BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63560.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496545 jgi|Araly1|496545|fgenesh2_kg.8__2361__AT5G63560.1 2338 0.0
> Ahg496545 jgi|Araly1|496545|fgenesh2_kg.8__2361__AT5G63560.1
Length=1494
Score = 2338 bits (1266), Expect = 0.0
Identities = 1427/1503 (95%), Gaps = 18/1503 (1%)
Strand=Plus/Plus
Query 1 ATCTTTGGTTTTTCTTCACTGACAAAACCCCTAAAAATGGCCGACTCATTCGAGCTAATT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATCTTTGGTTTTTCTTCGTTGACAAAACCCCTAAAAATGGCCGACTCATTCGAGCTCATC 60
Query 61 GTAACCCGAAAAGAACCTGTTCTCGTCTCTCCAGCCTCCGAAACTCCAAAAGGTCTCCAT 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 GTAACCCGAAAAGAACCTGTTCTCGTCTCTCCAGCCTCCGGAACTCCAAAAGGTCTCCAT 120
Query 121 TATCTCTCAAATCTCGATCAAAACATCGCCATCATTGTCAAAACATTCTACTACTTCAAA 180
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TATCTATCAAATCTCGATCAAAACATCGCCATCATCGTCAAAACATTCTACTACTTCAAA 180
Query 181 TCAAACTCAAGATCCAACGAAGAATCCTATGAAGTCATCAAGAAGTCACTCTCCGAGGTT 240
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 181 TCAAACTCAAGATCCAACGAGGAATCCTGTGAAGTCATCAAGAAGTCACTCTCCGAGGTT 240
Query 241 CTCGTTCACTACTATCCTGCCGCAGGGAGACTCACGATCAGTCCTGAAGGAAAGATCGCT 300
|| ||||||||||||||||| || ||||||||||||||||| || ||||| ||||| |||
Sbjct 241 CTTGTTCACTACTATCCTGCTGCCGGGAGACTCACGATCAGCCCCGAAGGCAAGATTGCT 300
Query 301 GTGGATTGCACCGGAGAAGGAGTTGTAGTGGTGGAAGCTGAGGCCAATTGTGGGATAGAG 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GTGGATTGCACCGGAGAAGGAGTTGTCGTGGTGGAAGCTGAGGCCAATTGTGGGATAGAG 360
Query 361 AAGATAAAGAAGGCTATATCGGAGATTGATCAACCAGAGACTCTTGAAAAGTTGGTTTAC 420
||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 361 AAGATCAAGAAGGCTATATCGGAGATTGATCAACCGGAGACTCTTGAAAAGCTGGTTTTT 420
Query 421 GACGTTCCCGGTGCTCGGAATATTCTCGAGATTCCTCCAGTGGTTGTTCAGGTGACAAAT 480
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 421 GACGTTCCCGGTGCTCGGAATATTCTTGAGATTCCGCCAGTGGTTGTTCAGGTGACAAAT 480
Query 481 TTCAAGTGTGGAGGGTTCGTGCTAGGACTAGGCATGAACCACAATATGTTCGATGGTATC 540
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTCAAATGTGGAGGATTCGTGCTAGGACTAGGCATGAACCACAATATGTTCGATGGTATT 540
Query 541 GCAGCCATGGAGTTCCTCAACTCTTGGGCCGAGACGGCTCGTGGCCTTCCTCTCTCCGTT 600
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 541 GCAGCTATGGAGTTCCTCAACTCTTGGGCCGAGACGGCTCGTGGCCTCCCTCTCTCCCTT 600
Query 601 CCACCTTTCTTGGACCGCACACTTCTCCGACCACGAACCCCACCAAAGATCGAATTCCCA 660
|||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||
Sbjct 601 CCACCTTTCTTGGACCGCACACTTCTACGACCACGAATCCCACCGAAGATCGAATTCCCA 660
Query 661 CACAACGAGTTCGAGGACCTCGAAGACATCTCCGGCACCGGAAAACTCTACTCCGACGAG 720
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CACAACGAGTTTGAGGACCTCGAAGACATCTCCGGCACCGGAAAACTCTACTCCGACGAG 720
Query 721 AAACTCGTCTACAAATCCTTCCTCTTCGGACCCGAAAAACTCGAGAGGCTTAAGATCATG 780
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 AAACTCGTCTACAAATCCTTCCTCTTCGGACCCGAAAAACTCGAGAGGCTCAAGATCATG 780
Query 781 GCAGAGACGA-GATCCACGACTTTTCAAACCCTAACCGGGTTTCTGTGGAGAGCTCGTTG 839
|||||||| | | ||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 781 GCAGAGACAAAG-TCCACGACTTTTCAAACCCTAACTGGATTTCTATGGAGAGCTCGTTG 839
Query 840 TCAAGCCTTAGGGCTTAAACCTGATCAACGGATCAAGCTTCTCTTTGCTGCAGATGGAAG 899
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 840 TCAAGCCTTAGGGCTTAAACCAGATCAACGGATCAAACTTCTCTTTGCTGCAGATGGACG 899
Query 900 GTCGAGATTCGTTCC--GGAACTTCCTAAAGGATATTCCGGTAACGGGATTGTGTTCACT 957
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTCGAGATT--TTCCCCGGAACTTCCTAAAGGATATTCCGGTAACGGGATTGTGTTCACT 957
Query 958 TATTGCGTTACAACGGCAGGTGAAGTGACTTTAAACCCTCTTTCTCATTCAGTGTGTTTG 1017
||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||
Sbjct 958 TATTGCGTTACAACGGCTGGTGAAGTGACTTTAAACCCTCTTTCTCATTCGGTGGGTTTG 1017
Query 1018 GTCAAAAGAGCCGTTGAAATGGTCAACGACGGTTTCATGAGGTCAGCGATTGATTACTTT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GTCAAAAGAGCCGTTGAAATGGTCAACGACGGTTTCATGAGGTCAGCGATTGATTACTTT 1077
Query 1078 GAGGTGACTCGAGCTAGGCCGAGCCTAACGGCAACACTTCTGATCACGTCGTGGGCAAAA 1137
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1078 GAGGTGACTCGAGCTAGGCCGAGTCTAACGGCAACACTTCTGATCACGTCGTGGGCAAAA 1137
Query 1138 CTGTCGTTTCATACTAAGGATTTCGGTTGGGGTGAACCGGTTGTATCTGGACCGGTCGGT 1197
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1138 CTGTCGTTTCATACTAAGGATTTCGGTTGGGGTGAACCGGTTGTGTCTGGACCGGTCGGT 1197
Query 1198 TTACCTGAGAAGGAAGTGATTCTGTTTCTGCCATGTGGTAGTGACACGAAGAGTATCAAT 1257
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1198 TTACCTGAGAAGGAAGTGATTCTGTTTCTGCCATGTGGCAGTGACACGAAGAGTATCAAT 1257
Query 1258 GTGCTGCTTGGACTTCCTGGCTCGGCTATGAAAGTGTTCCAAGGGATTATGGATATATGA 1317
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1258 GTGCTGCTTGGACTTCCTGGCTCGGCTATGAAAGTGTTCCAAGGGCTTATGGATATATGA 1317
Query 1318 ATCATTAAAATTATTTATGGTTTAATGTTTGAATTTAAATTAACTATGATTTAAAAAGCA 1377
|| |||||| |||||||||||||| ||| ||||||| |||||| |||| ||| |||||||
Sbjct 1318 ATGATTAAA-TTATTTATGGTTTA-TGTATGAATTTGAATTAAGTATGCTTTCAAAAGCA 1375
Query 1378 AATAATGATGATATATCAATTACGTGTTTGTGGTCGTATG-AA---AT-ATTGTTCGTCG 1432
|||||||| ||| |||||||||||||||||||||||| || || |||| ||||||
Sbjct 1376 AATAATGACGAT----CAATTACGTGTTTGTGGTCGTATGTAATGTATTATTGCTCGTCG 1431
Query 1433 GTGGAGCAAAAATGTAACTAAGATGTTAAAGTATCAA-GTTTAATAAAGAAAGCTATTGT 1491
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1432 GTGGAGCAAAAATGTAACTAAGATGTTAAAGTATCAAAGTTTAATAAAGAAAGGTATTGT 1491
Query 1492 GTT 1494
|||
Sbjct 1492 GTT 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5