BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63550.2
Length=1967
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332577 jgi|Araly1|332577|fgenesh1_pm.C_scaffold_8001920 2372 0.0
Ahg485225 jgi|Araly1|485225|fgenesh2_kg.5__1217__AT3G48710.1 630 9e-180
> Ahg332577 jgi|Araly1|332577|fgenesh1_pm.C_scaffold_8001920
Length=1620
Score = 2372 bits (1284), Expect = 0.0
Identities = 1500/1602 (94%), Gaps = 24/1602 (1%)
Strand=Plus/Plus
Query 134 ATGGCGACTGAAACCCTAGATGAGAAGACACCGGAAGTGAATTCTCCGGCGAAGGAGGAA 193
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct 1 ATGGCGACTGAAACCCTAGAAGAGAAGATACCGGAAGTGAATTCTCCGGCGAAGGATGTT 60
Query 194 ATTGATGTTGTTCCGAAGGAGGAGAAGGAGGTAGAGAAAGAAAAAGTGGATTCGCCgaga 253
||||| || | ||||||||||| |||| ||||||||||||||| |||||||||||||
Sbjct 61 GGTGATGCTGCTGCGAAGGAGGAGGTGGAGATAGAGAAAGAAAAAGCGGATTCGCCGAGA 120
Query 254 attggcgaagcggaggaggagaagaaggaagatgaagaagagggtgaagcgaaagaagga 313
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTGAAGAAGCGGAGGAGGAGAAGAAGGAAGATGAAGAAGAGGGTGAAGCGAAAGAAGGA 180
Query 314 gaattgg-gtgagaaagataaagaagacgatgtagaaagtgaggaggaagaagaagaaga 372
||||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 181 GAATTGGAG-GAGAAAGATAAAGAAGACGATGTCGAAAGTGAGGAGGAGGAAGAAGAAGA 239
Query 373 agaaggaagtggaagtaagaaatcgtcggagaaggaaACGGTGACTCCGACTAGTGAGAG 432
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 AGAAGGAAGTGGAAGTAAGAAATCGTCGGAGAAGGAAGCGGTGACTCCGACTAGTGAGAG 299
Query 433 ACCAACGAGGGAGAGAAAGAAGGTTGAGCGTTTCTCGTTGTCGACTCCTATGCGGGCTCC 492
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 300 ACCAACGAGGGAGAGAAAGAAAGTTGAGCGTTTCTCGTTGTCGACTCCTATGCGGGCTAC 359
Query 493 ACCGAGCAAGTCCGTTTCAATTGAAAAGGGTCGTGGAACACCTCTCAGAGAAATTCCAAA 552
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACCAAGCAAGTCCGTTTCAATTGAAAAGGGTCGTGGAACACCTCTCAGAGAAATTCCAAA 419
Query 553 TGTGGCTCATAAACTATCGAAGAGAAAAGCTGATGACAACCTGATGTTACTACACACCAT 612
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 TGTGGCTCATAAACTATCCAAGAGGAAAGCTGATGACAACCTGATGTTACTACACACCAT 479
Query 613 TCTTTTTGGGAAGAAAGCAAAGGCACAGATGGTTAAGAGAAACATTGGTCAATTTTCTGG 672
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTTTATGGGAAGAAAGCAAAGGCACAGATGGTTAAGAGAAACATTGGTCAATTTTCTGG 539
Query 673 CTTTGCCTGGTCAGAGAAAGAGGAGGAGAAGCAGAGAGCACGAATAAAAGAGAAGATTGA 732
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 CTTTGCATGGTCAGAGAATGAGGAGGAGAAGCAGAGAGCACGCATAAAAGAGAAGATTGA 599
Query 733 CAAATGCGTAAAAGAAAAATTGATTGTTTTTTGTGATGTGCTTGATATCCCTATAAGCAG 792
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 600 CAAATGCATAAAAGAAAAATTGATTGTTTTTTGTGATGTGCTTGATATACCTATAAGTAG 659
Query 793 AAGTAACGTGAAAAAAGAAGAACTAGCTGTCAAAGTGCTTGAATTTTTGGAATCTCCCAA 852
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 AAGTAACATGAAAAAAGAAGAACTTGCTGTCAAAGTGCTTGAATTTTTGGAATCTCCCAA 719
Query 853 GGAAACTAGAGATGTTATAATTGCTGATCAAGAAAAGCAGGCGAAAAAGCGCAAGAGTAC 912
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGAAACAAGAGATGTTGTAATTGCTGATCAAGAAAAGCAGGCGAAAAAGCGCAAGAGTAC 779
Query 913 ACCAAA-AAGGGGGAAATCTGGAGAATCTTCGGACACCCCTGCCAAGAGGAAAAGGCAAA 971
|| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 AC-AAAGAAGGGGGAAATCTGGAGAATCTTCGGACACCCCAGCCAAGAGGAAAAGGCAAA 838
Query 972 CTAAAAAGCGAGATCTTCCATCTGACACGGAAGAAGGCAAGGATGAGGGAGATGCTGACT 1031
| |||||| |||||| ||||||||||| ||||| ||||||||||| ||||||||||| |
Sbjct 839 CAAAAAAGAGAGATCAGCCATCTGACACTGAAGAGGGCAAGGATGAAGGAGATGCTGATT 898
Query 1032 CTGAAGGAACTAATGATCCTCATGAAGAAGATGATGCAGCGCCAGAGGAAGAAAGTGACC 1091
|||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 899 CTGAAGGAACTAATGATCCTCATGAAGAAGATGAGGCAACTCCAGAGGAAGAAAGTGACC 958
Query 1092 ATGAAAAGACTGACACTGACGATGAGAAAGATGAAG-TAGAGGTTGAGAAACCATCCAAG 1150
||||||||||||||||||| ||||| ||||| ||| | ||||||||||||||||||||
Sbjct 959 ATGAAAAGACTGACACTGAAGATGAAAAAGACAAAGCT-GAGGTTGAGAAACCATCCAAT 1017
Query 1151 AAGAAAAGCTCATCGAAAAAGACTGTAGAGGAGAGTTCAGGGTCCAAAGGTAAGGATAAG 1210
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1018 AAGAAAAGATCATCGAAAAAGACTGTAGAGGAGAGCTCAGGGTCCAAAGGTAAGGATAAG 1077
Query 1211 CAACCTTCTGCCAAAGGTTCTGCAAGATCTGGGGAAAAGTCCTCCAAACAAATTGCTAAG 1270
||| ||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||
Sbjct 1078 CAAGCTTCTGCCAAAGGTTCTGCAAAATCTGGTGAAAAGTTCTCCAAACAAATTGCTAAG 1137
Query 1271 TCAACTTCATCCCCAGCTAAGAAGCAAAAAGTTGATCACGTTGAGTCTTCTAAAGAGAAA 1330
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1138 TCAACTTCATCCCCAGCTAAGAAGCAAAAAGTTGATCATGTCGAGTCTTCTAAAGAGAAA 1197
Query 1331 AGCAAGAAACAGCCGAGTAAGCCACAGGCTAAGGGATCTAAAGAGAAAGGAAAAGCCACT 1390
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1198 AGCAAGAAACAGCCGAGTAAGCCACAGGCTAAGGCATCTAAAGAGAAAGGTAAAGCCACT 1257
Query 1391 AAGAAAGGCAAAGCCAAAGCAGAGCCCACCAGAAAAGAGATGCTTGAAGTGGTGTCCAAA 1450
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1258 AAGAAAGGCAAAGCCAAAGCAGAGCCCACCAGAGAAGAGATGCTTGAAGTGGTGTCCAAA 1317
Query 1451 ATTCTGAAGGAAGTAGACTTCAATACGGCAACACTATCAGATATTCTGCAGAAGCTAAGT 1510
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1318 ATTCTGAAGGAAGTAGACTTCAATACGGCTACACTGTCAGATATTCTGCAGAAGCTAAGC 1377
Query 1511 GACCATTTTGGTGTCGAGCTGTCGCATAGAAAACCAGAGGTGAAGGATGTTATCACAGAG 1570
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GACCATTTTGGTGTCGAACTGTCGCATAGAAAACCAGAGGTGAAGGATGTTATCACAGAT 1437
Query 1571 GCCATAAATGCAATGACtgatga------tga--a-gaagaagatgaagaggaagaagct 1621
||||||||||||||||||||||| ||| | |||||||| ||||||||| ||||
Sbjct 1438 GCCATAAATGCAATGACTGATGACGAAGATGATGAAGAAGAAGACGAAGAGGAAAAAGCC 1497
Query 1622 gaggcaggaagtgacaaagaaaaggaagaagta-aa-a-g--ga-ga-g--gaagaagag 1672
|||| ||||||||||||| |||||||||| | || | | || || | |||||||||
Sbjct 1498 AAGGCTGGAAGTGACAAAGTGAAGGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAG 1557
Query 1673 gaaaaagctgaggctgaaagtgacaaagagaaggaaaaagaa 1714
|||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1558 GAAACAGCTGAGGCTGAAAGTGACAAAGAGAAGGAAGAAGAA 1599
> Ahg485225 jgi|Araly1|485225|fgenesh2_kg.5__1217__AT3G48710.1
Length=1698
Score = 630 bits (341), Expect = 9e-180
Identities = 893/1148 (78%), Gaps = 84/1148 (7%)
Strand=Plus/Plus
Query 499 CAAGTCC-GTTTCAATTGAAAAGGGTCGTGGAACACCTCTCAGAGAAATTCCAAATGTGG 557
|||| || || |||||||| ||||||||||||||| || || |||||||||||||| |
Sbjct 350 CAAG-CCTGTGTCAATTGAGCAGGGTCGTGGAACACGGCTTAGGGAAATTCCAAATGTTG 408
Query 558 CTCATAAACTATCGAAGAGAAAAGCTGATGACAACCTGATGTTACTACACACCATTCTTT 617
|| ||||||| || ||||||||| |||| |||||||| | ||||| |||||||||||||
Sbjct 409 CTTATAAACTGTCCAAGAGAAAACCTGACGACAACCTCTTCTTACTTCACACCATTCTTT 468
Query 618 TTGGGAAGAAA-GCAAAGGCACAGATGGTTAAGAGAAACATTGGTCAATTTTCTGGCTTT 676
|| || ||| | ||||||||||||| | |||| ||||||||| || ||||| || |||
Sbjct 469 ACGGCAA-AAAGGGAAAGGCACAGATGCTGAAGAAAAACATTGGCCAGTTTTCGGGTTTT 527
Query 677 GCCTGGTCAGAGAAAGAGGAGGAGAAGCAGAGAGCACGA-ATAAAAGAGAAGATTGACAA 735
| ||||||||| |||||||||||||||| |||||| || | || |||||| |||| ||
Sbjct 528 GTATGGTCAGAGCAAGAGGAGGAGAAGCAAAGAGCAAGAGCT-AAGGAGAAGCTTGAGAA 586
Query 736 ATGCGTAAAAGAAAAATTGATTGTTTTTTGTGATGTGCTTGATATCCCTATAAGCAGAAG 795
||| | |||||||| ||||||| ||| ||||||||||||||||| || |||| || |||
Sbjct 587 ATGTATCAAAGAAAAGTTGATTGATTTCTGTGATGTGCTTGATATACCAATAAACAAAAG 646
Query 796 TAAC-GTGAAAAAAGAAGAACTAGCTGTCAA-AGTGCTTGAATTTTTGGAAT-CTCCCAA 852
| || |||||||| |||||||| ||||| || ||||||||||||||||| || | |||||
Sbjct 647 T-ACTGTGAAAAAGGAAGAACTGGCTGT-AAGAGTGCTTGAATTTTTGGTATGC-CCCAA 703
Query 853 GGAAACTAGAGATGTTATAATTGCTGATCA-AGAAAAGCAGGCGAAAAAGCGC---AAGA 908
| ||| || ||| || || |||||||| | |||||| | | ||||||||| ||||
Sbjct 704 AGCAACAAGGGATATTCTACTTGCTGAT-AGTGAAAAGGAAACTAAAAAGCGCAAGAAGA 762
Query 909 GTACACC-AAAAAGGGGGAAATCTGGAGAATCTTCGGACAC-CCCTGCCAAGAGGA-AA- 964
| ||||| || || | || ||||||||||| || || | |||||||||||||| ||
Sbjct 763 GCACACCGAAGAA-CGTGACCTCTGGAGAATCATCAGA-TCTCCCTGCCAAGAGGAGAAG 820
Query 965 --AGGC--A-AA--CT--AAA-AAGCGAGATCTTCCATCTGACACGGAAGAAGGCAA-GG 1013
|||| | || || ||| || | ||| | ||| |||| || ||||| || ||
Sbjct 821 GCAGGCGAAGAATTCTGGAAAGAAACAAGAACAGCCAACTGAGAC---TGAAGGAAACGG 877
Query 1014 ATGAGGGAGATGCTGACTCTGAAGGAACTAATGATC-CTCATGAAGAAGATGATGCAGCG 1072
||||| |||| || || |||||||| ||||| | |||||| ||||||||||| |||
Sbjct 878 -TGAGGCTGATGTTGGTTCCGAAGGAACAAATGA-CTCTCATGGAGAAGATGATGTAGCT 935
Query 1073 CCAGAGGAAGAAAGTGAC---CATGAAAAGACTGACACTGACGATGAGAAAGATGAAG-T 1128
||||||||||||| || ||||| | || || ||||| |||||||||||| |||
Sbjct 936 CCAGAGGAAGAAAACAACAAAAATGAAGATACCGAAACTGAAGATGAGAAAGATAAAGCC 995
Query 1129 AGAGGTTG-AGA--AA-CCATCCAAGAAGAAAAGCTCATCGAAAAA-GACTGTAG-AGGA 1182
| ||| | ||| || || |||| |||||||||| || ||||| |||| || ||||
Sbjct 996 A-AGG-AGAAGACTAAGTCAACCAATAAGAAAAGCTTGTC-AAAAAGGACT-AAGAAGGA 1051
Query 1183 GAGTTCAGGGTCCAAAGGT-AAGGATAAGCAACCTTCTGCCAAAGGTTCTGCAAGATCT- 1240
|| || | | || | || || || || ||| ||||||||||||| ||||
Sbjct 1052 GAAACCA--G--C--AGCTGAA-GAGGAG-AA--ATCTATTAAAGGTTCTGCAAAATCTA 1101
Query 1241 GGGGAAAAGTCCTCCAAACAAATTGCTAAGTCAACTTCATC-CCCAGCTAAGAAGCAAAA 1299
| | ||||||||||| |||||| | ||| ||||||||||| | ||| |||||||||||
Sbjct 1102 GTCG-AAAGTCCTCCAGACAAATCGATAAATCAACTTCATCATCAAGC-AAGAAGCAAAA 1159
Query 1300 AGTTGATCACGTTGAGTCTTCTAAAGAGAAAAGCAAGAAACAGCCGAGTAAGCCACAGGC 1359
|||||| | | || || |||||||||||| |||||| |||| | ||||| ||||||||
Sbjct 1160 GGTTGATAAAGACGATTCCTCTAAAGAGAAAGGCAAGACACAGACAAGTAAACCACAGGC 1219
Query 1360 TAAGGGATCTAAAGAGAAAGGAAAAGCCAC-TAAGAAAGGCAAAGCCAAAGCAGAGCCCA 1418
|||||||| ||||| |||||||| || | ||||||||| ||| |||| | | ||||
Sbjct 1220 AAAGGGATCCAAAGATCAAGGAAAATCC-CGTAAGAAAGGTAAA---AAAG-A-A-CCCA 1272
Query 1419 CCAGAAAAGAGA-TGCTTGAAGTGGTGTCCAAAATTCTGAAGGAAGTAGACTTCAATACG 1477
| | |||||| | ||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 1273 CAAAAAAAGA-ACTGCATGTGGTGGTGGCCAAAATTCTGAAGGAAGTAGACTTCAATACG 1331
Query 1478 GCAACACTATCAGATATTCTGCAGAAGCTAAGTGA-CCATTTTGGTGTCGAGCTG-TCGC 1535
||||| ||||| |||||| ||| |||||| | || ||||||||| || || || | ||
Sbjct 1332 GCAACTCTATCTGATATTTTGCGGAAGCTTGG-GAGCCATTTTGGAGTTGATCTTAT-GC 1389
Query 1536 ATAGAAAACCAGAGGTGAAGGATGTTATCACAGAGGCCATAAATGCAATGACtgatgatg 1595
|||||||| |||||||||||||| | || ||||| ||||| || | ||||| ||||||||
Sbjct 1390 ATAGAAAAGCAGAGGTGAAGGATATCATTACAGATGCCATTAACGAAATGAGTGATGATG 1449
Query 1596 aagaagaa 1603
| || |||
Sbjct 1450 ATGA-GAA 1456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73933165545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5