BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63570.1
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496546 jgi|Araly1|496546|fgenesh2_kg.8__2362__AT5G63570.1 2529 0.0
Ahg937638 jgi|Araly1|937638|scaffold_501829.1 1293 0.0
> Ahg496546 jgi|Araly1|496546|fgenesh2_kg.8__2362__AT5G63570.1
Length=1681
Score = 2529 bits (1369), Expect = 0.0
Identities = 1599/1704 (94%), Gaps = 40/1704 (2%)
Strand=Plus/Plus
Query 17 AATCATAAGCCCACCCACTTCGATTACCAACTCCGACCGCCAGAGACAGCGAGTTTCAGA 76
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1 AATCAGAAGCCCACCCACTTCGATTACCAACTCCGACCGCCAGAGACAGCGAGCTTCAAA 60
Query 77 TCAAAGATGTCGGCGACGCTTACAGGATCGGGAACTGCTTTGGGGTTTTCGTGTTCCTCG 136
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCAACGATGTCGGCGACGCTTACAGGATCGGGAACTGCTTTGGGGTTTTCGTGTTCCTCA 120
Query 137 AAGATCTCGAAAAGAGTTTCTTCTTCACCAG-CTTCTAACCGATGCTGCATCAAGATGTC 195
||||||||||||||| |||||||||| || | ||||||| ||||||||||||||||||||
Sbjct 121 AAGATCTCGAAAAGAATTTCTTCTTCGCC-GTCTTCTAATCGATGCTGCATCAAGATGTC 179
Query 196 TGTTTCCGTCGACGAGAAGAAGAAAAGTTTCAGTCTTCAGAAATCTGAGGAAGCTTTCAA 255
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 180 TGTTTCCGTCGACGAGAAGAAGAAAAGTTTCACTCTTCAGAAATCCGAGGAAGCTTTCAA 239
Query 256 TGCTGCTAAGAATCTAATGCCTGGAGGTGTGAATTCCCCTGTTCGAGCATTCAAATCCGT 315
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 TGCTGCTAAGAATCTAATGCCTGGAGGTGTGAATTCCCCTGTTCGAGCCTTCAAATCCGT 299
Query 316 TGGTGGACAACCTGTTTTGATTGATTCTGTTAAAGGCTCAAAAATGTGGGACATTGATGG 375
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 TGGTGGACAACCTGTTTTGATTGATTCCGTTAAAGGCTCAAAAATGTGGGACATTGATGG 359
Query 376 AAATGAGTATATTGACTACGTTGGCTCTTGGGGACCTGCTATTATTGGCCATGCTGATGA 435
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 360 AAATGAGTACATTGACTACGTTGGCTCTTGGGGACCAGCTATTATTGGCCATGCCGATGA 419
Query 436 CGAGGTTCTTGCGGCTCTAGCTGAGACGATGAAGAAAGGAACAAGCTTTGGTGCTCCTTG 495
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGAGGTTCTTGCAGCTTTAGCTGAGACGATGAAGAAAGGAACAAGCTTTGGTGCTCCTTG 479
Query 496 TCTCTTGGAGAATGTTTTAGCTGAGATGGTTATATCAGCTGTTCCCAGCATTGAAATGGT 555
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTCTTAGAGAATGTTTTAGCTGAGATGGTTATATCAGCTGTTCCCAGCATTGAAATGGT 539
Query 556 TCGGTTTGTTAATTCTGGTACTGAAGCGTGTATGGGTGTGCTTCGTCTTGCCAGAGCTTT 615
||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 540 TCGGTTTGTCAACTCTGGTACTGAAGCGTGTATGGGTGTGCTCCGTCTCGCCAGAGCTTT 599
Query 616 CACTAACAAAGAGAAGTTCATTAAGTTTGAAGGGTGTTATCACGGTCATGCTAACGCCTT 675
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 CACTAACAAAGAGAAATTCATCAAGTTTGAAGGGTGTTATCACGGTCATGCTAACGCCTT 659
Query 676 CCTTGTTAAAGCTGGTAGTGGTGTTGCCACTTTGGGGCTACCGGACTCTCCAGGTGTCCC 735
||||||||||||||||| ||||| |||||| | |||||||||||||| |||||||||||
Sbjct 660 TCTTGTTAAAGCTGGTAGCGGTGTAGCCACTCTAGGGCTACCGGACTCACCAGGTGTCCC 719
Query 736 TAAAGCAGCTACTTCAGATACTTTAACAGCTCCGTACAATGATCTTGAAGCTGTTGAGAA 795
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 720 TAAAGCAGCTACTTCTGATACTTTAACAGCTCCGTACAACGATCTCGAAGCTGTTGAGAA 779
Query 796 GCTCTTTGCTGCGCATAAAGGGGAGATTTCTGCGGTAATTCTCGAACCTGTTGTTGGTAA 855
||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 780 GCTCTTTGCAGCGCATAAAGGGGAGATTTCTGCGGTTATTCTCGAACCCGTTGTTGGTAA 839
Query 856 CTCCGGATTCATCCCTCCTACTCCGGAATTCATCAACGGTTTACGCCAGCTTACTAAAGA 915
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTCTGGATTCATCCCTCCTACACCGGAATTCATCAACGGTTTACGCCAGCTTACTAAAGA 899
Query 916 CAATGGTGTTCTTCTCATCTTCGATGAAGTCATGACTGGATTTCGTCTAGCCTATGGTGG 975
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 CAATGGTGTTCTTCTCATCTTCGATGAAGTCATGACCGGATTTCGTCTAGCCTATGGTGG 959
Query 976 AGCCCAAGAATACTTTGGAATCACGCCTGATCTAACTACTCTTGGTAAAATTATTGGTGG 1035
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 AGCCCAAGAATACTTCGGAATCACGCCTGATCTAACTACTCTTGGTAAAATTATTGGCGG 1019
Query 1036 GGGTCTTCCCGTGGGAGCATACGGTGGTAGACGTGATATTATGGAGATGGTTGCTCCCGC 1095
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1020 GGGTCTTCCCGTGGGAGCATACGGTGGGAGACGTGATATTATGGAGATGGTTGCGCCCGC 1079
Query 1096 TGGACCAATGTACCAAGCCGGGACTCTAAGTGGTAATCCGCTGGCAATGACTGCAGGGAT 1155
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGGACCAATGTACCAAGCTGGGACTCTAAGTGGTAATCCGCTGGCAATGACTGCAGGGAT 1139
Query 1156 TCACACGCTGAAGCGGCTAAAGCAGGCAGGAACATATGAGTATTTAGACAAGATCACGAA 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 TCACACGCTGAAGCGGCTAAAGCAGGCAGGAACATATGAGTATTTAGACAAGATCACAAA 1199
Query 1216 GGAACTAACCAACGGAATCTTAGAAGCCGGAAAGAAAACCGGGCATCCAATGTGCGGGGG 1275
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1200 GGAACTAACCAACGGAATCTTAGAAGCTGGAAAGAAAACCGGGCATCCAATGTGCGGCGG 1259
Query 1276 TTACATAAGCGGTATGTTTGGATTCTTTTTCGCAGAAGGACCGGTTTACAACTTTGCAGA 1335
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 TTATATAAGCGGTATGTTTGGTTTCTTTTTCGCAGAAGGACCGGTCTACAACTTTGCAGA 1319
Query 1336 CT-CAAAGAAGAGCGACACAGAGAAGTTTGGTAGGTTTTTCAGGGGAATGTTGGAAGAAG 1394
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 -TGCAAAGAAGAGCGACACCGAGAAGTTTGGTAGGTTTTTCAGGGGAATGTTGGAAGAAG 1378
Query 1395 GTGTTTACTTTGCACCGTCTCAGTTTGAGGCCGGGTTTACGAGCTTGGCTCACACTCCCG 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GTGTTTACTTTGCACCGTCTCAGTTTGAGGCCGGGTTTACGAGCTTGGCTCACACTCCCG 1438
Query 1455 AGGATATACAGTTAACAATTGCTGCGGCTGAGAGGGTACTGAGTAGGATCTAGAATGTTC 1514
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1439 AGGATATACAGTTCACGATTGCTGCGGCTGAGAGGGTACTCAGTAGGATCTAGAATGTTC 1498
Query 1515 CCAACCCTGAGTCTAGTTTCACAATCTTCATGTTTTGGGGACGATGTGTATGGTTTGATG 1574
|||||||||||||||| ||||||||||| ||| ||| || ||| |
Sbjct 1499 CCAACCCTGAGTCTAGCTTCACAATCTT-ATGCTTT--------TG---ATG-----A-- 1539
Query 1575 AGCGGATGGAATAATTCTTGTGTAGTGAGTTGAATTTTGTTT-CAT------CA--G-TA 1624
| |||||| ||||||||||||||||||||||||||||||||| | | || | ||
Sbjct 1540 A-CGGATGAAATAATTCTTGTGTAGTGAGTTGAATTTTGTTTTCTTTTGTTTCATCGATA 1598
Query 1625 GAGCTTGAGATTTTTTGTATTTTAAGATCATCTGTT-----AATGTAATGGTTTTATGTT 1679
||| ||||| ||||| ||||| | |||||||||||| |||||||||||||||||||
Sbjct 1599 GAGGTTGAGGTTTTT-GTATTGTCAGATCATCTGTTCTGTTAATGTAATGGTTTTATGTT 1657
Query 1680 ATCTCCTAAAGAAATATTGCTTTT 1703
|||||||| |||||||||||||||
Sbjct 1658 ATCTCCTAGAGAAATATTGCTTTT 1681
> Ahg937638 jgi|Araly1|937638|scaffold_501829.1
Length=1473
Score = 1293 bits (700), Expect = 0.0
Identities = 1210/1455 (83%), Gaps = 40/1455 (3%)
Strand=Plus/Plus
Query 83 ATGTCGGCGACGCTTACAGGATC-GGGAACTGCTTTGGGGTTTTCGTGTTCCTCGAAGAT 141
||| ||||||||||||||||||| ||| | |||| | ||||||||||||||| | ||| |
Sbjct 21 ATGGCGGCGACGCTTACAGGATCAGGG-ATTGCTCTAGGGTTTTCGTGTTCCGCTAAGTT 79
Query 142 CTCGAAAAGAG--T-TTCTTCTTC-AC--CAG-CTTCTAACCGAT-GCTGCATCAAGATG 193
||| || |||| | ||||||||| | | | | || ||||| | ||||||||||||||
Sbjct 80 CTCTAAGAGAGCCTCTTCTTCTTCTTCGTC-GTCGTCCAACCG-TCGCTGCATCAAGATG 137
Query 194 TCTGTTTCCGTCGACGAGAAGAA-GAA-AAGTTTCAGTCTTCAGAAATCTGAGGAAGCTT 251
|| ||||| || || ||||| || ||| ||| |||| |||||||||||||||||||||||
Sbjct 138 TCAGTTTCAGTAGAAGAGAA-AACGAAGAAG-TTCACTCTTCAGAAATCTGAGGAAGCTT 195
Query 252 TCAATGCTGCTAAGAATC-TAATGCCTGGAGGTGTGAATTCCCCTGTTCGAGCATTCAAA 310
|||||||||| ||||| | ||||||||||||||||||| || ||||| || || ||||||
Sbjct 196 TCAATGCTGCCAAGAA-CTTAATGCCTGGAGGTGTGAACTCACCTGTACGTGCTTTCAAA 254
Query 311 TCCGTTGGTGGACAACCTGTTTTGATTGATTCTGTTAAA-GGCTCAAAAATGTGGGACAT 369
|| |||||||||||||| ||| |||| ||||||| ||| || ||| ||| | |||||
Sbjct 255 TCTGTTGGTGGACAACCAGTTGTGATGGATTCTG-CAAAGGGTTCACGAATAAGAGACAT 313
Query 370 TGATGGAAATGAGTATATTGACTACGTTGGCTCTTGGGGACCTGCTATTATTGGCCATGC 429
|||||||||||| || ||||| || ||||| ||||||||||| ||||| ||||| |||||
Sbjct 314 TGATGGAAATGAATACATTGATTATGTTGGTTCTTGGGGACCAGCTATAATTGGTCATGC 373
Query 430 TGATGACGAGGTTCTTGCGGCTCTAGCTGAGACGATGAAGAAAGGAACAAGCTTTGGTGC 489
|||||| ||||||||||| ||| | |||||||| ||||||||||||||||||||||||||
Sbjct 374 TGATGATGAGGTTCTTGCAGCTTTGGCTGAGACAATGAAGAAAGGAACAAGCTTTGGTGC 433
Query 490 TCCTTGTCTCTTGGAGAATGTT-TTAGCTGAGATGGTTATATCAGCTGTTCCCAGCATTG 548
|||||||||||| ||||||||| || ||||||||||| || ||||||||||| || ||||
Sbjct 434 TCCTTGTCTCTTAGAGAATGTTCTT-GCTGAGATGGTGATTTCAGCTGTTCCAAGTATTG 492
Query 549 AAATGGTTCGGTTTGTTAATTCTGGTACTGAAGCGTGTATGGGTGTGCTTCGTCTTGC-C 607
||||||||||||||||||| || ||||| || || |||||||| ||||| |||||||| |
Sbjct 493 AAATGGTTCGGTTTGTTAACTCGGGTACGGAGGCATGTATGGGCGTGCTACGTCTTGCTC 552
Query 608 AGAGCTTTCACTAAC-AAAGAGAAGTTCATTAAGTTTGAAGGGTGTTATCACGGTCATGC 666
| || ||||| | ||| | |||||||| ||||| ||||| |||||||| ||||||||
Sbjct 553 -GTGCCTTCAC-AGGGAAACAAAAGTTCATCAAGTTCGAAGGTTGTTATCATGGTCATGC 610
Query 667 TAACGCCTTCCTTGTTAAAGCTGGTAGTGGTGTTGCCACTTTGGGGCTACCGGACTCTCC 726
||| | |||||||| ||||| ||||||||||| || |||||||| ||||| ||||| ||
Sbjct 611 AAACTCTTTCCTTGTCAAAGCAGGTAGTGGTGTCGCTACTTTGGGTCTACCTGACTCGCC 670
Query 727 AGGTGTCCCTAAAGCAGCTACTTCAGATACTTTAACAGCTCCGTACAATGATCTTGAAGC 786
|||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||| ||
Sbjct 671 TGGTGTCCCTAAATCAGCTACTTCAGATACTCTAACAGCTCCTTACAATGATATTGCTGC 730
Query 787 TGTTGAGAAGCTCTTTGCTGCGCATAAAGGGGAGATTTCTGCGGTAATTCTCGAACCTGT 846
||||||| |||| |||| || | ||||| ||||| ||||| | ||||| ||||||||
Sbjct 731 TGTTGAGCAGCTTTTTGAGGCAAACAAAGGCGAGATAGCTGCGATCATTCTTGAACCTGT 790
Query 847 TGTTGGTAACTCCGGATTCATCCCTCCTACTCCGGAATTCATCAACGGTTTACGCCAGCT 906
|||||||||||| || || || | |||| || || ||||| | || |||||| | |
Sbjct 791 TGTTGGTAACTCGGGTTTTATTACACCTAAACCAGAGTTCATTGAGGGAATACGCCGGAT 850
Query 907 TACTAAAGACAATGGTGTTCTTCTCATCTTCGATGAAGTCATGACTGGATTTC-GTCTAG 965
||||||||||||||||| |||||| || ||||||||||||||||| || |||| || |||
Sbjct 851 TACTAAAGACAATGGTGCTCTTCTTATTTTCGATGAAGTCATGACGGG-TTTCCGTTTAG 909
Query 966 CCTATGGTGGAGCCCAAGAATACTTTGGAATCACGCCTGATCT-AACTACTCTTGGTAAA 1024
||||||||||||| |||||||||||||||||||| ||||| || ||| |||||||| |||
Sbjct 910 CCTATGGTGGAGCTCAAGAATACTTTGGAATCACACCTGA-CTTAACAACTCTTGGGAAA 968
Query 1025 ATTATTGGTGGGGGTCTTCCCGTGGGAGCATACGGTGGTAGACGTGATATTATGGAGATG 1084
|| || ||||| |||||||| ||||||||||||||||| ||| | || || ||||| |||
Sbjct 969 ATCATCGGTGGTGGTCTTCCTGTGGGAGCATACGGTGGAAGAAGAGACATCATGGAAATG 1028
Query 1085 GTTGCTCCCGCTGGACCAATGTACCAAGCCGGGACTCTAAGTGGTAATCCGCTGGCAATG 1144
||||| ||||| ||||| ||||| ||||| || || |||||||||||||||||||| |||
Sbjct 1029 GTTGCACCCGCAGGACCGATGTATCAAGCTGGTACGCTAAGTGGTAATCCGCTGGCTATG 1088
Query 1145 ACTGCAGGG-ATTCACACGCTGAAGCGGCTAAAG-CAGGCAGGAACATATGAGTATTTAG 1202
|| || ||| |||||||| ||||||||| ||| | ||| | || |||||||| || ||||
Sbjct 1089 ACAGC-GGGTATTCACACACTGAAGCGGTTAA-GTCAGCCTGGGACATATGAATACTTAG 1146
Query 1203 ACAAGATCACGAAGGAACTAACCAACGGAAT-CTTAGAAGCCGGAAAGAAAACCGGGCAT 1261
|||||||||| ||||| || || || || || || ||||||||| |||||||| ||||||
Sbjct 1147 ACAAGATCACAAAGGAGCTTACAAATGGGATACT-AGAAGCCGGGAAGAAAACGGGGCAT 1205
Query 1262 CCAATGTGCGGGGGTTACATAAGCGGTATGTTTGGATTCTTTTTCGCAGAAGGACCGGTT 1321
| ||||| || || |||||||| || ||||| || ||||| ||| | |||||||| ||
Sbjct 1206 GCGATGTGTGGTGGATACATAAGTGGGATGTTCGGTTTCTTCTTCACTGAAGGACCCGTC 1265
Query 1322 TACAACTT-TGCAGACT-CAAAGAAGAGCGACACAGAGAAGTTTGGTAGGTTTTTCAGGG 1379
||| | || | | || | | ||||||||||| |||||||||||||| | ||||||||| |
Sbjct 1266 TACGATTTCT-CGGA-TGCCAAGAAGAGCGATACAGAGAAGTTTGGAAAGTTTTTCAGAG 1323
Query 1380 GAATGTTGGAAGAAGGTGTTTACTTTGCACCGTCTCAGTTTGAGGCCGGGTTTACGAGCT 1439
||||||||||||||||||| ||||| ||||| ||||| || |||||||| ||||| ||||
Sbjct 1324 GAATGTTGGAAGAAGGTGTCTACTTGGCACCTTCTCAATTCGAGGCCGGTTTTACCAGCT 1383
Query 1440 TGGCTCACACTCCCGAGGATATACAGTTAACAATTGCTGCGGCTGAGAGGGTACTGAGTA 1499
||||||| ||| | || || || || || || || || ||||| |||| ||| || |||
Sbjct 1384 TGGCTCATACTTCAGAAGACATCCAATTCACTATCGCAGCGGCCGAGAAGGTTCTAAGTC 1443
Query 1500 GGATCTAGAATGTTC 1514
||||||| |||||||
Sbjct 1444 GGATCTAAAATGTTC 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64829596990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5