BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G63600.2
Length=1567
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899865 jgi|Araly1|899865|Al_scaffold_0004_515 1347 0.0
Ahg496549 jgi|Araly1|496549|fgenesh2_kg.8__2365__AT5G63600.1 1314 0.0
Ahg918141 jgi|Araly1|918141|Al_scaffold_0008_2892 909 0.0
> Ahg899865 jgi|Araly1|899865|Al_scaffold_0004_515
Length=975
Score = 1347 bits (729), Expect = 0.0
Identities = 904/987 (92%), Gaps = 18/987 (2%)
Strand=Plus/Plus
Query 189 ATGGAAGAAGAGAGAGACCACAATGC-ATCTGA-GTCGTCTCTCCCATCTTTGAGCAAGC 246
|||||||| |||||||||||| || | || | | | |||||||||||||||||||||||
Sbjct 1 ATGGAAGACGAGAGAGACCACGATACAAT-T-ACTTTGTCTCTCCCATCTTTGAGCAAGC 58
Query 247 AGTTGGAGAGCTCGACTCTTGGAGGAAGCGCGGTCGACGTTCCCGTCGTTGATCTAAGCG 306
| |||| | || | ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 59 AATTGGCGGGCACCACTCTTGGAGGAAGCGC-G--GACGTTCCCGTCGTTGATCTAAGCG 115
Query 307 TTTCTGATGAAGACTTCTTGGTGCGTGAGGTGGTGAAAGCGAGTGAAGAGTGGGGAGTTT 366
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 116 TTTCTGATGAAGACTTCTTGGTGCATGAGGTGGTGAAAGCGAGTGAAGAGTGGGGAATAT 175
Query 367 TTCAGGTGGTTAACCATGGGATTCC-AACCGAGCTGATGCGGCAGCTGCAAATGGTTGGT 425
|||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||
Sbjct 176 TTCAGGTGGTTAACCACGGGATTCCGGA-GGAGCTGATGCGGCAGCTGCAAGTGGTTGGG 234
Query 426 ACGCAGTTTTTCGAGCTCCCGGATGCTGAAAAGGAAACCGTGGCGAAAGA-GGAAGACTT 484
| ||||||||||| ||||| || || || ||||||| |||||||||||| || ||||||
Sbjct 235 AAACAGTTTTTCGACCTCCCCGAGGCGGAGAAGGAAATCGTGGCGAAAGATGG-AGACTT 293
Query 485 CGAAGGATACAAGAAGAATTATCTAGGAGGTATAAACAATTGGGACGAACATCTCTTTCA 544
|||||||||||||| ||| |||||||||||||||||||| |||||| ||||||| |||||
Sbjct 294 CGAAGGATACAAGAGGAAGTATCTAGGAGGTATAAACAACTGGGACCAACATCTGTTTCA 353
Query 545 CAGACTCTCTCCACCCTCAATTATCAATTATAAATATTGGCCTAAGAATCCTCCTCAATA 604
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 354 CAGACTCTCTCCACCCTCAATCATCAATTATAAATATTGGCCTAAGAATCCTCCTCAATA 413
Query 605 TAGGGAGGTGACGGAGGAGTATACAAAGCATATGAAGAGGCTAACGGAGAAGATTCTTGG 664
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 414 CAGGGAGGTGACTGAGGAGTACACAAAGCATATGAAGAGGCTAACGGAGAAGATTCTTGG 473
Query 665 TTGGTTATCAGAGGGATTAGGGTTACAGCGTGAGACGTTCACGCAAAGTATAGGTGGTGA 724
|||||||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 474 TTGGTTATCAGAAGGATTAGGGTTACCGCGTGAGGCATTCACGCAAAGTATAGGTGGTGA 533
Query 725 CACGGCAGAGTATGTGCTTAGGGTCAATTTCTATCCGCCAACTCAAGA-TACGGAATTAG 783
|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 534 AACGGCAGAGTATGTTCTTAGGGTCAATTTCTATCCGCCAACTCAAGACT-CGGAATTAG 592
Query 784 TCATAGGAGCCGCGGCGCACAGCGATATGGGTGCAATCGCACTCCTCATCCCAAATGAGG 843
|||||||||||||||| ||||||||||||||||||||||||||| || |||| |||||||
Sbjct 593 TCATAGGAGCCGCGGCCCACAGCGATATGGGTGCAATCGCACTCATCCTCCCGAATGAGG 652
Query 844 TTCCTGGACTTCAAGCCTTCAAGGACGAACAATGGTTGGACCTTGACTATATCGACTCCG 903
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 653 TTCCTGGACTTCAAGCCTTCAAGGACGAACAATGGTTGGACCTTAACTATATCAACTCTG 712
Query 904 CCGTGGTTGTTATCATTGGCGATCAACTCATGGTATGGATGACCAACGGGAGGTTAAAGA 963
|||||||||||||||| || |||||||||||| | ||||||||||||||||||| ||||
Sbjct 713 CCGTGGTTGTTATCATCGGTGATCAACTCATG--A-GGATGACCAACGGGAGGTTCAAGA 769
Query 964 ACGTTCTTCACAGAGCGAAGTCTGATAAGGACAA-ATTGAGGATTTCTTGGCCTGTTTTT 1022
|||| ||||||||||||||| | |||| ||| || ||||||||| |||||||||||||||
Sbjct 770 ACGTGCTTCACAGAGCGAAGACGGATACGGA-AAGATTGAGGATATCTTGGCCTGTTTTT 828
Query 1023 GTTGCACCTAGGGCTGATATGTCCGTCGGACCTTTGCCGGAGTTTACCGGAGACGAGAAT 1082
|| || ||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 829 GTGGCGCCTCGGGCTGATATGTCCGTCGGACCTTTGCCGGAGCTTACCGGAGACGAGAAT 888
Query 1083 CCTCCCAAATTCGAGACTTTAATATATAATGACTATATTGACCAGAAGATAAGAGGCTGG 1142
||||| |||||||||||||||||||||||||| ||||| |||||||||||| |||||||
Sbjct 889 CCTCCTAAATTCGAGACTTTAATATATAATGAGTATATAAACCAGAAGATAAAAGGCTGG 948
Query 1143 GCGCTCGAAGATCTTCCTGTCTACTGA 1169
|||||||||||||||||||||||||||
Sbjct 949 GCGCTCGAAGATCTTCCTGTCTACTGA 975
> Ahg496549 jgi|Araly1|496549|fgenesh2_kg.8__2365__AT5G63600.1
Length=1008
Score = 1314 bits (711), Expect = 0.0
Identities = 937/1041 (90%), Gaps = 36/1041 (3%)
Strand=Plus/Plus
Query 135 TTACCCTATTTAAATCCCCTCTAGCCTTGTTTTCCTTCTCACACCTATGAAGCAATGGAA 194
|||||||||||||| ||||||||||||| ||||| || |||||| ||||||||||||| |
Sbjct 1 TTACCCTATTTAAACCCCCTCTAGCCTTCTTTTCTTTGTCACACTTATGAAGCAATGG-A 59
Query 195 GAAGAGAGAGACCACAATGCATCTGAGTCGTCTCTCCCATCTTTGAGCAAGCAGTTGGAG 254
||| |||||| |||| || | | | ||||||||| || | || |
Sbjct 60 -AAGCGAGAGA-GACAA--CA-AT-A--CATCTCTCCCA---TT--G---GC-------G 96
Query 255 AGCTCGACTCTTGGAGGAAGCGCGGTCGACGTTCCCGTCGTTGATCTAAGCGTTTCTGAT 314
||||| ||||||||||||||||| | ||||||||||||||||||||||||||| |||||
Sbjct 97 AGCTCAACTCTTGGAGGAAGCGC-G--GACGTTCCCGTCGTTGATCTAAGCGTTACTGAT 153
Query 315 GAA-GACTTCTTGGTGCGTGAGGTGGTGAAAGCGAGTGAAGAGTGGGGAGTTTTTCAGGT 373
||| || ||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 154 GAAGGA-TTCCTGGTGCGTGAGGTGACGAAGGCGAGTGAAGAGTGGGGAGTTTTTCAGGT 212
Query 374 GGTTAACCATGGGATTCCAACCGAGCTGATGCGGCAGCTGCAAATGGTTGGTACGCAGTT 433
||||||||||||||||||||| ||||| ||| |||||||||||||| ||| | ||||||
Sbjct 213 GGTTAACCATGGGATTCCAACTGAGCTCATGTTGCAGCTGCAAATGGCTGGGAAGCAGTT 272
Query 434 TTTCGAGCTCCCGGATGCTGAAAAGGAAACCGTGGCGAAAGAGGAAGACTTCGAAGGATA 493
|||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TTTCGAACTCCCGGAGGCGGAAAAGGAAACCGTGGCGAAAGAGGAAGACTTCGAAGGATT 332
Query 494 CAAGAAGAATTATCTAGGAGGTATAAACAATTGGGACGAACATCTCTTTCACAGACTCTC 553
||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 333 CAAGAGGAACTATCTAGGAGGTATAAACAATTGGGACGAACATCTGTTTCACAGACTCTC 392
Query 554 TCCACCCTCAATTATCAATTATAAATATTGGCCTAAGAATCCTCCTCAATATAGGGAGGT 613
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 393 CCCACCCTCAATCATCAATTATAAATATTGGCCTAAGAATCCTCCTCAATACAGGGAGGT 452
Query 614 GACGGAGGAGTATACAAAGCATATGAAGAGGCTAACGGAGAAGATTCTTGGTTGGTTATC 673
||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 453 GACTGAGGAGTACACAAAGCATATGAGGAGGCTAACGGAGAAGATTCTTGGTTGGTTATC 512
Query 674 AGAGGGATTAGGGTTACAGCGTGAGACGTTCACGCAAAGTATAGGTGGTGACACGGCAGA 733
|||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||
Sbjct 513 GGAGGGATTAGGGTTACCGCGTGAGACGTTCACGAAAAGTATAGGTGGTGAAACGGCAGA 572
Query 734 GTATGTGCTTAGGGTCAATTTCTATCCGCCAACTCAAGATACGGAATTAGTCATAGGAGC 793
|||||||||||| ||||||||||||||||||||||| | || || ||| |||||||||
Sbjct 573 GTATGTGCTTAGAATCAATTTCTATCCGCCAACTCAAAACACTGATTTAACCATAGGAGC 632
Query 794 CGCGGCGCACAGCGATATGGGTGCAATCGCACTCCTCATCCCAAATGAGGTTCCTGGACT 853
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 633 TGCGGCGCACAGCGATATGGGTGCAATCGCACTCCTCATCCCCAATGAGGTTCCTGGACT 692
Query 854 TCAAGCCTTCAAGGACGAACAATGGTTGGACCTTGACTATATCGACTCCGCCGTGGTTGT 913
||||||||||||||| |||||||||||||||||| ||||| || |||||||||| |||||
Sbjct 693 TCAAGCCTTCAAGGATGAACAATGGTTGGACCTTAACTATGTCAACTCCGCCGTTGTTGT 752
Query 914 TATCATTGGCGATCAACTCATGGTATGGATGACCAACGGGAGGTTAAAGAACGTTCTTCA 973
|||||| ||||||||||||||| | ||||||||||||||||||| |||||||| |||||
Sbjct 753 TATCATCGGCGATCAACTCATG--A-GGATGACCAACGGGAGGTTCAAGAACGTGCTTCA 809
Query 974 CAGAGCGAAGTCTGATAAGGACAA-ATTGAGGATTTCTTGGCCTGTTTTTGTTGCACCTA 1032
|||||||||| | ||| |||| || ||||||||| |||||||||||||||||||| || |
Sbjct 810 CAGAGCGAAGACGGATCAGGA-AAGATTGAGGATATCTTGGCCTGTTTTTGTTGCGCC-A 867
Query 1033 -GGGCTGATATGTCCGTCGGACCTTTGCCGGAGTTTACCGGAGACGAGAATCCTCCCAAA 1091
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||
Sbjct 868 CGGGCTGATATGTCCGTCGGACCTTTGCCGGAGCTTACCGGAGACGACAATCCTCCTAAA 927
Query 1092 TTCGAGACTTTAATATATAATGACTATATTGACCAGAAGATAAGAGGCTGGGCGCTCGAA 1151
|| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 928 TTTGAGACTTTGATATATAATGACTATATTGACCAGAAGATAAAAGGCTGGGCGCTCGAA 987
Query 1152 GATCTTCCTGTCTACTGAAAA 1172
|||||||||||||||||||||
Sbjct 988 GATCTTCCTGTCTACTGAAAA 1008
> Ahg918141 jgi|Araly1|918141|Al_scaffold_0008_2892
Length=1035
Score = 909 bits (492), Expect = 0.0
Identities = 769/899 (86%), Gaps = 33/899 (4%)
Strand=Plus/Plus
Query 286 TTCCCGTCGTTGATCTAAGCGTTTCTGATGAAGA-CTTCTTGGTGCGTGAGGTGGTGAAA 344
||||||||||||||||||||| |||||| ||||| | || ||||||||| ||||||||||
Sbjct 155 TTCCCGTCGTTGATCTAAGCGCTTCTGACGAAGAGC-TCGTGGTGCGTGCGGTGGTGAAA 213
Query 345 GCGAGTGAAGAGTGGGGAGTTTTTCAGGTGGTTAACCATGGGATTCCAACCGAGCTGATG 404
||||||||||| |||||| ||||||||||||||||||| || ||||| || |||||||||
Sbjct 214 GCGAGTGAAGAATGGGGAATTTTTCAGGTGGTTAACCACGGAATTCCCACTGAGCTGATG 273
Query 405 CGGCAGCTGCAAATGGTTGGTACGCAGTTTTTCGAGCTCCCGGATGCTGAAAAGGAAACC 464
| |||||||||| ||||||| | ||||||||||| ||||| || || ||||| ||| |
Sbjct 274 CAGCAGCTGCAAGTGGTTGGGAAACAGTTTTTCGACCTCCCAGAGGCGGAAAAAGAAGCT 333
Query 465 GTGGCGAAAGAGGAAGACTTCGAAGGATACAAGAAGAATTATCTAGGAGGTATAAACAAT 524
|||||||||||||||||||| ||||||||||||| ||| ||||| | ||||||||| |
Sbjct 334 GTGGCGAAAGAGGAAGACTTTGAAGGATACAAGAGGAACTATCTTGAAGGTATAAAGGCT 393
Query 525 TGGGACGAACATCTCTTTCACAGACTCTCTCCACCCTCAAT-TATCAATTATAAATATTG 583
|||||||||||||| ||||| ||| ||| |||||||| || || ||||||||||||||
Sbjct 394 TGGGACGAACATCTGTTTCATAGAATCTGGCCACCCTC-ATGCATTAATTATAAATATTG 452
Query 584 GCCTAAGAATCCTCCTCAATATAGGGAGGTGACGGAGGAGTATACAAAGCATATGAAGAG 643
| ||||||||||||||| ||||||||| |||| ||||| ||||||| |||||||||||
Sbjct 453 GTCTAAGAATCCTCCTCGATATAGGGAAGTGAATGAGGAATATACAAGGCATATGAAGAA 512
Query 644 GCTAACGGAGAAGATTCTTGGTTGGTTATCAGAGGGATTAGGGTTA-CAGCGTG-AGACG 701
|||||| ||||| |||||||||||||||||||||||| |||||||| || | || || ||
Sbjct 513 GCTAACAGAGAAAATTCTTGGTTGGTTATCAGAGGGACTAGGGTTACCA-CCTGCAG-CG 570
Query 702 TTCACGCAAAGTATAGGTGGTGACACGGCAGAGTATGTGCTTAGGGTCAATTTCTATCCG 761
|| ||| ||||| ||||||| || | ||||||||||||| ||||||||||||||||||||
Sbjct 571 TTGACGAAAAGTTTAGGTGGCGAAATGGCAGAGTATGTGATTAGGGTCAATTTCTATCCG 630
Query 762 CCAACT-CAAGATACGGAATTAGTCATAGGAGCCGCGGCGCACAGCGATATGGGTGCAAT 820
|| || ||| || ||||||||| | |||||||||| | ||||| |||||| ||||||||
Sbjct 631 CCGTCTCCAAAAT-CGGAATTAGCCTTAGGAGCCGCCGTGCACACCGATATAGGTGCAAT 689
Query 821 CGCACTCCTCA-TCCCAAATGAGGTTCCTGGACTTCAAGCCTTCAAGGACGAACAATGGT 879
| |||| || | |||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 690 CACACTTCT-AGTCCCCAATGAGGTTCCTGGACTTCAAGTCTTCAAGGACGAACAATGGT 748
Query 880 TGGACCTTGACTATATCGACTCCGCCGTGGTTGTTATCATTGGCGATCAACTCATGGTAT 939
|||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||| |
Sbjct 749 TGGATCTTGAGTATATCAACTCCGCTGTGGTTGTTATCATTGGCGATCAACTCATG--A- 805
Query 940 GGATGACCAACGGGAGGTT-AAAGAACGTTCTTCACAGAGCGA-AGTCTG-ATAAGGACA 996
|||||| ||||||||||| ||| ||||| ||||| ||||| | | | || ||||||| |
Sbjct 806 GGATGAGCAACGGGAGGTACAAA-AACGTACTTCATAGAGCAACA-T-TGGATAAGGA-A 861
Query 997 AATT-GAGGATTTCT-TGGCCTGTTTTTGTTGCACCTAGGGC-TGATATGTCCGTCGGAC 1053
|||| |||||||| | ||||| ||||||||||| |||| | | |||| ||| ||||||||
Sbjct 862 AATTTGAGGATTT-TGTGGCCGGTTTTTGTTGCGCCTAAG-CATGATTTGTTCGTCGGAC 919
Query 1054 CTTTGCCGGAGTTTACCGGAGACGAGAATCCTCCCAAATTCGAGACTTTAATATATAA-T 1112
||||||||||| |||| |||||||||||||||||||||||||| ||| || | ||||| |
Sbjct 920 CTTTGCCGGAGCTTACTGGAGACGAGAATCCTCCCAAATTCGAAACTATAGTTTATAAAT 979
Query 1113 GACTATATTG-ACCAGAAGATAAGAGGCTGGGCGCTCGA-AGATCTTCCTGTCTACTGA 1169
||||| ||| |||||| ||| ||| |||| ||||||| | | |||||| |||| |||
Sbjct 980 -ACTAT-TTGCACCAGACGATTAGAAACTGGACGCTCGACA-AGCTTCCTCTCTATTGA 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58697067545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5