BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63590.1
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496548 jgi|Araly1|496548|fgenesh2_kg.8__2364__AT5G63590.1 1029 0.0
Ahg899865 jgi|Araly1|899865|Al_scaffold_0004_515 198 7e-50
> Ahg496548 jgi|Araly1|496548|fgenesh2_kg.8__2364__AT5G63590.1
Length=976
Score = 1029 bits (557), Expect = 0.0
Identities = 638/675 (95%), Gaps = 14/675 (2%)
Strand=Plus/Plus
Query 321 ATCTAGAAGGTAGAAACGCATGGGTGGATCATCTCTTTCACCGCATCTGGCCACCGTCTA 380
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 ATCTTGAAGGTAGAAACGCATGGGTGGATCATCTCTTTCACCGCATCTGGCCACCGTCTA 309
Query 381 GAGTCAATCACAAATTCTGGCCTAAGAATCCTCCAGAATACATTGAAGTGAATGAAGAGT 440
||||||| ||||||||||||||||||||||||| ||| ||||||||| || | | ||||
Sbjct 310 GAGTCAACCACAAATTCTGGCCTAAGAATCCTCGAGAGTACATTGAA-TG-A-G--GAGT 364
Query 441 ACGCAAGTCACATAAAGAAGCTATCGGAGAAAATCATGGAATGGTTATCAGAAGGACTAG 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 ACGCAAGTCACATAAAGAAGCTATCGGAGAAAATCATGGAATGGTTATCAGAAGGACTAG 424
Query 501 GTTTAAGGC-----A----TGAGGCGTTGAAGGAAGGTCTAGGCGGCGAAACGATTGAGT 551
||||||||| | |||||| ||||||||||||||||||||||||||| ||||||
Sbjct 425 GTTTAAGGCGTTTAAGGCGTGAGGCATTGAAGGAAGGTCTAGGCGGCGAAACGGTTGAGT 484
Query 552 ATCTAATGAAAATCAATTACTATCCGCCGTGTCCAGATCCGGAGTTAGTCGTGGGAGCTC 611
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 485 ATCTAATGAAGATCAATTACTATCCGCCGTGTCCAGATCCGGAGTTGGTCGTGGGAGCTC 544
Query 612 CTGATCACACTGATGTCAATGGAATCACACTCCTAGTCGCTAATGAAGCTTTAGGGCTTC 671
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 545 CCGATCACACTGATGTCAATGGAATCACACTCCTAGTCGCTAATGAGGCTTTAGGACTTC 604
Query 672 AAGCATTCAAAGATAACCAATGGATCGACGCGGAGTATACCACTTCCGGGATCATCGTCA 731
| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 605 AGGCATTCAAAGATAACCAATGGATCGACGCCAAGTATACCACTTCCGGGATCATTGTCA 664
Query 732 TCATCGGCGATCAATTCTTGAGAATGAGCAATGGGAAGTATAAGAGTGTGGAGCATAGGG 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TCATCGGCGATCAATTCTTGAGAATGAGCAATGGGAAGTATAAGAGTGTGGAGCATAGGG 724
Query 792 CGAAGATGGATAAGGAGAAGACGAGAATCTCGTGGCCGGTTTTTGTGGAATCTAGCCTTG 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 CGAAGATGGATAAGGAGAAGACGAGAATCTCGTGGCCGGTTTTTGTGGAATCTAGCCTTG 784
Query 852 ATCAAGTCTTCGGACCTTTGCCGGAGCTAATTACCGGTGATGAGAACGTTCCCAAGTTTA 911
|||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 785 ATCACGTCTTCGGACCTTTGCCAGAGCTAATTACCGGTGATGAGAACATTCCCAATTTTA 844
Query 912 AGCCTTATGTCTACAAAGACTACAAATTTCGTAAGCTTAAGAAGCTTCTTCTCGACTGAG 971
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 845 AGCCTTACGTCTACAAAGATTACAAATTTCGTAAGCTTAAGAAGCTTCTTCTCGAATGAG 904
Query 972 AAAATCTCATAATAA 986
||| |||||||||||
Sbjct 905 AAAGTCTCATAATAA 919
Score = 375 bits (203), Expect = 3e-103
Identities = 235/250 (94%), Gaps = 3/250 (1%)
Strand=Plus/Plus
Query 15 CGAAGCAGGAACGAGTGAAACTGAAAACCAT-GGAGATGGAGAAAAACCAACACATTTCT 73
|||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 CGAAGCAGAAAAGAGTGAAACTGAAAACCATGGGAGATGGAGAAAAACCAACACATTTCT 60
Query 74 TCGCTGGACATCCCCGTTATTGATCTAAGTAATCCCGATGAAGAGCTTGTGGCAAGTGCG 133
|| | |||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct 61 TCTCCGGACATCCCCGTCATTGATCTATGTAGTCCCGATGAAGAGCTTGTGGCAATTGCG 120
Query 134 GTGGTCAAAGCGAGCCAAGAGTGGGGAATATTTCAGGTGGTTAACCACGGAATCCCGACC 193
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GTGGTCAAAGCGAGCCAAGAGTGGGGGATATTTCAGGTGGTTAACCACGGAATCCCGACC 180
Query 194 GAGCTGATACTGCGGTTGCTACAAGTGGG-AATGGAGTTTTTCGAGCTACCGGAGACAGA 252
|||||||||||| |||||| | ||||||| || |||||||||||||||||||||||||||
Sbjct 181 GAGCTGATACTGAGGTTGCAAGAAGTGGGGAA-GGAGTTTTTCGAGCTACCGGAGACAGA 239
Query 253 GAAGGAAGCC 262
||||||||||
Sbjct 240 GAAGGAAGCC 249
Score = 76.8 bits (41), Expect = 3e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1047 AATTAATAAGTTTTATCTATTTATCAAATTACAGCATTGTTTGT 1090
|||||||||||||||||||||||||||||||||||||||| |||
Sbjct 933 AATTAATAAGTTTTATCTATTTATCAAATTACAGCATTGTGTGT 976
> Ahg899865 jgi|Araly1|899865|Al_scaffold_0004_515
Length=975
Score = 198 bits (107), Expect = 7e-50
Identities = 614/849 (72%), Gaps = 74/849 (9%)
Strand=Plus/Plus
Query 75 CGCTGGACATCCCCGTTATTGATCTAAGTAATCCCGATGAAGAGCTT-GT-G-GCAAGTG 131
||| |||| | ||||| |||||||||| | | |||||||| ||| | | || | ||
Sbjct 87 CGC-GGACGTTCCCGTCGTTGATCTAAGCGTTTCTGATGAAGA-CTTCTTGGTGC-A-TG 142
Query 132 CGGTGGTCAAAGCGAGCCAAGAGTGGGGAATATTTCAGGTGGTTAACCACGGAATCCCG- 190
|||||| |||||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 143 AGGTGGTGAAAGCGAGTGAAGAGTGGGGAATATTTCAGGTGGTTAACCACGGGATTCCGG 202
Query 191 ACCGAGCTGATACTGCGGTTGCTACAAGT-GGGAATGGAGTTTTTCGAGCTACCGGAGAC 249
| |||||||| | || | ||| | || ||||| |||||||||| || || ||| |
Sbjct 203 AG-GAGCTGATGCGGCAGCTGCAAGTGGTTGGGAAAC-AGTTTTTCGACCTCCCCGAGGC 260
Query 250 AGAGAAGGAAGCCGTAGCGAA-GCCAGAAGACTCCTTGGACATAGAAGGATACAGAACCA 308
||||||||| ||| ||||| | || |||| | | |||||||||| | |
Sbjct 261 GGAGAAGGAAATCGTGGCGAAAGATGGA-GACT--T----C---GAAGGATACA-AG--A 307
Query 309 AGTACCAGAAAGATCTAGAAGGTAGAAACG-CATGGGTGGATCATCTCTTTCACCG-CAT 366
| | || | ||||| ||||| |||| | |||| | ||||| |||||| | | |
Sbjct 308 GG-A--AGTA---TCTAGGAGGTATAAACAAC-TGGGACCAACATCTGTTTCACAGAC-T 359
Query 367 CTGGCCACCGTCTAG-AGTCAATCACAAAT-TCTGGCCTAAGAATCCTCCAGAATACATT 424
|| ||||| || | | ||||| | |||| | ||||||||||||||||| ||||||
Sbjct 360 CTCTCCACCCTCAATCA-TCAATTATAAATAT-TGGCCTAAGAATCCTCCTCAATACAGG 417
Query 425 GAAGTGAATGAAGAGTACGCAA-GTCACATAAAGAAGCTATCGGAGAAAAT-CATGGAAT 482
|| |||| ||| |||||| ||| | || || |||| |||| ||||||| || | ||| |
Sbjct 418 GAGGTGACTGAGGAGTACACAAAG-CATATGAAGAGGCTAACGGAGAAGATTCTTGGT-T 475
Query 483 GGTTATCAGAAGGACTAGGTTTAAGGCATGAGGCGTTGAAGGAAGGTCTAGGCGGCGAAA 542
|||||||||||||| |||| ||| || |||||| || | | || || |||| || ||||
Sbjct 476 GGTTATCAGAAGGATTAGGGTTACCGCGTGAGGCATTCACGCAAAGTATAGGTGGTGAAA 535
Query 543 CGATTGAGTATCTAATGAAAATCAATTACTATCCGCCGTGTCCAGA-TCCGGAGTTAGTC 601
|| |||||| | | | |||||| ||||||||| || ||| || ||| ||||||
Sbjct 536 CGGCAGAGTATGTTCTTAGGGTCAATTTCTATCCGCCAACTCAAGACTC-GGAATTAGTC 594
Query 602 GTGGGAGCTC-CTGATCACA-CTGATGTCAATGGAATCACACTCCTAGTCGCTAATGAAG 659
| ||||| | | | |||| | ||| | || |||| ||||| | || | ||||| |
Sbjct 595 ATAGGAGC-CGCGGCCCACAGC-GATATGGGTGCAATCGCACTCATCCTCCCGAATGAGG 652
Query 660 CTTTAGGG-CTTCAAGCATTCAAAGAT-AACCAATGGATCGACGCGGAG-TATACCA-CT 715
|| || |||||||| ||||| || ||| ||||| | ||| | | |||| || ||
Sbjct 653 -TTCCTGGACTTCAAGCCTTCAAGGACGAAC-AATGGTTGGAC-CTTAACTATATCAACT 709
Query 716 -T-CCG-GGATCATCGTCATCATCGGCGATCAATTCTTGAGAATGAGCAATGGGAAGTAT 772
| ||| || | | || |||||||| |||||| || |||| |||| ||| |||| || |
Sbjct 710 CTGCCGTGG-T--T-GTTATCATCGGTGATCAACTCATGAGGATGACCAACGGGAGGT-T 764
Query 773 -AAGAGTGTGGAGCATAGGGCGAAGATGGATAAGGAGAAGAC-GAGAATCTCGTGGCCGG 830
|||| ||| || || ||||||| ||||| ||| |||| ||| || || ||||| |
Sbjct 765 CAAGAACGTGCTTCACAGAGCGAAGACGGATACGGA-AAGATTGAGGATATCTTGGCCTG 823
Query 831 TTTTTGTGGAATCTAGC-CTTGATCAAGTCT-TCGGACCTTTGCCGGAGCTAATTACCGG 888
||||||||| || | || ||| | ||| ||||||||||||||||||| | |||||
Sbjct 824 TTTTTGTGGCGCCTCGGGCT-GAT-ATGTCCGTCGGACCTTTGCCGGAGCT--T-ACCGG 878
Query 889 TGATGAGAA 897
|| |||||
Sbjct 879 AGACGAGAA 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42850158708
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5