BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63580.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332580 jgi|Araly1|332580|fgenesh1_pm.C_scaffold_8001923 1389 0.0
> Ahg332580 jgi|Araly1|332580|fgenesh1_pm.C_scaffold_8001923
Length=933
Score = 1389 bits (752), Expect = 0.0
Identities = 874/934 (94%), Gaps = 4/934 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGTTGAGAGAGATCAACACATTTCTCCACCATCTCTTATGGCCAAGACGATCCCT 60
|||||| | |||||||| |||||||||||||||||||||||| | ||| |||||||||||
Sbjct 1 ATGGAAATCGAGAGAGACCAACACATTTCTCCACCATCTCTTCTCGCCGAGACGATCCCT 60
Query 61 ATCATCGATCTAAGCAATCTTGACGAAGAGCTAGTGGCACATGCGGTGGTGAAAGGGAGT 120
||||||||||||||||||||||| |||||||||||||| | |||||||||| ||| ||||
Sbjct 61 ATCATCGATCTAAGCAATCTTGATGAAGAGCTAGTGGCGCGTGCGGTGGTGCAAGCGAGT 120
Query 121 GAAGAGTGGGGCATTTTTCACGTGGTTAATCACGGAATCCCGATGGATTTGATACAGCGG 180
||||||||||| |||||||||||||||||||| ||||| ||| ||||| |||||| ||||
Sbjct 121 GAAGAGTGGGGGATTTTTCACGTGGTTAATCATGGAATTCCGTTGGATCTGATACGGCGG 180
Query 181 TTGAAGGACGTTGGTACACAGTTCTTCGAGCTCCCGGAGACGGAGAAGAAAGCCGTAGCA 240
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 TTGAAGGAGGTTGGTACACAGTTCTTTGAGCTCCCGGAGACGGAGAAGAAAGCCGTAGCG 240
Query 241 AAACAAGATGGCTCCAAAGACTTCGAAGGTTACACGACGAATCTCAAGTATGTAAAAGGT 300
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 241 AAACAAGATGGCTCCAAAGACTTTGAAGGTTACACGACGAATCTCAAGTATGTAGAAGGA 300
Query 301 GAGGTTTGGACCGAGAATCTTTTTCACAGAATCTGGCCACCGACGTGTATCAATTTTGAT 360
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 301 GAGGTTTGGACCGAGAATCTTTTTCACAGAATCTGGCCACCTTCGTGTATCAATTTTAAT 360
Query 361 TACTGGCCCAAGAATCCTCCTCAATACAGGGAAGTGATTGAGGAGTACACAAAGGAGACT 420
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 TACTGGCCCAAAAATCCTCCTCAATACAGGGAAGTGATTGAGGAGTACACAAAGGATACT 420
Query 421 AAGAAGCTATCCGAGAGGATTTTAGGGTATTTATCAGAGGGATTAGGGTTACCAAGTGAG 480
||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 421 AAGAAGCTATCAGAGAGGATTTTAGGGTATCTATCAGAGGGATTAGGGTTACCACGTGAG 480
Query 481 GCCTTGATACAAGGTCTCGGTGGGGAATCGACCGAGTATGTAATGAGGATCAACAATTAT 540
|||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||||
Sbjct 481 GCCTTGATACAAGGTCTCGGCGGCGAATCAACAGAGTATGTAATGAGGATGAACAATTAT 540
Query 541 CCTCCTGACCCGAAACCTGATTTGACTCTAGGAGTGCCGGAGCACACTGACATCATTGGA 600
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 CCTCCTGACCCGAAACCAGATTTGACTCTAGGAGTGCCGGAGCACACTGACATCATCGGA 600
Query 601 ATCACAATCATTATCACCAATGAAGTTCCAGGGCTTCAGATTTTCAAGGACGATCATTGG 660
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct 601 ATCACAATCATTATAACCAATGAAGTTCCAGGTCTTCAGATTTTCAAGGATGATCGTTGG 660
Query 661 TTAGATGTCCACTACATTCCCTCCTCTATAACCGTCAACATTGGCGATCAGATAAT--GG 718
|| |||||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 661 TTCGATGTCCACTACATTCCCTCAGCCATAACCGTCAACATTGGCGATCAGATAATGAGG 720
Query 719 CTGAGCAATGGAAAGTACAAGAATGTGTTGCATAGAGCGATAGTGGATAAGGAGAATCAA 778
||||||||| | ||||| |||||||||||||||||||| |||||||||| ||| || |||
Sbjct 721 CTGAGCAATTGCAAGTATAAGAATGTGTTGCATAGAGCCATAGTGGATAGGGAAAAGCAA 780
Query 779 AGGATGTCATGGCCGGTTTTTGTGGATGCTAATCCTGATGTGGTTATCGGACCATTGCCG 838
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 AGGATGTCATGGCCGGTTTTTGTGGATGCTAATCCTGATGTGGTCATCGGACCATTGCCG 840
Query 839 GAGCTCATTACCGGCGA-TAATCCATCAAAGTTCAAGCCTATTACTTGCAAGGACTTTAA 897
|||||||||||| || | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 841 GAGCTCATTACCTGC-AGTAATCCCTCAAAGTTCAAGCCTATTACTTGCAAGGACTTTAA 899
Query 898 GTACCGTAGGCTCCTCAAACTTCCTATCGAGTGA 931
||||||||||||||||||||||||||||||||||
Sbjct 900 GTACCGTAGGCTCCTCAAACTTCCTATCGAGTGA 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5