 964 | ||||| || || | || ||||||||||| || || | |||||||||||||| || Sbjct 763 GCACACCGAAGAA-CGTGACCTCTGGAGAATCATCAGA-TCTCCCTGCCAAGAGGAGAAG 820 Query 965 --AGGC--A-AA--CT--AAA-AAGCGAGATCTTCCATCTGACACGGAAGAAGGCAA-GG 1013 |||| | || || ||| || | ||| | ||| |||| || ||||| || || Sbjct 821 GCAGGCGAAGAATTCTGGAAAGAAACAAGAACAGCCAACTGAGAC---TGAAGGAAACGG 877 Query 1014 ATGAGGGAGATGCTGACTCTGAAGGAACTAATGATC-CTCATGAAGAAGATGATGCAGCG 1072 ||||| |||| || || |||||||| ||||| | |||||| ||||||||||| ||| Sbjct 878 -TGAGGCTGATGTTGGTTCCGAAGGAACAAATGA-CTCTCATGGAGAAGATGATGTAGCT 935 Query 1073 CCAGAGGAAGAAAGTGAC---CATGAAAAGACTGACACTGACGATGAGAAAGATGAAG-T 1128 ||||||||||||| || ||||| | || || ||||| |||||||||||| ||| Sbjct 936 CCAGAGGAAGAAAACAACAAAAATGAAGATACCGAAACTGAAGATGAGAAAGATAAAGCC 995 Query 1129 AGAGGTTG-AGA--AA-CCATCCAAGAAGAAAAGCTCATCGAAAAA-GACTGTAG-AGGA 1182 | ||| | ||| || || |||| |||||||||| || ||||| |||| || |||| Sbjct 996 A-AGG-AGAAGACTAAGTCAACCAATAAGAAAAGCTTGTC-AAAAAGGACT-AAGAAGGA 1051 Query 1183 GAGTTCAGGGTCCAAAGGT-AAGGATAAGCAACCTTCTGCCAAAGGTTCTGCAAGATCT- 1240 || || | | || | || || || || ||| ||||||||||||| |||| Sbjct 1052 GAAACCA--G--C--AGCTGAA-GAGGAG-AA--ATCTATTAAAGGTTCTGCAAAATCTA 1101 Query 1241 GGGGAAAAGTCCTCCAAACAAATTGCTAAGTCAACTTCATC-CCCAGCTAAGAAGCAAAA 1299 | | ||||||||||| |||||| | ||| ||||||||||| | ||| ||||||||||| Sbjct 1102 GTCG-AAAGTCCTCCAGACAAATCGATAAATCAACTTCATCATCAAGC-AAGAAGCAAAA 1159 Query 1300 AGTTGATCACGTTGAGTCTTCTAAAGAGAAAAGCAAGAAACAGCCGAGTAAGCCACAGGC 1359 |||||| | | || || |||||||||||| |||||| |||| | ||||| |||||||| Sbjct 1160 GGTTGATAAAGACGATTCCTCTAAAGAGAAAGGCAAGACACAGACAAGTAAACCACAGGC 1219 Query 1360 TAAGGGATCTAAAGAGAAAGGAAAAGCCAC-TAAGAAAGGCAAAGCCAAAGCAGAGCCCA 1418 |||||||| ||||| |||||||| || | ||||||||| ||| |||| | | |||| Sbjct 1220 AAAGGGATCCAAAGATCAAGGAAAATCC-CGTAAGAAAGGTAAA---AAAG-A-A-CCCA 1272 Query 1419 CCAGAAAAGAGA-TGCTTGAAGTGGTGTCCAAAATTCTGAAGGAAGTAGACTTCAATACG 1477 | | |||||| | ||| || |||||| |||||||||||||||||||||||||||||||| Sbjct 1273 CAAAAAAAGA-ACTGCATGTGGTGGTGGCCAAAATTCTGAAGGAAGTAGACTTCAATACG 1331 Query 1478 GCAACACTATCAGATATTCTGCAGAAGCTAAGTGA-CCATTTTGGTGTCGAGCTG-TCGC 1535 ||||| ||||| |||||| ||| |||||| | || ||||||||| || || || | || Sbjct 1332 GCAACTCTATCTGATATTTTGCGGAAGCTTGG-GAGCCATTTTGGAGTTGATCTTAT-GC 1389 Query 1536 ATAGAAAACCAGAGGTGAAGGATGTTATCACAGAGGCCATAAATGCAATGACtgatgatg 1595 |||||||| |||||||||||||| | || ||||| ||||| || | ||||| |||||||| Sbjct 1390 ATAGAAAAGCAGAGGTGAAGGATATCATTACAGATGCCATTAACGAAATGAGTGATGATG 1449 Query 1596 aagaagaa 1603 | || ||| Sbjct 1450 ATGA-GAA 1456 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73933165545 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5